Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47156 * 239.99504 * 3 2 1 5 5 H 1.48500 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47640 * 119.99257 * 3 2 1 7 7 C 1.37875 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46981 * 59.99796 * 9 7 2 11 11 O 1.42895 * 109.47125 * 180.02562 * 9 7 2 12 12 C 1.35982 * 116.99872 * 205.57916 * 11 9 7 13 13 C 1.38697 * 120.00022 * 184.66149 * 12 11 9 14 14 C 1.38139 * 119.99850 * 179.76623 * 13 12 11 15 15 C 1.38698 * 119.99903 * 0.48905 * 14 13 12 16 16 O 1.35982 * 119.99864 * 179.76622 * 15 14 13 17 17 C 1.38701 * 120.00035 * 359.78669 * 15 14 13 18 18 C 1.38127 * 119.99896 * 359.95702 * 17 15 14 19 19 C 1.53001 * 109.47219 * 300.00215 * 9 7 2 20 20 F 1.39905 * 109.47259 * 59.99773 * 19 9 7 21 21 F 1.39900 * 109.47417 * 179.97438 * 19 9 7 22 22 F 1.39902 * 109.47023 * 299.99594 * 19 9 7 23 23 H 0.97005 * 119.99877 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.00264 * 359.97438 * 13 12 11 25 25 H 1.08002 * 119.99971 * 180.25090 * 14 13 12 26 26 H 0.96702 * 114.00274 * 270.02133 * 16 15 14 27 27 H 1.07998 * 119.99887 * 179.97438 * 17 15 14 28 28 H 1.08001 * 119.99762 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 2.1797 -3.5853 0.0017 12 6 1.7506 -4.7649 -0.5212 13 6 2.5652 -5.8860 -0.4641 14 6 2.1274 -7.0855 -0.9911 15 6 0.8772 -7.1663 -1.5862 16 8 0.4481 -8.3459 -2.1091 17 6 0.0648 -6.0438 -1.6484 18 6 0.5005 -4.8457 -1.1167 19 6 0.3709 -2.5800 1.2494 20 9 -0.5383 -1.5166 1.2488 21 9 -0.3290 -3.7913 1.2492 22 9 1.1747 -2.5057 2.3920 23 1 -0.4850 0.8401 -0.0004 24 1 3.5406 -5.8219 -0.0048 25 1 2.7601 -7.9594 -0.9430 26 1 0.6811 -8.4718 -3.0392 27 1 -0.9085 -6.1066 -2.1121 28 1 -0.1322 -3.9718 -1.1648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134608.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = -187.331468 kcal Electronic energy + Delta-G solvation = -20334.077846 eV Core-core repulsion = 16515.776803 eV Total energy + Delta-G solvation = -3818.301043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.56753 -46.22497 -45.81043 -39.76332 -38.01696 -35.55329 -33.28365 -30.84139 -29.44375 -27.86714 -24.76946 -23.03603 -22.18894 -20.93912 -18.31639 -17.89323 -17.32113 -16.93441 -16.52394 -16.21643 -15.28774 -15.07654 -14.66723 -14.21694 -13.76528 -13.31283 -13.13505 -13.02596 -12.80365 -12.57609 -12.40392 -12.28414 -12.08766 -12.01718 -11.43192 -11.24539 -11.17340 -10.93262 -10.45134 -10.34193 -9.92560 -9.48780 -8.76941 -8.74801 -7.57870 -6.37906 -4.58862 1.60145 1.63978 3.16052 3.20219 3.22712 3.80562 3.93598 4.18545 4.31899 4.48348 4.77789 5.13985 5.19852 5.43043 5.59614 5.62401 5.73760 5.88139 6.10469 6.24402 6.31743 6.51677 6.69732 6.74600 6.95389 7.41108 7.51723 7.81183 8.06772 8.51518 9.07624 10.54863 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.032154 B = 0.006547 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.613240 B = 4275.800994 C = 4505.904019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.062 3.938 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.085 0.915 9 C 0.184 3.816 10 H 0.074 0.926 11 O -0.295 6.295 12 C 0.135 3.865 13 C -0.146 4.146 14 C -0.109 4.109 15 C 0.046 3.954 16 O -0.500 6.500 17 C -0.102 4.102 18 C -0.184 4.184 19 C 0.407 3.593 20 F -0.132 7.132 21 F -0.223 7.223 22 F -0.198 7.198 23 H 0.271 0.729 24 H 0.132 0.868 25 H 0.129 0.871 26 H 0.380 0.620 27 H 0.126 0.874 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -8.086 -3.626 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.146 4.146 3 Si 0.750 3.250 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.103 0.897 9 C 0.127 3.873 10 H 0.091 0.909 11 O -0.208 6.208 12 C 0.089 3.911 13 C -0.164 4.164 14 C -0.127 4.127 15 C 0.002 3.998 16 O -0.309 6.309 17 C -0.121 4.121 18 C -0.202 4.202 19 C 0.352 3.648 20 F -0.113 7.113 21 F -0.205 7.205 22 F -0.180 7.180 23 H 0.082 0.918 24 H 0.150 0.850 25 H 0.147 0.853 26 H 0.234 0.766 27 H 0.144 0.856 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.934 -7.969 -2.937 8.544 hybrid contribution 0.040 0.866 -0.179 0.885 sum 0.975 -7.103 -3.117 7.817 Atomic orbital electron populations 1.70357 1.05909 1.27901 1.43858 1.25097 0.95295 1.00244 0.93937 0.86106 0.79233 0.80392 0.79254 1.19531 1.20741 1.19554 1.20685 0.94666 0.86548 1.55218 0.89740 1.21371 0.88969 0.85575 0.91344 0.90919 1.86254 1.41515 1.17579 1.75403 1.19286 0.92595 0.87076 0.92162 1.20285 1.00848 0.90315 1.04987 1.21082 0.95144 0.97175 0.99310 1.18259 0.93485 0.85433 1.02669 1.84874 1.80187 1.35649 1.30178 1.21145 0.99760 0.91437 0.99755 1.21360 0.96971 0.99254 1.02636 1.23388 0.80717 0.72846 0.87889 1.93435 1.68161 1.53498 1.96217 1.93067 1.81646 1.48749 1.97014 1.93029 1.74190 1.96053 1.54734 0.91822 0.84984 0.85349 0.76647 0.85593 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.47 9.50 55.43 0.53 -21.95 15 2 C 0.06 1.60 5.20 -17.82 -0.09 1.51 15 3 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 15 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.53 -14.09 8.62 -34.44 -0.30 -14.38 15 8 H 0.08 2.20 7.81 -52.49 -0.41 1.79 15 9 C 0.18 4.57 2.02 -27.88 -0.06 4.52 15 10 H 0.07 1.80 5.77 -51.93 -0.30 1.50 15 11 O -0.29 -6.82 9.72 -19.68 -0.19 -7.01 15 12 C 0.14 2.71 6.17 -39.24 -0.24 2.47 15 13 C -0.15 -2.46 9.98 -39.45 -0.39 -2.85 15 14 C -0.11 -1.60 9.98 -39.45 -0.39 -2.00 15 15 C 0.05 0.69 6.70 -39.24 -0.26 0.43 15 16 O -0.50 -6.45 13.50 -19.68 -0.27 -6.71 15 17 C -0.10 -1.66 9.98 -39.45 -0.39 -2.05 15 18 C -0.18 -3.46 7.59 -39.45 -0.30 -3.76 15 19 C 0.41 10.24 2.83 37.16 0.11 10.35 15 20 F -0.13 -3.52 12.91 2.25 0.03 -3.49 15 21 F -0.22 -5.24 14.77 2.25 0.03 -5.21 15 22 F -0.20 -5.10 16.97 2.25 0.04 -5.06 15 23 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 24 H 0.13 2.00 8.06 -52.49 -0.42 1.58 15 25 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 26 H 0.38 2.93 9.06 45.56 0.41 3.35 15 27 H 0.13 1.77 8.06 -52.49 -0.42 1.35 15 28 H 0.14 2.71 5.43 -52.49 -0.29 2.43 15 LS Contribution 257.88 15.07 3.89 3.89 Total: -1.00 -28.83 257.88 -4.28 -33.10 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -0.98 Total: 3.16 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.33 Total: -5.78 kcal Atomic # 7 Polarization: -22.47 SS G_CDS: 0.53 Total: -21.95 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.46 Total: -13.73 kcal Atomic # 9 Polarization: -13.85 SS G_CDS: 0.10 Total: -13.75 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.83 -4.28 -33.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134608.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.230 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds