Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48507 * 109.46871 * 269.99970 * 3 2 1 5 5 H 1.48503 * 109.47414 * 29.99517 * 3 2 1 6 6 H 1.48497 * 109.47296 * 149.99980 * 3 2 1 7 7 C 1.37875 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99874 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47338 * 179.97438 * 9 7 2 11 11 C 1.38260 * 120.00075 * 265.02639 * 10 9 7 12 12 C 1.38211 * 120.00008 * 179.97438 * 11 10 9 13 13 C 1.38258 * 120.00175 * 359.79887 * 12 11 10 14 14 C 1.38211 * 119.99774 * 0.43545 * 13 12 11 15 15 C 1.38215 * 120.00244 * 84.99485 * 10 9 7 16 16 C 1.50702 * 119.99534 * 0.02562 * 15 10 9 17 17 F 1.39900 * 109.47051 * 299.97159 * 16 15 10 18 18 F 1.39894 * 109.47510 * 59.97499 * 16 15 10 19 19 C 1.53002 * 109.46602 * 179.97438 * 16 15 10 20 20 F 1.39904 * 109.47112 * 179.97438 * 19 16 15 21 21 F 1.39900 * 109.46888 * 299.99451 * 19 16 15 22 22 H 0.96999 * 119.99929 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47611 * 59.99567 * 9 7 2 24 24 H 1.09002 * 109.47197 * 299.99718 * 9 7 2 25 25 H 1.08001 * 119.99600 * 359.97438 * 11 10 9 26 26 H 1.08003 * 119.99444 * 180.02562 * 12 11 10 27 27 H 1.07998 * 119.99848 * 180.23501 * 13 12 11 28 28 H 1.08002 * 120.00200 * 179.80765 * 14 13 12 29 29 H 1.08999 * 109.47666 * 60.00053 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6006 -4.2375 -1.1923 12 6 3.4991 -5.2877 -1.1923 13 6 4.0308 -5.7427 0.0001 14 6 3.6569 -5.1531 1.1929 15 6 2.7587 -4.1020 1.1929 16 6 2.3552 -3.4556 2.4931 17 9 2.7025 -2.1007 2.4677 18 9 0.9725 -3.5795 2.6661 19 6 3.0780 -4.1458 3.6516 20 9 2.7039 -3.5454 4.8586 21 9 2.7306 -5.5008 3.6769 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 2.1877 -3.8799 -2.1240 26 1 3.7886 -5.7505 -2.1242 27 1 4.7357 -6.5608 -0.0004 28 1 4.0698 -5.5105 2.1247 29 1 4.1553 -4.0494 3.5169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261133528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -190.319136 kcal Electronic energy + Delta-G solvation = -20468.762092 eV Core-core repulsion = 16662.704284 eV Total energy + Delta-G solvation = -3806.057809 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.88052 -49.60142 -48.50717 -47.99262 -40.27012 -35.49985 -33.70060 -33.11328 -29.81971 -28.72248 -25.36746 -25.09453 -22.60418 -21.98003 -19.45036 -19.09974 -18.99527 -18.52274 -17.70770 -17.63685 -16.87338 -16.27373 -16.08569 -15.47033 -15.26822 -15.16430 -15.00076 -14.67639 -14.48302 -14.42919 -14.06563 -13.98832 -13.52273 -13.42667 -13.24897 -12.84340 -12.64123 -12.49206 -12.33629 -11.60306 -11.51448 -11.32429 -10.58245 -9.96784 -9.55603 -8.19165 -6.28800 0.21261 0.51787 1.36874 1.39060 1.49813 1.71993 2.39395 2.66570 2.72978 2.80979 2.98609 3.13513 3.21852 3.75793 3.99519 4.07228 4.13867 4.24446 4.53425 4.64266 4.89738 5.06732 5.21110 5.35020 5.41666 5.55989 5.73758 5.85698 6.03486 6.15894 6.79979 7.37349 8.91723 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.009322 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.915739 B = 3003.084193 C = 3903.920253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.030 4.030 11 C -0.144 4.144 12 C -0.085 4.085 13 C -0.131 4.131 14 C -0.090 4.090 15 C -0.192 4.192 16 C 0.291 3.709 17 F -0.174 7.174 18 F -0.200 7.200 19 C 0.245 3.755 20 F -0.195 7.195 21 F -0.178 7.178 22 H 0.263 0.737 23 H 0.003 0.997 24 H 0.012 0.988 25 H 0.121 0.879 26 H 0.160 0.840 27 H 0.171 0.829 28 H 0.159 0.841 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.203 -12.356 3.304 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.030 4.030 11 C -0.162 4.162 12 C -0.102 4.102 13 C -0.149 4.149 14 C -0.108 4.108 15 C -0.192 4.192 16 C 0.253 3.747 17 F -0.155 7.155 18 F -0.181 7.181 19 C 0.191 3.809 20 F -0.176 7.176 21 F -0.159 7.159 22 H 0.072 0.928 23 H 0.021 0.979 24 H 0.030 0.970 25 H 0.139 0.861 26 H 0.178 0.822 27 H 0.188 0.812 28 H 0.176 0.824 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 11.006 -12.225 3.351 16.787 hybrid contribution -0.754 1.464 0.064 1.648 sum 10.252 -10.761 3.415 15.250 Atomic orbital electron populations 1.70093 1.07720 1.27657 1.51981 1.25857 0.95652 1.02982 0.94967 0.85535 0.78758 0.78782 0.78611 1.19364 1.20926 1.18874 1.21127 0.92713 0.90444 1.49777 0.92659 1.18348 0.93281 0.91538 0.96606 1.20270 0.95237 0.94189 0.93351 1.21222 1.00264 0.97941 0.96768 1.21662 0.94016 0.94311 1.00233 1.21470 1.01197 1.01333 0.90883 1.21448 0.94975 0.93073 1.01296 1.19865 1.05401 1.02136 0.91839 1.20806 0.77460 0.80280 0.96117 1.93172 1.91432 1.33649 1.97215 1.93002 1.33116 1.95785 1.96221 1.23066 1.02809 0.75282 0.79745 1.93030 1.93817 1.83394 1.47376 1.93021 1.94339 1.32257 1.96242 0.92839 0.97907 0.97012 0.86131 0.82232 0.81158 0.82369 0.79092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 13.29 21.45 0.28 -58.04 15 2 C 0.00 0.17 5.46 84.65 0.46 0.63 15 3 Si 0.96 45.59 29.54 68.60 2.03 47.61 15 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 6 H -0.26 -12.12 7.11 99.48 0.71 -11.41 15 7 C -0.50 -28.96 7.19 25.60 0.18 -28.77 15 8 H 0.06 3.13 7.74 -2.91 -0.02 3.10 15 9 C 0.04 2.15 4.46 29.10 0.13 2.28 15 10 C -0.03 -1.32 5.04 -19.86 -0.10 -1.42 15 11 C -0.14 -5.15 9.68 22.27 0.22 -4.94 15 12 C -0.08 -2.15 10.05 22.27 0.22 -1.92 15 13 C -0.13 -2.90 10.05 22.27 0.22 -2.67 15 14 C -0.09 -2.38 8.56 22.27 0.19 -2.19 15 15 C -0.19 -7.14 5.29 -19.86 -0.11 -7.24 15 16 C 0.29 11.41 1.35 29.85 0.04 11.45 15 17 F -0.17 -8.04 14.63 44.97 0.66 -7.38 15 18 F -0.20 -9.28 15.03 44.97 0.68 -8.60 15 19 C 0.25 6.77 4.00 71.98 0.29 7.05 15 20 F -0.20 -6.07 17.30 44.97 0.78 -5.29 15 21 F -0.18 -4.68 15.20 44.97 0.68 -3.99 15 22 H 0.26 15.46 8.31 -92.71 -0.77 14.69 15 23 H 0.00 0.15 8.05 -2.39 -0.02 0.13 15 24 H 0.01 0.71 5.75 -2.39 -0.01 0.69 15 25 H 0.12 4.29 8.06 -2.91 -0.02 4.27 15 26 H 0.16 2.78 8.06 -2.91 -0.02 2.76 15 27 H 0.17 2.19 8.06 -2.91 -0.02 2.17 15 28 H 0.16 2.98 5.26 -2.91 -0.02 2.96 15 29 H 0.19 3.29 7.51 -2.39 -0.02 3.27 15 Total: -1.00 -72.86 264.22 8.05 -64.81 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: 1.19 Total: -1.37 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 1.75 Total: -27.75 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.28 Total: -58.04 kcal Atomic # 9 Polarization: -28.06 SS G_CDS: 2.80 Total: -25.27 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.86 8.05 -64.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261133528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.506 kcal (2) G-P(sol) polarization free energy of solvation -72.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds