Wall clock time and date at job start Mon Mar 30 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48501 * 109.46614 * 239.99396 * 3 2 1 5 5 H 1.48490 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46984 * 119.99808 * 3 2 1 7 7 C 1.37878 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99851 * 0.02562 * 7 2 1 10 10 H 1.09010 * 109.46656 * 59.99955 * 9 7 2 11 11 O 1.42902 * 109.47197 * 179.97438 * 9 7 2 12 12 C 1.35987 * 116.99806 * 211.70700 * 11 9 7 13 13 C 1.38566 * 120.07830 * 354.49747 * 12 11 9 14 14 C 1.38241 * 119.99874 * 179.70014 * 13 12 11 15 15 C 1.38253 * 120.14981 * 0.59626 * 14 13 12 16 16 C 1.38239 * 120.14396 * 359.68148 * 15 14 13 17 17 C 1.38571 * 120.00070 * 0.02562 * 16 15 14 18 18 O 1.35989 * 120.07286 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47203 * 299.99998 * 9 7 2 20 20 F 1.39893 * 109.47109 * 299.99603 * 19 9 7 21 21 F 1.39901 * 109.46973 * 60.00218 * 19 9 7 22 22 F 1.39908 * 109.46955 * 179.97438 * 19 9 7 23 23 H 0.96995 * 119.99565 * 0.02562 * 1 2 3 24 24 H 1.08000 * 119.99639 * 359.97438 * 13 12 11 25 25 H 1.08003 * 119.92529 * 180.29746 * 14 13 12 26 26 H 1.07995 * 119.92962 * 179.69889 * 15 14 13 27 27 H 1.08002 * 120.00339 * 180.02562 * 16 15 14 28 28 H 0.96700 * 114.00155 * 270.02358 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5570 -0.8898 11 8 2.1797 -3.5853 0.0005 12 6 1.7973 -4.7244 -0.6363 13 6 0.5147 -4.8366 -1.1485 14 6 0.1297 -5.9929 -1.8010 15 6 1.0179 -7.0440 -1.9335 16 6 2.2972 -6.9409 -1.4198 17 6 2.6915 -5.7823 -0.7699 18 8 3.9494 -5.6794 -0.2636 19 6 0.3710 -2.5800 1.2494 20 9 1.1748 -2.5057 2.3920 21 9 -0.5382 -1.5166 1.2488 22 9 -0.3290 -3.7913 1.2491 23 1 -0.4849 0.8400 -0.0004 24 1 -0.1828 -4.0189 -1.0417 25 1 -0.8688 -6.0772 -2.2039 26 1 0.7118 -7.9476 -2.4397 27 1 2.9893 -7.7633 -1.5250 28 1 4.0317 -5.9847 0.6503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261124200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:12 Heat of formation + Delta-G solvation = -186.809817 kcal Electronic energy + Delta-G solvation = -20572.405135 eV Core-core repulsion = 16754.126712 eV Total energy + Delta-G solvation = -3818.278423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.58728 -46.24816 -45.82118 -39.83160 -37.32492 -36.09702 -33.29617 -29.99984 -29.72166 -28.19366 -24.75989 -23.00107 -22.04937 -20.92789 -18.51516 -17.51721 -17.29282 -16.92388 -16.50234 -16.05461 -15.31066 -15.20565 -14.72167 -14.23931 -13.84648 -13.36548 -13.10480 -13.03584 -12.71390 -12.57621 -12.38507 -12.10160 -12.03101 -11.71374 -11.53148 -11.23902 -11.07178 -10.90455 -10.49274 -10.27640 -10.02499 -9.48288 -8.74712 -8.51052 -7.64231 -6.35633 -4.56077 1.53886 1.74942 3.18550 3.21994 3.25003 3.78139 3.96739 4.18574 4.32058 4.58178 4.79352 5.17917 5.28590 5.41835 5.57350 5.62176 5.68844 5.86227 6.13636 6.16666 6.39500 6.56469 6.67904 6.78182 7.04679 7.43595 7.54407 7.84596 8.18750 8.55450 9.10302 10.57139 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.026038 B = 0.007683 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.105729 B = 3643.390300 C = 3971.338353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.062 3.938 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.183 3.817 10 H 0.074 0.926 11 O -0.287 6.287 12 C 0.119 3.881 13 C -0.189 4.189 14 C -0.089 4.089 15 C -0.157 4.157 16 C -0.113 4.113 17 C 0.062 3.938 18 O -0.486 6.486 19 C 0.409 3.591 20 F -0.198 7.198 21 F -0.131 7.131 22 F -0.224 7.224 23 H 0.271 0.729 24 H 0.137 0.863 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -9.130 -1.311 9.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.146 4.146 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.570 4.570 8 H 0.103 0.897 9 C 0.126 3.874 10 H 0.091 0.909 11 O -0.199 6.199 12 C 0.071 3.929 13 C -0.207 4.207 14 C -0.107 4.107 15 C -0.176 4.176 16 C -0.132 4.132 17 C 0.017 3.983 18 O -0.295 6.295 19 C 0.354 3.646 20 F -0.180 7.180 21 F -0.112 7.112 22 F -0.206 7.206 23 H 0.081 0.919 24 H 0.155 0.845 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.190 -8.696 -1.734 8.870 hybrid contribution -0.222 0.638 0.772 1.026 sum -0.031 -8.058 -0.962 8.115 Atomic orbital electron populations 1.70350 1.05906 1.27863 1.44070 1.25098 0.95291 1.00234 0.93931 0.86109 0.79241 0.80372 0.79301 1.19501 1.20750 1.19548 1.20738 0.94730 0.86616 1.54951 0.89727 1.21390 0.88954 0.85675 0.91423 0.90919 1.86284 1.43988 1.20112 1.69510 1.19731 0.92313 0.88138 0.92695 1.21437 0.95942 1.00454 1.02918 1.20932 0.99434 0.92691 0.97615 1.20809 0.93625 0.99396 1.03727 1.21122 0.96467 0.96206 0.99358 1.17769 0.84673 0.92540 1.03357 1.84880 1.24622 1.87508 1.32466 1.23372 0.80657 0.72770 0.87847 1.93025 1.74200 1.96049 1.54736 1.93437 1.68133 1.53455 1.96212 1.93051 1.81697 1.48886 1.96992 0.91858 0.84501 0.85899 0.86033 0.85365 0.76417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.77 9.50 55.43 0.53 -22.24 15 2 C 0.06 1.63 5.20 -17.82 -0.09 1.53 15 3 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 15 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 7 C -0.53 -14.43 8.62 -34.44 -0.30 -14.72 15 8 H 0.08 2.29 7.81 -52.49 -0.41 1.88 15 9 C 0.18 4.62 1.96 -27.88 -0.05 4.57 15 10 H 0.07 1.85 5.88 -51.92 -0.31 1.55 15 11 O -0.29 -6.87 9.48 -34.21 -0.32 -7.19 15 12 C 0.12 2.46 6.41 -39.12 -0.25 2.21 15 13 C -0.19 -3.58 7.71 -39.46 -0.30 -3.88 15 14 C -0.09 -1.36 10.04 -39.57 -0.40 -1.76 15 15 C -0.16 -2.17 10.04 -39.58 -0.40 -2.57 15 16 C -0.11 -1.67 9.98 -39.46 -0.39 -2.06 15 17 C 0.06 1.11 6.72 -39.12 -0.26 0.85 15 18 O -0.49 -8.30 13.29 -34.21 -0.45 -8.76 15 19 C 0.41 10.29 2.82 37.16 0.10 10.39 15 20 F -0.20 -5.08 16.97 2.25 0.04 -5.05 15 21 F -0.13 -3.50 12.91 2.25 0.03 -3.47 15 22 F -0.22 -5.18 14.82 2.25 0.03 -5.14 15 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 24 H 0.14 2.74 5.19 -52.49 -0.27 2.47 15 25 H 0.12 1.54 8.06 -52.48 -0.42 1.12 15 26 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 27 H 0.13 1.53 8.06 -52.49 -0.42 1.10 15 28 H 0.38 4.74 9.06 45.56 0.41 5.16 15 LS Contribution 257.77 15.07 3.88 3.88 Total: -1.00 -29.43 257.77 -4.61 -34.04 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -0.98 Total: 3.92 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.35 Total: -5.44 kcal Atomic # 7 Polarization: -22.77 SS G_CDS: 0.53 Total: -22.24 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.78 Total: -15.95 kcal Atomic # 9 Polarization: -13.76 SS G_CDS: 0.10 Total: -13.66 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.43 -4.61 -34.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.769 kcal (2) G-P(sol) polarization free energy of solvation -29.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds