Wall clock time and date at job start Mon Mar 30 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00342 * 2 1 4 4 H 1.48501 * 109.46740 * 90.00019 * 3 2 1 5 5 H 1.48503 * 109.47284 * 210.00126 * 3 2 1 6 6 H 1.48497 * 109.46992 * 330.00600 * 3 2 1 7 7 C 1.37883 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99951 * 198.52376 * 7 2 1 9 9 C 1.50699 * 119.99835 * 18.51971 * 7 2 1 10 10 H 1.08998 * 109.47693 * 305.51025 * 9 7 2 11 11 O 1.42902 * 109.47197 * 185.50519 * 9 7 2 12 12 C 1.35978 * 117.00248 * 148.40348 * 11 9 7 13 13 C 1.38702 * 120.00212 * 184.85033 * 12 11 9 14 14 C 1.38132 * 119.99637 * 179.77048 * 13 12 11 15 15 C 1.38693 * 120.00189 * 0.49897 * 14 13 12 16 16 O 1.35990 * 119.99954 * 179.72792 * 15 14 13 17 17 C 1.38691 * 120.00209 * 359.74945 * 15 14 13 18 18 C 1.38131 * 120.00182 * 0.02562 * 17 15 14 19 19 C 1.53005 * 109.46989 * 65.51210 * 9 7 2 20 20 F 1.39900 * 109.47511 * 59.91382 * 19 9 7 21 21 F 1.39904 * 109.47158 * 179.91201 * 19 9 7 22 22 F 1.39902 * 109.46919 * 299.91332 * 19 9 7 23 23 H 0.96999 * 120.00105 * 176.32298 * 1 2 3 24 24 H 1.07997 * 119.99964 * 359.97438 * 13 12 11 25 25 H 1.08001 * 119.99745 * 180.22928 * 14 13 12 26 26 H 0.96691 * 113.99895 * 270.02516 * 16 15 14 27 27 H 1.08005 * 120.00503 * 179.97438 * 17 15 14 28 28 H 1.08001 * 120.00487 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0426 -1.2185 0.2966 9 6 1.3095 -2.4652 -0.4156 10 1 0.4082 -2.5987 0.1827 11 8 2.1855 -3.5756 -0.2116 12 6 1.6103 -4.7644 0.1123 13 6 2.4053 -5.8578 0.4226 14 6 1.8208 -7.0641 0.7563 15 6 0.4392 -7.1847 0.7710 16 8 -0.1360 -8.3738 1.0942 17 6 -0.3557 -6.0928 0.4558 18 6 0.2286 -4.8852 0.1266 19 6 0.9310 -2.3795 -1.8957 20 9 2.0875 -2.2063 -2.6636 21 9 0.2875 -3.5603 -2.2816 22 9 0.0718 -1.2936 -2.0951 23 1 -0.4850 -0.8383 -0.0539 24 1 3.4812 -5.7652 0.4064 25 1 2.4398 -7.9145 1.0015 26 1 -0.2905 -8.9547 0.3368 27 1 -1.4316 -6.1868 0.4668 28 1 -0.3903 -4.0350 -0.1193 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134610.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:18 Heat of formation + Delta-G solvation = -206.013652 kcal Electronic energy + Delta-G solvation = -20313.644897 eV Core-core repulsion = 16494.533733 eV Total energy + Delta-G solvation = -3819.111163 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.03397 -46.61135 -46.43280 -39.89052 -38.14523 -35.67944 -33.57756 -30.93063 -29.36159 -27.88497 -24.65086 -23.21638 -22.27542 -21.23639 -18.42053 -18.08343 -17.87528 -17.35873 -17.01492 -16.47325 -15.37921 -15.25634 -14.43405 -13.96554 -13.74539 -13.61535 -13.44114 -13.27213 -13.14579 -12.96853 -12.77096 -12.66696 -12.46625 -12.21664 -11.74400 -11.57209 -11.02474 -10.89039 -10.39194 -10.25503 -10.10959 -9.38187 -8.85941 -8.57928 -7.70958 -6.89430 -4.64688 1.49351 1.53661 3.25360 3.33760 3.49499 3.60993 3.81327 3.95702 4.24030 4.40346 4.72480 5.01098 5.08447 5.12187 5.32352 5.39677 5.47836 5.67153 5.86815 6.07958 6.14344 6.33086 6.58089 6.60855 6.83162 7.21925 7.68061 7.82206 8.18943 8.31483 9.03775 10.47150 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.031532 B = 0.006553 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.785495 B = 4271.606347 C = 4472.614711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.038 3.962 3 Si 1.080 2.920 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.619 4.619 8 H 0.081 0.919 9 C 0.174 3.826 10 H 0.068 0.932 11 O -0.286 6.286 12 C 0.132 3.868 13 C -0.143 4.143 14 C -0.107 4.107 15 C 0.048 3.952 16 O -0.499 6.499 17 C -0.102 4.102 18 C -0.187 4.187 19 C 0.406 3.594 20 F -0.185 7.185 21 F -0.212 7.212 22 F -0.170 7.170 23 H 0.274 0.726 24 H 0.134 0.866 25 H 0.130 0.870 26 H 0.381 0.619 27 H 0.127 0.873 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 -9.791 -1.008 9.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.172 4.172 3 Si 0.905 3.095 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.655 4.655 8 H 0.099 0.901 9 C 0.116 3.884 10 H 0.085 0.915 11 O -0.199 6.199 12 C 0.086 3.914 13 C -0.161 4.161 14 C -0.126 4.126 15 C 0.004 3.996 16 O -0.308 6.308 17 C -0.120 4.120 18 C -0.205 4.205 19 C 0.351 3.649 20 F -0.167 7.167 21 F -0.194 7.194 22 F -0.152 7.152 23 H 0.086 0.914 24 H 0.152 0.848 25 H 0.148 0.852 26 H 0.235 0.765 27 H 0.145 0.855 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.627 -7.865 -0.445 7.902 hybrid contribution -0.275 -1.903 -0.962 2.150 sum 0.352 -9.768 -1.407 9.875 Atomic orbital electron populations 1.70778 1.07070 1.31831 1.39178 1.26155 0.95950 1.03083 0.92060 0.83398 0.75097 0.73644 0.77398 1.20726 1.20517 1.20279 1.21622 1.01365 0.89544 1.52929 0.90090 1.21370 0.94159 0.86524 0.86358 0.91478 1.86267 1.36006 1.15388 1.82191 1.19327 0.91521 0.87015 0.93564 1.20287 1.00118 0.90871 1.04871 1.21106 0.93987 0.97575 0.99897 1.18258 0.90582 0.86272 1.04481 1.84872 1.82328 1.27126 1.36510 1.21152 1.00080 0.92415 0.98375 1.21331 0.94191 0.99153 1.05856 1.23322 0.74218 0.72580 0.94783 1.93063 1.50051 1.95142 1.78410 1.93078 1.82996 1.49770 1.93559 1.93185 1.70757 1.55261 1.95951 0.91443 0.84843 0.85167 0.76512 0.85477 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.66 12.34 55.43 0.68 -22.97 15 2 C 0.04 1.01 4.65 -17.82 -0.08 0.93 15 3 Si 1.08 23.58 29.94 -169.99 -5.09 18.49 15 4 H -0.28 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -5.90 7.11 56.52 0.40 -5.49 15 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.62 -16.52 8.50 -34.44 -0.29 -16.81 15 8 H 0.08 2.18 7.88 -52.49 -0.41 1.77 15 9 C 0.17 4.26 1.64 -27.88 -0.05 4.21 15 10 H 0.07 1.65 4.94 -51.93 -0.26 1.39 15 11 O -0.29 -6.60 9.70 -19.67 -0.19 -6.79 15 12 C 0.13 2.62 6.39 -39.24 -0.25 2.37 15 13 C -0.14 -2.37 9.98 -39.45 -0.39 -2.77 15 14 C -0.11 -1.55 9.98 -39.45 -0.39 -1.94 15 15 C 0.05 0.71 6.70 -39.25 -0.26 0.45 15 16 O -0.50 -6.28 13.51 -19.71 -0.27 -6.55 15 17 C -0.10 -1.61 9.98 -39.45 -0.39 -2.01 15 18 C -0.19 -3.47 7.71 -39.45 -0.30 -3.77 15 19 C 0.41 9.79 2.83 37.16 0.11 9.89 15 20 F -0.19 -4.55 16.97 2.25 0.04 -4.51 15 21 F -0.21 -4.67 14.84 2.25 0.03 -4.64 15 22 F -0.17 -4.32 13.79 2.25 0.03 -4.29 15 23 H 0.27 7.48 5.99 -40.82 -0.24 7.24 15 24 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 25 H 0.13 1.51 8.06 -52.49 -0.42 1.08 15 26 H 0.38 2.87 9.06 45.56 0.41 3.28 15 27 H 0.13 1.75 8.06 -52.48 -0.42 1.32 15 28 H 0.13 2.58 5.20 -52.49 -0.27 2.31 15 LS Contribution 258.00 15.07 3.89 3.89 Total: -1.00 -29.38 258.00 -4.03 -33.40 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -0.84 Total: 3.41 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.31 Total: -9.45 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.68 Total: -22.97 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.46 Total: -13.33 kcal Atomic # 9 Polarization: -13.54 SS G_CDS: 0.10 Total: -13.44 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.09 Total: 18.49 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.38 -4.03 -33.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134610.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.613 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds