Wall clock time and date at job start Mon Mar 30 2020 06:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.99967 * 269.71897 * 10 9 7 12 12 C 1.38213 * 120.00261 * 179.74802 * 11 10 9 13 13 C 1.38264 * 119.99377 * 0.54936 * 12 11 10 14 14 C 1.38208 * 120.00379 * 359.70932 * 13 12 11 15 15 C 1.50702 * 120.00296 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.46980 * 175.02475 * 15 14 13 17 17 F 1.39893 * 109.47118 * 55.01717 * 15 14 13 18 18 C 1.53002 * 109.46794 * 295.01719 * 15 14 13 19 19 F 1.39899 * 109.47235 * 59.99755 * 18 15 14 20 20 F 1.39900 * 109.46929 * 179.97438 * 18 15 14 21 21 F 1.39902 * 109.47028 * 300.00295 * 18 15 14 22 22 C 1.38218 * 119.99846 * 89.99972 * 10 9 7 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.08006 * 120.00293 * 0.02562 * 11 10 9 27 27 H 1.08001 * 120.00612 * 180.27959 * 12 11 10 28 28 H 1.08001 * 119.99629 * 179.72082 * 13 12 11 29 29 H 1.08001 * 119.99942 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6698 -4.1705 -1.2140 12 6 3.5720 -5.2176 -1.2209 13 6 4.0263 -5.7464 -0.0269 14 6 3.5830 -5.2241 1.1734 15 6 4.0778 -5.8009 2.4748 16 1 3.6915 -5.2091 3.3047 17 9 5.4763 -5.7750 2.4945 18 6 3.5925 -7.2456 2.6095 19 9 4.0880 -8.0053 1.5443 20 9 4.0523 -7.7813 3.8173 21 9 2.1938 -7.2715 2.5896 22 6 2.6848 -4.1730 1.1803 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.3115 -3.7603 -2.1467 27 1 3.9187 -5.6255 -2.1589 28 1 4.7278 -6.5675 -0.0323 29 1 2.3384 -3.7648 2.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261129485.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:13 Heat of formation + Delta-G solvation = -193.921373 kcal Electronic energy + Delta-G solvation = -19476.062540 eV Core-core repulsion = 15669.848526 eV Total energy + Delta-G solvation = -3806.214013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.39622 -48.28113 -47.82103 -47.55665 -39.01949 -34.13357 -32.64420 -31.20913 -28.58969 -26.80201 -23.95226 -23.29532 -21.86519 -20.49936 -18.81534 -18.69419 -18.10108 -16.98813 -16.39892 -16.10212 -15.50909 -14.61341 -14.53355 -14.49659 -14.27422 -14.17825 -13.96600 -13.91237 -13.88805 -13.73000 -13.31885 -12.55814 -12.15496 -11.94728 -11.65168 -11.50696 -11.16803 -10.82311 -10.52856 -10.23073 -9.98101 -9.10130 -8.66673 -8.45935 -8.02846 -6.46937 -4.19401 1.42664 1.80853 2.38627 3.36729 3.39493 3.40358 3.59494 3.64290 3.75345 4.07444 4.35908 4.48401 4.52305 4.86820 5.26014 5.31415 5.31986 5.63666 5.79158 5.93784 6.16984 6.41897 6.66164 6.76766 6.84343 7.04904 7.34902 7.44727 8.00318 8.33266 8.74042 9.51853 10.92126 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.030676 B = 0.004999 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.557197 B = 5599.877573 C = 5720.947179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.018 3.982 3 Si 1.070 2.930 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.596 4.596 8 H 0.051 0.949 9 C 0.035 3.965 10 C -0.031 4.031 11 C -0.100 4.100 12 C -0.122 4.122 13 C -0.113 4.113 14 C -0.156 4.156 15 C 0.112 3.888 16 H 0.134 0.866 17 F -0.175 7.175 18 C 0.435 3.565 19 F -0.172 7.172 20 F -0.178 7.178 21 F -0.166 7.166 22 C -0.086 4.086 23 H 0.269 0.731 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 -13.456 3.628 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.186 4.186 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.634 4.634 8 H 0.070 0.930 9 C -0.002 4.002 10 C -0.031 4.031 11 C -0.118 4.118 12 C -0.140 4.140 13 C -0.131 4.131 14 C -0.157 4.157 15 C 0.074 3.926 16 H 0.152 0.848 17 F -0.155 7.155 18 C 0.380 3.620 19 F -0.154 7.154 20 F -0.160 7.160 21 F -0.148 7.148 22 C -0.104 4.104 23 H 0.080 0.920 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.948 -11.847 3.637 14.208 hybrid contribution 0.315 -1.959 0.041 1.985 sum 7.263 -13.806 3.678 16.028 Atomic orbital electron populations 1.70798 1.06866 1.30664 1.46096 1.25891 0.96474 1.02689 0.93535 0.83521 0.74889 0.75131 0.76693 1.20661 1.21318 1.21329 1.21881 0.94366 0.90738 1.56440 0.93026 1.18500 0.93126 0.91168 0.97406 1.20455 0.96252 0.94716 0.91665 1.21267 0.96681 0.95349 0.98523 1.21046 0.98220 0.97325 0.97392 1.20856 1.00248 1.00206 0.91841 1.19510 1.03012 1.00966 0.92173 1.21397 0.78225 0.91193 1.01749 0.84819 1.92942 1.27901 1.96809 1.97886 1.21023 0.76406 0.90470 0.74093 1.93190 1.87345 1.78417 1.56403 1.93214 1.88663 1.88209 1.45868 1.93235 1.28569 1.96844 1.96128 1.20858 0.96057 0.94328 0.99163 0.92023 0.96025 0.95964 0.85847 0.86107 0.86004 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.81 13.65 55.43 0.76 -26.06 15 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 15 3 Si 1.07 24.60 29.90 -169.99 -5.08 19.51 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.31 7.11 56.52 0.40 -5.90 15 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.60 -16.29 9.09 -34.44 -0.31 -16.60 15 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 15 9 C 0.03 0.85 4.42 -29.03 -0.13 0.72 15 10 C -0.03 -0.63 5.07 -104.63 -0.53 -1.16 15 11 C -0.10 -1.83 9.70 -39.59 -0.38 -2.22 15 12 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 15 13 C -0.11 -1.75 8.71 -39.58 -0.34 -2.10 15 14 C -0.16 -2.47 4.78 -104.62 -0.50 -2.97 15 15 C 0.11 1.47 3.58 -27.88 -0.10 1.37 15 16 H 0.13 1.43 7.89 -51.93 -0.41 1.02 15 17 F -0.18 -2.45 16.89 2.25 0.04 -2.41 15 18 C 0.43 5.57 2.90 37.16 0.11 5.67 15 19 F -0.17 -2.29 15.03 2.25 0.03 -2.26 15 20 F -0.18 -2.20 17.30 2.25 0.04 -2.16 15 21 F -0.17 -2.24 17.02 2.25 0.04 -2.20 15 22 C -0.09 -1.56 9.33 -39.58 -0.37 -1.93 15 23 H 0.27 7.86 7.22 -40.82 -0.29 7.56 15 24 H 0.02 0.54 7.96 -51.93 -0.41 0.13 15 25 H 0.02 0.56 7.94 -51.93 -0.41 0.15 15 26 H 0.12 2.17 8.06 -52.48 -0.42 1.75 15 27 H 0.12 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.12 1.67 6.80 -52.49 -0.36 1.31 15 29 H 0.12 2.12 7.95 -52.49 -0.42 1.70 15 LS Contribution 273.82 15.07 4.13 4.13 Total: -1.00 -29.25 273.82 -5.46 -34.71 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -2.35 Total: -2.15 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.06 Total: -21.10 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.76 Total: -26.06 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 0.15 Total: -9.03 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.51 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.25 -5.46 -34.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129485.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.211 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds