Wall clock time and date at job start Mon Mar 30 2020 06:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.99967 * 269.71897 * 10 9 7 12 12 C 1.38213 * 120.00261 * 179.74802 * 11 10 9 13 13 C 1.38264 * 119.99377 * 0.54936 * 12 11 10 14 14 C 1.38208 * 120.00379 * 359.70932 * 13 12 11 15 15 C 1.50702 * 120.00296 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.46980 * 175.02475 * 15 14 13 17 17 F 1.39893 * 109.47118 * 55.01717 * 15 14 13 18 18 C 1.53002 * 109.46794 * 295.01719 * 15 14 13 19 19 F 1.39899 * 109.47235 * 59.99755 * 18 15 14 20 20 F 1.39900 * 109.46929 * 179.97438 * 18 15 14 21 21 F 1.39902 * 109.47028 * 300.00295 * 18 15 14 22 22 C 1.38218 * 119.99846 * 89.99972 * 10 9 7 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.08006 * 120.00293 * 0.02562 * 11 10 9 27 27 H 1.08001 * 120.00612 * 180.27959 * 12 11 10 28 28 H 1.08001 * 119.99629 * 179.72082 * 13 12 11 29 29 H 1.08001 * 119.99942 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6698 -4.1705 -1.2140 12 6 3.5720 -5.2176 -1.2209 13 6 4.0263 -5.7464 -0.0269 14 6 3.5830 -5.2241 1.1734 15 6 4.0778 -5.8009 2.4748 16 1 3.6915 -5.2091 3.3047 17 9 5.4763 -5.7750 2.4945 18 6 3.5925 -7.2456 2.6095 19 9 4.0880 -8.0053 1.5443 20 9 4.0523 -7.7813 3.8173 21 9 2.1938 -7.2715 2.5896 22 6 2.6848 -4.1730 1.1803 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.3115 -3.7603 -2.1467 27 1 3.9187 -5.6255 -2.1589 28 1 4.7278 -6.5675 -0.0323 29 1 2.3384 -3.7648 2.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261129485.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:13 Heat of formation + Delta-G solvation = -208.403428 kcal Electronic energy + Delta-G solvation = -19476.690529 eV Core-core repulsion = 15669.848526 eV Total energy + Delta-G solvation = -3806.842002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.42033 -49.34845 -48.82787 -48.60146 -40.39306 -36.00440 -34.06797 -32.78800 -29.82510 -28.56759 -25.37213 -24.95915 -23.20059 -21.90159 -19.84630 -19.74261 -19.25421 -18.89441 -17.70887 -17.28550 -16.76650 -15.83016 -15.73726 -15.61916 -15.56977 -15.47897 -15.34786 -15.20311 -14.96353 -14.92578 -14.85403 -14.10855 -13.48241 -13.45140 -13.36285 -13.06373 -12.53831 -12.49150 -11.97420 -11.96775 -11.68523 -11.02672 -10.58665 -9.98413 -9.60632 -8.67886 -6.42592 0.10799 0.43459 1.32498 1.53413 1.60440 1.80380 2.34086 2.52168 2.56505 2.64154 2.86638 3.12971 3.24119 3.52461 3.75468 4.00023 4.08865 4.20061 4.44233 4.55276 4.76145 4.96613 5.07490 5.12634 5.32992 5.43346 5.81379 5.86825 5.98275 6.13991 6.53465 7.37322 8.69945 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.030676 B = 0.004999 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.557197 B = 5599.877573 C = 5720.947179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.033 4.033 3 Si 1.116 2.884 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.605 4.605 8 H 0.047 0.953 9 C 0.040 3.960 10 C -0.064 4.064 11 C -0.113 4.113 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.152 4.152 15 C 0.114 3.886 16 H 0.160 0.840 17 F -0.177 7.177 18 C 0.441 3.559 19 F -0.174 7.174 20 F -0.173 7.173 21 F -0.171 7.171 22 C -0.094 4.094 23 H 0.257 0.743 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.121 0.879 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.083 -14.359 3.834 17.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.231 4.231 3 Si 0.937 3.063 4 H -0.208 1.208 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.643 4.643 8 H 0.065 0.935 9 C 0.003 3.997 10 C -0.065 4.065 11 C -0.131 4.131 12 C -0.130 4.130 13 C -0.127 4.127 14 C -0.152 4.152 15 C 0.077 3.923 16 H 0.177 0.823 17 F -0.157 7.157 18 C 0.387 3.613 19 F -0.155 7.155 20 F -0.154 7.154 21 F -0.152 7.152 22 C -0.112 4.112 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.139 0.861 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.918 -12.781 3.845 16.052 hybrid contribution -0.266 -1.798 -0.027 1.818 sum 8.652 -14.579 3.818 17.378 Atomic orbital electron populations 1.70919 1.07875 1.30018 1.48370 1.27363 0.96539 1.06523 0.92644 0.82945 0.74145 0.71195 0.78031 1.20809 1.19421 1.19567 1.22214 0.94328 0.92232 1.55478 0.93479 1.18285 0.93545 0.92294 0.95542 1.20207 0.97389 0.95058 0.93800 1.21335 0.97656 0.96467 0.97612 1.21372 0.96604 0.95815 0.99183 1.21256 0.99744 1.00163 0.91528 1.19685 1.01829 0.99867 0.93859 1.21454 0.78002 0.91669 1.01215 0.82304 1.92941 1.28090 1.96853 1.97835 1.20871 0.76121 0.90156 0.74198 1.93185 1.87332 1.78477 1.56542 1.93229 1.88572 1.88080 1.45545 1.93235 1.28989 1.96843 1.96156 1.20876 0.96768 0.95177 0.98420 0.93303 0.97736 0.97895 0.86088 0.82598 0.83614 0.85441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.61 13.65 21.45 0.29 -56.31 15 2 C -0.03 -1.85 5.46 84.65 0.46 -1.39 15 3 Si 1.12 49.27 29.90 68.60 2.05 51.32 15 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 7 C -0.60 -33.70 9.09 25.60 0.23 -33.47 15 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 15 9 C 0.04 2.04 4.42 29.10 0.13 2.17 15 10 C -0.06 -2.68 5.07 -19.87 -0.10 -2.78 15 11 C -0.11 -4.07 9.70 22.27 0.22 -3.85 15 12 C -0.11 -3.22 10.05 22.27 0.22 -2.99 15 13 C -0.11 -3.03 8.71 22.27 0.19 -2.84 15 14 C -0.15 -4.47 4.78 -19.87 -0.09 -4.57 15 15 C 0.11 2.68 3.58 29.85 0.11 2.78 15 16 H 0.16 2.95 7.89 -2.39 -0.02 2.93 15 17 F -0.18 -4.42 16.89 44.97 0.76 -3.66 15 18 C 0.44 10.13 2.90 71.98 0.21 10.34 15 19 F -0.17 -4.12 15.03 44.97 0.68 -3.44 15 20 F -0.17 -3.81 17.30 44.97 0.78 -3.03 15 21 F -0.17 -4.26 17.02 44.97 0.77 -3.49 15 22 C -0.09 -3.36 9.33 22.27 0.21 -3.16 15 23 H 0.26 15.70 7.22 -92.71 -0.67 15.03 15 24 H 0.00 0.23 7.96 -2.39 -0.02 0.22 15 25 H 0.00 0.15 7.94 -2.39 -0.02 0.13 15 26 H 0.12 4.30 8.06 -2.91 -0.02 4.27 15 27 H 0.16 3.34 8.06 -2.91 -0.02 3.32 15 28 H 0.15 3.39 6.80 -2.91 -0.02 3.37 15 29 H 0.13 4.33 7.95 -2.91 -0.02 4.30 15 Total: -1.00 -63.11 273.82 8.39 -54.72 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.28 Total: 3.63 kcal Atomic # 6 Polarization: -41.53 SS G_CDS: 1.78 Total: -39.74 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.29 Total: -56.31 kcal Atomic # 9 Polarization: -16.60 SS G_CDS: 2.98 Total: -13.62 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.32 kcal Total: -63.11 8.39 -54.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129485.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.687 kcal (2) G-P(sol) polarization free energy of solvation -63.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds