Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48507 * 109.46871 * 269.99970 * 3 2 1 5 5 H 1.48503 * 109.47414 * 29.99517 * 3 2 1 6 6 H 1.48497 * 109.47296 * 149.99980 * 3 2 1 7 7 C 1.37875 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47338 * 179.97438 * 9 7 2 11 11 C 1.38260 * 120.00075 * 265.02639 * 10 9 7 12 12 C 1.38211 * 120.00008 * 179.97438 * 11 10 9 13 13 C 1.38258 * 120.00175 * 359.79887 * 12 11 10 14 14 C 1.38211 * 119.99774 * 0.43545 * 13 12 11 15 15 C 1.38215 * 120.00244 * 84.99485 * 10 9 7 16 16 C 1.50702 * 119.99534 * 0.02562 * 15 10 9 17 17 F 1.39900 * 109.47051 * 299.97159 * 16 15 10 18 18 F 1.39894 * 109.47510 * 59.97499 * 16 15 10 19 19 C 1.53002 * 109.46602 * 179.97438 * 16 15 10 20 20 F 1.39904 * 109.47112 * 179.97438 * 19 16 15 21 21 F 1.39900 * 109.46888 * 299.99451 * 19 16 15 22 22 H 0.96999 * 119.99929 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47611 * 59.99567 * 9 7 2 24 24 H 1.09002 * 109.47197 * 299.99718 * 9 7 2 25 25 H 1.08001 * 119.99600 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.99444 * 180.02562 * 12 11 10 27 27 H 1.07998 * 119.99848 * 180.23501 * 13 12 11 28 28 H 1.08002 * 120.00200 * 179.80765 * 14 13 12 29 29 H 1.08999 * 109.47666 * 60.00053 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6006 -4.2375 -1.1923 12 6 3.4991 -5.2877 -1.1923 13 6 4.0308 -5.7427 0.0001 14 6 3.6569 -5.1531 1.1929 15 6 2.7587 -4.1020 1.1929 16 6 2.3552 -3.4556 2.4931 17 9 2.7025 -2.1007 2.4677 18 9 0.9725 -3.5795 2.6661 19 6 3.0780 -4.1458 3.6516 20 9 2.7039 -3.5454 4.8586 21 9 2.7306 -5.5008 3.6769 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 2.1877 -3.8799 -2.1240 26 1 3.7886 -5.7505 -2.1242 27 1 4.7357 -6.5608 -0.0004 28 1 4.0698 -5.5105 2.1247 29 1 4.1553 -4.0494 3.5169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261133528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -172.587770 kcal Electronic energy + Delta-G solvation = -20467.993203 eV Core-core repulsion = 16662.704284 eV Total energy + Delta-G solvation = -3805.288919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.54438 -48.14933 -47.22129 -46.42775 -38.93609 -33.55024 -32.37004 -31.37734 -28.46060 -26.97198 -23.92658 -23.34088 -21.22278 -20.52334 -18.14302 -17.77650 -17.60862 -16.37784 -16.36675 -16.17825 -15.42317 -14.70438 -14.47376 -14.05509 -13.96840 -13.88140 -13.41435 -13.30691 -12.81071 -12.69554 -12.57917 -12.56207 -12.14001 -11.84573 -11.33940 -11.26097 -11.11737 -10.71687 -10.55162 -10.04673 -9.65136 -9.46956 -8.69509 -8.39685 -8.10361 -6.02485 -4.04833 1.50649 1.83062 3.02746 3.31796 3.38335 3.42582 3.84333 4.01250 4.11629 4.26924 4.43068 4.48286 5.06467 5.16486 5.30350 5.34051 5.48433 5.50266 5.79396 5.95311 6.18732 6.44282 6.68360 6.78181 6.88418 7.31171 7.51262 7.65135 7.91469 8.25906 8.96524 9.57490 11.08185 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.009322 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.915739 B = 3003.084193 C = 3903.920253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.029 3.971 10 C 0.014 3.986 11 C -0.127 4.127 12 C -0.097 4.097 13 C -0.150 4.150 14 C -0.096 4.096 15 C -0.177 4.177 16 C 0.315 3.685 17 F -0.148 7.148 18 F -0.174 7.174 19 C 0.231 3.769 20 F -0.186 7.186 21 F -0.182 7.182 22 H 0.262 0.738 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.127 0.873 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.935 -10.443 3.260 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.539 4.539 8 H 0.076 0.924 9 C -0.008 4.008 10 C 0.014 3.986 11 C -0.145 4.145 12 C -0.115 4.115 13 C -0.168 4.168 14 C -0.115 4.115 15 C -0.177 4.177 16 C 0.277 3.723 17 F -0.128 7.128 18 F -0.155 7.155 19 C 0.176 3.824 20 F -0.168 7.168 21 F -0.163 7.163 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.145 0.855 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.727 -10.298 3.311 13.293 hybrid contribution 0.258 1.003 0.113 1.041 sum 7.985 -9.295 3.424 12.723 Atomic orbital electron populations 1.69953 1.06016 1.26804 1.50366 1.24938 0.94825 0.99129 0.95144 0.86555 0.79975 0.83287 0.78041 1.20673 1.21141 1.19713 1.20856 0.92797 0.89242 1.51051 0.92442 1.18691 0.92801 0.89468 0.99795 1.20579 0.93704 0.93655 0.90675 1.21152 0.98819 0.96419 0.98150 1.21244 0.96167 0.96279 0.97781 1.20843 1.02227 1.01524 0.92237 1.21028 0.96658 0.94918 0.98845 1.19764 1.04110 1.00651 0.93225 1.20017 0.78217 0.80920 0.93112 1.93252 1.91357 1.31347 1.96864 1.93067 1.30684 1.95763 1.95945 1.22916 1.01327 0.75985 0.82154 1.93046 1.93526 1.83106 1.47074 1.93012 1.94124 1.32780 1.96428 0.92841 0.94846 0.93700 0.85463 0.86238 0.86146 0.85957 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.83 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 7 C -0.50 -13.84 7.19 -34.44 -0.25 -14.09 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.03 0.75 4.46 -29.04 -0.13 0.62 15 10 C 0.01 0.30 5.04 -104.62 -0.53 -0.23 15 11 C -0.13 -2.31 9.68 -39.58 -0.38 -2.69 15 12 C -0.10 -1.42 10.05 -39.58 -0.40 -1.82 15 13 C -0.15 -2.08 10.05 -39.58 -0.40 -2.48 15 14 C -0.10 -1.47 8.56 -39.58 -0.34 -1.81 15 15 C -0.18 -3.36 5.29 -104.62 -0.55 -3.92 15 16 C 0.32 6.15 1.35 -27.88 -0.04 6.11 15 17 F -0.15 -3.32 14.63 2.25 0.03 -3.28 15 18 F -0.17 -3.82 15.03 2.25 0.03 -3.79 15 19 C 0.23 3.46 4.00 37.16 0.15 3.61 15 20 F -0.19 -3.02 17.30 2.25 0.04 -2.98 15 21 F -0.18 -2.68 15.20 2.25 0.03 -2.65 15 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 23 H 0.03 0.89 8.05 -51.93 -0.42 0.47 15 24 H 0.04 1.24 5.75 -51.93 -0.30 0.95 15 25 H 0.13 2.20 8.06 -52.49 -0.42 1.77 15 26 H 0.12 1.37 8.06 -52.48 -0.42 0.95 15 27 H 0.12 1.27 8.06 -52.49 -0.42 0.85 15 28 H 0.12 1.51 5.26 -52.49 -0.28 1.23 15 29 H 0.14 1.50 7.51 -51.93 -0.39 1.11 15 LS Contribution 264.22 15.07 3.98 3.98 Total: -1.00 -30.93 264.22 -5.32 -36.25 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -2.19 Total: -3.37 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -2.96 Total: -15.06 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 9 Polarization: -12.84 SS G_CDS: 0.14 Total: -12.70 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.93 -5.32 -36.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.340 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds