Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47156 * 239.99504 * 3 2 1 5 5 H 1.48500 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47640 * 119.99257 * 3 2 1 7 7 C 1.37875 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99972 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46981 * 59.99796 * 9 7 2 11 11 O 1.42895 * 109.47125 * 180.02562 * 9 7 2 12 12 C 1.35982 * 116.99872 * 205.57916 * 11 9 7 13 13 C 1.38697 * 120.00022 * 184.66149 * 12 11 9 14 14 C 1.38139 * 119.99850 * 179.76623 * 13 12 11 15 15 C 1.38698 * 119.99903 * 0.48905 * 14 13 12 16 16 O 1.35982 * 119.99864 * 179.76622 * 15 14 13 17 17 C 1.38701 * 120.00035 * 359.78669 * 15 14 13 18 18 C 1.38127 * 119.99896 * 359.95702 * 17 15 14 19 19 C 1.53001 * 109.47219 * 300.00215 * 9 7 2 20 20 F 1.39905 * 109.47259 * 59.99773 * 19 9 7 21 21 F 1.39900 * 109.47417 * 179.97438 * 19 9 7 22 22 F 1.39902 * 109.47023 * 299.99594 * 19 9 7 23 23 H 0.97005 * 119.99877 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.00264 * 359.97438 * 13 12 11 25 25 H 1.08002 * 119.99971 * 180.25090 * 14 13 12 26 26 H 0.96702 * 114.00274 * 270.02133 * 16 15 14 27 27 H 1.07998 * 119.99887 * 179.97438 * 17 15 14 28 28 H 1.08001 * 119.99762 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 2.1797 -3.5853 0.0017 12 6 1.7506 -4.7649 -0.5212 13 6 2.5652 -5.8860 -0.4641 14 6 2.1274 -7.0855 -0.9911 15 6 0.8772 -7.1663 -1.5862 16 8 0.4481 -8.3459 -2.1091 17 6 0.0648 -6.0438 -1.6484 18 6 0.5005 -4.8457 -1.1167 19 6 0.3709 -2.5800 1.2494 20 9 -0.5383 -1.5166 1.2488 21 9 -0.3290 -3.7913 1.2492 22 9 1.1747 -2.5057 2.3920 23 1 -0.4850 0.8401 -0.0004 24 1 3.5406 -5.8219 -0.0048 25 1 2.7601 -7.9594 -0.9430 26 1 0.6811 -8.4718 -3.0392 27 1 -0.9085 -6.1066 -2.1121 28 1 -0.1322 -3.9718 -1.1648 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134608.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = -206.222130 kcal Electronic energy + Delta-G solvation = -20334.897006 eV Core-core repulsion = 16515.776803 eV Total energy + Delta-G solvation = -3819.120204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.57575 -48.21837 -47.86582 -41.16912 -39.39184 -36.85909 -35.19753 -32.19854 -31.16599 -29.32813 -26.75453 -24.63140 -23.57027 -22.53493 -19.90507 -19.25106 -19.19826 -18.90852 -18.39010 -17.93351 -16.94136 -16.50202 -16.15790 -15.56743 -15.41593 -15.03099 -15.02338 -14.65959 -14.54472 -14.42899 -14.36881 -14.11495 -13.89020 -13.51341 -13.12147 -12.81830 -12.72106 -12.68169 -12.15896 -11.94011 -11.40094 -11.24447 -10.70395 -10.03881 -8.99011 -8.33404 -6.62310 0.30636 0.33008 1.42790 1.45854 1.54340 2.13086 2.28943 2.45466 2.66675 2.81298 3.35859 3.50236 3.64091 3.86382 3.93047 4.00849 4.26146 4.42627 4.60507 4.69935 5.00437 5.16101 5.32280 5.43021 5.50497 5.55204 5.70090 6.32383 6.58297 6.94212 7.08567 8.59712 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.032154 B = 0.006547 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.613240 B = 4275.800994 C = 4505.904019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.020 3.980 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.191 3.809 10 H 0.065 0.935 11 O -0.313 6.313 12 C 0.092 3.908 13 C -0.144 4.144 14 C -0.101 4.101 15 C 0.064 3.936 16 O -0.502 6.502 17 C -0.109 4.109 18 C -0.197 4.197 19 C 0.406 3.594 20 F -0.143 7.143 21 F -0.214 7.214 22 F -0.203 7.203 23 H 0.274 0.726 24 H 0.146 0.854 25 H 0.165 0.835 26 H 0.408 0.592 27 H 0.145 0.855 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.802 -9.394 -4.313 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.097 0.903 9 C 0.133 3.867 10 H 0.083 0.917 11 O -0.226 6.226 12 C 0.047 3.953 13 C -0.163 4.163 14 C -0.119 4.119 15 C 0.019 3.981 16 O -0.314 6.314 17 C -0.127 4.127 18 C -0.216 4.216 19 C 0.351 3.649 20 F -0.124 7.124 21 F -0.196 7.196 22 F -0.185 7.185 23 H 0.084 0.916 24 H 0.164 0.836 25 H 0.183 0.817 26 H 0.266 0.734 27 H 0.163 0.837 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.549 -9.314 -3.654 10.124 hybrid contribution -0.195 1.039 -0.034 1.058 sum 1.354 -8.274 -3.689 9.160 Atomic orbital electron populations 1.70445 1.07100 1.28792 1.44093 1.25934 0.96119 1.03297 0.93132 0.85160 0.78152 0.76362 0.79446 1.18462 1.19876 1.19508 1.20951 0.94684 0.87821 1.56183 0.90281 1.21097 0.88939 0.86087 0.90530 0.91748 1.86185 1.41317 1.18425 1.76702 1.19679 0.94162 0.86889 0.94563 1.20564 1.01063 0.90016 1.04612 1.21438 0.95375 0.97354 0.97699 1.18320 0.92969 0.85496 1.01277 1.84809 1.80164 1.33999 1.32449 1.21358 1.00894 0.90927 0.99544 1.21276 0.96686 0.99791 1.03816 1.23454 0.80671 0.72810 0.87982 1.93404 1.68539 1.54169 1.96278 1.93068 1.81460 1.48107 1.96991 1.93005 1.74365 1.96105 1.55056 0.91575 0.83613 0.81715 0.73417 0.83714 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.85 9.50 21.45 0.20 -46.65 15 2 C 0.02 1.06 5.20 84.65 0.44 1.50 15 3 Si 0.99 41.02 29.54 68.60 2.03 43.05 15 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.56 -30.17 8.62 25.60 0.22 -29.94 15 8 H 0.08 4.22 7.81 -2.91 -0.02 4.20 15 9 C 0.19 9.78 2.02 29.85 0.06 9.84 15 10 H 0.07 3.36 5.77 -2.39 -0.01 3.35 15 11 O -0.31 -14.85 9.72 -93.35 -0.91 -15.76 15 12 C 0.09 3.71 6.17 22.49 0.14 3.85 15 13 C -0.14 -4.65 9.98 22.36 0.22 -4.42 15 14 C -0.10 -2.64 9.98 22.36 0.22 -2.41 15 15 C 0.06 1.73 6.70 22.49 0.15 1.88 15 16 O -0.50 -10.80 13.50 -93.35 -1.26 -12.06 15 17 C -0.11 -3.36 9.98 22.35 0.22 -3.13 15 18 C -0.20 -7.50 7.59 22.35 0.17 -7.33 15 19 C 0.41 20.95 2.83 71.98 0.20 21.16 15 20 F -0.14 -7.79 12.91 44.97 0.58 -7.21 15 21 F -0.21 -10.29 14.77 44.97 0.66 -9.62 15 22 F -0.20 -10.66 16.97 44.97 0.76 -9.90 15 23 H 0.27 13.88 8.31 -92.70 -0.77 13.11 15 24 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 25 H 0.17 3.12 8.06 -2.91 -0.02 3.10 15 26 H 0.41 4.40 9.06 -74.06 -0.67 3.73 15 27 H 0.15 3.80 8.06 -2.91 -0.02 3.78 15 28 H 0.12 4.85 5.43 -2.91 -0.02 4.83 15 Total: -1.00 -61.88 257.88 4.68 -57.20 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.56 Total: 9.97 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 2.05 Total: -9.02 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.20 Total: -46.65 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -2.17 Total: -27.82 kcal Atomic # 9 Polarization: -28.74 SS G_CDS: 2.01 Total: -26.73 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -61.88 4.68 -57.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134608.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.019 kcal (2) G-P(sol) polarization free energy of solvation -61.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds