Wall clock time and date at job start Mon Mar 30 2020 06:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.50700 * 109.47062 * 179.97438 * 9 7 2 11 11 C 1.38249 * 119.99967 * 269.71897 * 10 9 7 12 12 C 1.38217 * 120.00320 * 179.81310 * 11 10 9 13 13 C 1.38257 * 119.99668 * 0.39802 * 12 11 10 14 14 C 1.38223 * 119.99861 * 359.85768 * 13 12 11 15 15 C 1.50697 * 119.99687 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.46650 * 184.97555 * 15 14 13 17 17 F 1.39903 * 109.47565 * 304.97755 * 15 14 13 18 18 C 1.52999 * 109.47380 * 64.98173 * 15 14 13 19 19 F 1.39903 * 109.47113 * 59.99306 * 18 15 14 20 20 F 1.39898 * 109.47350 * 179.97438 * 18 15 14 21 21 F 1.39898 * 109.46884 * 300.00049 * 18 15 14 22 22 C 1.38218 * 119.99846 * 89.99972 * 10 9 7 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.08006 * 120.00293 * 0.02562 * 11 10 9 27 27 H 1.07998 * 120.00348 * 180.23309 * 12 11 10 28 28 H 1.07998 * 120.00451 * 179.83041 * 13 12 11 29 29 H 1.07998 * 120.00226 * 359.97171 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2304 -3.6446 -0.0133 11 6 2.6698 -4.1705 -1.2140 12 6 3.5709 -5.2185 -1.2209 13 6 4.0267 -5.7462 -0.0270 14 6 3.5833 -5.2237 1.1734 15 6 4.0796 -5.7993 2.4747 16 1 3.5577 -5.3234 3.3049 17 9 3.8359 -7.1767 2.4986 18 6 5.5828 -5.5451 2.6045 19 9 5.8265 -4.1676 2.5806 20 9 6.0434 -6.0789 3.8128 21 9 6.2527 -6.1556 1.5389 22 6 2.6848 -4.1730 1.1803 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.3115 -3.7603 -2.1467 27 1 3.9171 -5.6269 -2.1589 28 1 4.7287 -6.5668 -0.0323 29 1 2.3385 -3.7648 2.1182 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261129487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:15 Heat of formation + Delta-G solvation = -208.307204 kcal Electronic energy + Delta-G solvation = -19550.994662 eV Core-core repulsion = 15744.156832 eV Total energy + Delta-G solvation = -3806.837830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.41776 -49.34649 -48.82854 -48.59880 -40.39143 -36.00140 -34.06502 -32.78662 -29.82476 -28.56429 -25.36762 -24.96030 -23.19972 -21.89960 -19.84311 -19.73515 -19.28719 -18.86327 -17.70309 -17.28935 -16.76955 -15.82845 -15.74709 -15.61265 -15.57844 -15.53322 -15.25971 -15.19886 -14.96172 -14.92004 -14.85962 -14.09286 -13.55922 -13.42833 -13.36343 -13.00059 -12.57051 -12.49577 -11.97306 -11.96612 -11.67580 -11.02760 -10.58369 -9.98391 -9.60487 -8.67539 -6.42101 0.10738 0.43585 1.33246 1.53415 1.60310 1.80252 2.34610 2.52113 2.56867 2.64208 2.87850 3.13187 3.22014 3.52020 3.75409 4.00165 4.09219 4.20181 4.44347 4.55489 4.76279 4.96809 5.07577 5.12818 5.33052 5.43458 5.81535 5.87124 5.98497 6.14468 6.54049 7.37539 8.70360 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.025315 B = 0.005639 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.791968 B = 4964.050079 C = 5436.081146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.032 4.032 3 Si 1.114 2.886 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.604 4.604 8 H 0.046 0.954 9 C 0.040 3.960 10 C -0.064 4.064 11 C -0.113 4.113 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.152 4.152 15 C 0.116 3.884 16 H 0.161 0.839 17 F -0.175 7.175 18 C 0.439 3.561 19 F -0.173 7.173 20 F -0.173 7.173 21 F -0.174 7.174 22 C -0.094 4.094 23 H 0.258 0.742 24 H 0.005 0.995 25 H 0.003 0.997 26 H 0.121 0.879 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -12.992 3.830 17.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.230 4.230 3 Si 0.936 3.064 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.642 4.642 8 H 0.064 0.936 9 C 0.004 3.996 10 C -0.065 4.065 11 C -0.131 4.131 12 C -0.130 4.130 13 C -0.127 4.127 14 C -0.152 4.152 15 C 0.078 3.922 16 H 0.178 0.822 17 F -0.156 7.156 18 C 0.384 3.616 19 F -0.154 7.154 20 F -0.154 7.154 21 F -0.156 7.156 22 C -0.112 4.112 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.021 0.979 26 H 0.139 0.861 27 H 0.174 0.826 28 H 0.164 0.836 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.503 -11.408 3.841 15.975 hybrid contribution 0.000 -1.580 -0.028 1.580 sum 10.504 -12.988 3.813 17.133 Atomic orbital electron populations 1.70920 1.07854 1.30016 1.48397 1.27331 0.96531 1.06451 0.92654 0.82962 0.74170 0.71284 0.78027 1.20770 1.19488 1.19564 1.22209 0.94302 0.92249 1.55440 0.93553 1.18284 0.93537 0.92263 0.95557 1.20209 0.97410 0.95044 0.93794 1.21336 0.97633 0.96475 0.97617 1.21370 0.96573 0.95865 0.99180 1.21258 0.99723 1.00177 0.91531 1.19683 1.02041 0.99676 0.93845 1.21431 0.90084 0.79410 1.01243 0.82209 1.92943 1.94532 1.30258 1.97829 1.20937 0.91742 0.74711 0.74200 1.93250 1.95249 1.30770 1.96146 1.93226 1.90658 1.86065 1.45457 1.93182 1.82907 1.82962 1.56522 1.20875 0.96758 0.95166 0.98429 0.93289 0.97708 0.97866 0.86084 0.82608 0.83618 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.65 21.45 0.29 -56.28 15 2 C -0.03 -1.79 5.46 84.65 0.46 -1.33 15 3 Si 1.11 49.48 29.90 68.60 2.05 51.53 15 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 7 C -0.60 -33.72 9.09 25.60 0.23 -33.49 15 8 H 0.05 2.58 7.74 -2.91 -0.02 2.56 15 9 C 0.04 2.05 4.42 29.10 0.13 2.18 15 10 C -0.06 -2.68 5.07 -19.87 -0.10 -2.78 15 11 C -0.11 -4.06 9.70 22.27 0.22 -3.84 15 12 C -0.11 -3.22 10.05 22.27 0.22 -2.99 15 13 C -0.11 -3.03 8.71 22.27 0.19 -2.84 15 14 C -0.15 -4.47 4.78 -19.87 -0.09 -4.56 15 15 C 0.12 2.71 3.58 29.85 0.11 2.82 15 16 H 0.16 2.93 7.89 -2.39 -0.02 2.91 15 17 F -0.18 -4.21 16.89 44.97 0.76 -3.45 15 18 C 0.44 10.56 2.90 71.98 0.21 10.77 15 19 F -0.17 -4.74 17.02 44.97 0.77 -3.98 15 20 F -0.17 -3.93 17.30 44.97 0.78 -3.16 15 21 F -0.17 -4.30 15.03 44.97 0.68 -3.62 15 22 C -0.09 -3.35 9.33 22.27 0.21 -3.15 15 23 H 0.26 15.68 7.22 -92.71 -0.67 15.01 15 24 H 0.00 0.25 7.96 -2.39 -0.02 0.23 15 25 H 0.00 0.17 7.94 -2.39 -0.02 0.15 15 26 H 0.12 4.29 8.06 -2.91 -0.02 4.27 15 27 H 0.16 3.34 8.06 -2.91 -0.02 3.32 15 28 H 0.15 3.39 6.79 -2.91 -0.02 3.37 15 29 H 0.13 4.32 7.95 -2.91 -0.02 4.30 15 Total: -1.00 -63.19 273.81 8.39 -54.80 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.28 Total: 3.37 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 1.78 Total: -39.20 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.29 Total: -56.28 kcal Atomic # 9 Polarization: -17.18 SS G_CDS: 2.98 Total: -14.20 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -63.19 8.39 -54.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.509 kcal (2) G-P(sol) polarization free energy of solvation -63.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds