Wall clock time and date at job start Mon Mar 30 2020 06:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99936 * 2 1 4 4 H 1.48501 * 109.47352 * 239.99881 * 3 2 1 5 5 H 1.48493 * 109.47241 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47115 * 120.00251 * 3 2 1 7 7 C 1.37876 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00443 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99680 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46977 * 299.99694 * 9 7 2 11 11 O 1.42899 * 109.47093 * 179.97438 * 9 7 2 12 12 C 1.35992 * 116.99981 * 154.41871 * 11 9 7 13 13 C 1.38570 * 120.07425 * 355.02419 * 12 11 9 14 14 C 1.38240 * 119.99970 * 179.97438 * 13 12 11 15 15 C 1.38253 * 120.14824 * 0.02821 * 14 13 12 16 16 C 1.38244 * 120.14371 * 359.95509 * 15 14 13 17 17 C 1.38565 * 120.00274 * 0.27367 * 16 15 14 18 18 O 1.35992 * 120.07329 * 179.75096 * 17 16 15 19 19 C 1.52994 * 109.47045 * 59.99842 * 9 7 2 20 20 F 1.39907 * 109.47070 * 179.97438 * 19 9 7 21 21 F 1.39897 * 109.47512 * 299.99771 * 19 9 7 22 22 F 1.39898 * 109.47691 * 60.00193 * 19 9 7 23 23 H 0.97003 * 119.99642 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.99777 * 359.97438 * 13 12 11 25 25 H 1.07999 * 119.92489 * 180.02562 * 14 13 12 26 26 H 1.07998 * 119.92680 * 179.97438 * 15 14 13 27 27 H 1.08003 * 119.99692 * 180.02562 * 16 15 14 28 28 H 0.96699 * 113.99902 * 90.00199 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8903 11 8 2.1797 -3.5853 0.0005 12 6 1.7502 -4.7648 0.5237 13 6 0.5015 -4.8467 1.1189 14 6 0.0662 -6.0466 1.6498 15 6 0.8745 -7.1666 1.5891 16 6 2.1212 -7.0918 0.9964 17 6 2.5655 -5.8910 0.4666 18 8 3.7937 -5.8145 -0.1122 19 6 0.3719 -2.5805 -1.2490 20 9 -0.3271 -3.7923 -1.2493 21 9 -0.5372 -1.5172 -1.2496 22 9 1.1766 -2.5066 -2.3910 23 1 -0.4850 0.8401 0.0004 24 1 -0.1316 -3.9732 1.1680 25 1 -0.9074 -6.1092 2.1130 26 1 0.5310 -8.1021 2.0054 27 1 2.7505 -7.9683 0.9500 28 1 3.7944 -6.0056 -1.0602 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261124201.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:14 Heat of formation + Delta-G solvation = -205.250204 kcal Electronic energy + Delta-G solvation = -20615.450531 eV Core-core repulsion = 16796.372473 eV Total energy + Delta-G solvation = -3819.078058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.59402 -48.23183 -47.88411 -41.26400 -38.86695 -37.39462 -35.27273 -31.53051 -31.21866 -29.73301 -26.77222 -24.65786 -23.38521 -22.56231 -20.10422 -19.21415 -19.10124 -18.91419 -18.35945 -17.68979 -16.96339 -16.69590 -16.32380 -15.57975 -15.34830 -15.17841 -15.01410 -14.71138 -14.60915 -14.47014 -14.38440 -14.13284 -13.71603 -13.17142 -13.00140 -12.92988 -12.73603 -12.54475 -12.19807 -11.96916 -11.43337 -11.39002 -10.72783 -9.78661 -9.06729 -8.35417 -6.64221 0.27590 0.43149 1.40798 1.43833 1.52394 2.11327 2.27161 2.43257 2.70071 2.79630 3.30845 3.49579 3.62293 3.94662 3.96003 4.11049 4.26515 4.48256 4.60268 4.69167 4.95548 5.29971 5.36478 5.46747 5.50780 5.55479 5.84046 6.26920 6.52516 6.89910 7.06765 8.57850 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.027315 B = 0.007614 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.822614 B = 3676.759964 C = 3953.196676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.022 3.978 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.562 4.562 8 H 0.074 0.926 9 C 0.190 3.810 10 H 0.063 0.937 11 O -0.309 6.309 12 C 0.068 3.932 13 C -0.205 4.205 14 C -0.089 4.089 15 C -0.136 4.136 16 C -0.105 4.105 17 C 0.050 3.950 18 O -0.500 6.500 19 C 0.409 3.591 20 F -0.212 7.212 21 F -0.142 7.142 22 F -0.204 7.204 23 H 0.275 0.725 24 H 0.115 0.885 25 H 0.153 0.847 26 H 0.169 0.831 27 H 0.164 0.836 28 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -10.669 1.569 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.598 4.598 8 H 0.092 0.908 9 C 0.132 3.868 10 H 0.080 0.920 11 O -0.222 6.222 12 C 0.022 3.978 13 C -0.224 4.224 14 C -0.107 4.107 15 C -0.154 4.154 16 C -0.123 4.123 17 C 0.005 3.995 18 O -0.311 6.311 19 C 0.354 3.646 20 F -0.194 7.194 21 F -0.123 7.123 22 F -0.185 7.185 23 H 0.085 0.915 24 H 0.133 0.867 25 H 0.171 0.829 26 H 0.186 0.814 27 H 0.182 0.818 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -0.039 -10.345 2.019 10.540 hybrid contribution -0.303 1.013 -0.968 1.433 sum -0.341 -9.332 1.052 9.397 Atomic orbital electron populations 1.70434 1.07018 1.28831 1.44053 1.25916 0.96149 1.03210 0.93061 0.85175 0.78208 0.76408 0.79413 1.19476 1.19534 1.18668 1.20928 0.94521 0.88029 1.56356 0.90779 1.21091 0.88987 0.86120 0.90610 0.91985 1.86239 1.41015 1.18188 1.76785 1.20210 0.94344 0.87012 0.96192 1.21400 0.95990 1.00923 1.04067 1.21320 1.00928 0.91135 0.97297 1.21364 0.93394 0.99719 1.00910 1.21547 0.96990 0.95707 0.98059 1.18123 0.86214 0.91085 1.04048 1.84815 1.24996 1.93009 1.28316 1.23347 0.80577 0.72872 0.87824 1.93064 1.81443 1.47934 1.96989 1.93402 1.68487 1.54169 1.96272 1.93002 1.74369 1.96120 1.55050 0.91498 0.86720 0.82932 0.81388 0.81817 0.74426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.32 9.50 21.45 0.20 -47.12 15 2 C 0.02 1.16 5.20 84.65 0.44 1.60 15 3 Si 0.99 41.94 29.54 68.60 2.03 43.97 15 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 15 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 15 7 C -0.56 -31.27 8.62 25.60 0.22 -31.05 15 8 H 0.07 4.15 7.81 -2.91 -0.02 4.13 15 9 C 0.19 9.96 2.02 29.85 0.06 10.02 15 10 H 0.06 3.33 5.77 -2.39 -0.01 3.32 15 11 O -0.31 -15.39 9.51 -79.60 -0.76 -16.15 15 12 C 0.07 2.87 6.18 22.57 0.14 3.01 15 13 C -0.20 -7.81 7.59 22.35 0.17 -7.64 15 14 C -0.09 -2.51 10.04 22.27 0.22 -2.29 15 15 C -0.14 -3.16 10.04 22.27 0.22 -2.94 15 16 C -0.10 -2.74 9.98 22.35 0.22 -2.51 15 17 C 0.05 1.78 6.72 22.57 0.15 1.93 15 18 O -0.50 -16.85 13.29 -79.60 -1.06 -17.90 15 19 C 0.41 21.16 2.83 71.98 0.20 21.37 15 20 F -0.21 -10.03 14.78 44.97 0.66 -9.36 15 21 F -0.14 -7.76 12.91 44.97 0.58 -7.18 15 22 F -0.20 -10.68 16.97 44.97 0.76 -9.92 15 23 H 0.27 14.02 8.31 -92.71 -0.77 13.25 15 24 H 0.11 4.77 5.44 -2.91 -0.02 4.76 15 25 H 0.15 3.32 8.06 -2.91 -0.02 3.29 15 26 H 0.17 2.43 8.06 -2.91 -0.02 2.41 15 27 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 28 H 0.40 9.88 9.06 -74.06 -0.67 9.21 15 Total: -1.00 -64.71 257.62 5.04 -59.67 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.56 Total: 12.49 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 2.06 Total: -8.50 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.20 Total: -47.12 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.81 Total: -34.05 kcal Atomic # 9 Polarization: -28.47 SS G_CDS: 2.01 Total: -26.46 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -64.71 5.04 -59.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261124201.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.579 kcal (2) G-P(sol) polarization free energy of solvation -64.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds