Wall clock time and date at job start Mon Mar 30 2020 06:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38259 * 120.00243 * 2 1 4 4 C 1.38214 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00194 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00259 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00466 * 179.97438 * 6 5 4 8 8 F 1.39901 * 109.47528 * 221.99195 * 7 6 5 9 9 C 1.50696 * 109.47188 * 341.99031 * 7 6 5 10 10 H 1.08002 * 119.99992 * 6.09936 * 9 7 6 11 11 C 1.37874 * 120.00349 * 186.09362 * 9 7 6 12 12 N 1.31513 * 119.99859 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00308 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47216 * 60.00012 * 13 11 9 15 15 H 1.48497 * 109.47300 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47273 * 300.00501 * 13 11 9 17 17 C 1.53003 * 109.47022 * 101.99185 * 7 6 5 18 18 F 1.39904 * 109.46750 * 180.02562 * 17 7 6 19 19 F 1.39900 * 109.47103 * 299.99750 * 17 7 6 20 20 F 1.39899 * 109.46982 * 60.00192 * 17 7 6 21 21 C 1.38216 * 119.99989 * 180.28036 * 2 1 3 22 22 H 1.09007 * 109.47038 * 90.00092 * 1 2 3 23 23 H 1.09002 * 109.47510 * 210.00227 * 1 2 3 24 24 H 1.09006 * 109.47318 * 330.00248 * 1 2 3 25 25 H 1.07998 * 120.00103 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.00156 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.00185 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00095 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.99927 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 -0.0005 7 6 4.3340 -2.5021 -0.0011 8 9 3.7186 -3.3956 -0.8844 9 6 5.7555 -2.2614 -0.4397 10 1 6.1085 -1.2530 -0.5976 11 6 6.6056 -3.3284 -0.6392 12 7 6.1757 -4.5564 -0.4473 13 14 8.3678 -3.0299 -1.1821 14 1 9.0651 -2.2008 -0.1664 15 1 9.0688 -4.3311 -1.3256 16 1 8.3705 -2.3202 -2.4867 17 6 4.3289 -3.0946 1.4095 18 9 5.0289 -4.3060 1.4091 19 9 4.9445 -2.2012 2.2928 20 9 3.0092 -3.3182 1.8166 21 6 2.1980 -1.1970 -0.0059 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6583 2.1327 0.0004 26 1 4.1205 2.1325 0.0001 27 1 5.3517 -0.0001 0.0005 28 1 6.7737 -5.3071 -0.5880 29 1 1.6580 -2.1323 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138103.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:11 Heat of formation + Delta-G solvation = -165.429343 kcal Electronic energy + Delta-G solvation = -20799.877902 eV Core-core repulsion = 16994.899396 eV Total energy + Delta-G solvation = -3804.978506 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.71366 -46.50004 -46.07435 -45.69520 -38.78849 -33.81982 -32.32530 -31.22641 -28.15574 -26.45987 -24.83316 -22.66481 -21.35723 -19.88162 -17.58049 -17.12657 -16.93728 -16.17588 -15.98463 -14.89867 -14.66852 -14.36469 -13.54559 -13.44004 -13.21436 -13.10607 -12.90616 -12.68802 -12.62450 -12.46282 -12.32126 -12.11526 -11.95145 -11.67521 -11.52012 -11.33160 -11.01585 -10.79477 -10.63333 -10.22403 -9.64936 -9.18931 -8.80694 -8.29444 -8.09950 -6.33460 -4.60540 1.81886 1.91185 3.19021 3.23260 3.25170 4.05620 4.15414 4.34765 4.88069 5.03811 5.21674 5.23720 5.44428 5.60803 5.63073 5.65373 5.81041 5.97073 6.02352 6.09314 6.15359 6.48378 6.54125 6.91010 6.96724 7.00501 7.13737 7.48304 7.54703 7.63324 8.43387 9.15209 10.65320 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.009145 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.000641 B = 3061.179945 C = 3560.505484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.124 4.124 4 C -0.131 4.131 5 C -0.085 4.085 6 C -0.093 4.093 7 C 0.258 3.742 8 F -0.194 7.194 9 C -0.576 4.576 10 H 0.090 0.910 11 C 0.077 3.923 12 N -0.831 5.831 13 Si 0.913 3.087 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.424 3.576 18 F -0.143 7.143 19 F -0.192 7.192 20 F -0.216 7.216 21 C -0.099 4.099 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.141 0.859 28 H 0.272 0.728 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 7.112 1.372 9.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.142 4.142 4 C -0.149 4.149 5 C -0.103 4.103 6 C -0.094 4.094 7 C 0.238 3.762 8 F -0.174 7.174 9 C -0.611 4.611 10 H 0.108 0.892 11 C -0.134 4.134 12 N -0.462 5.462 13 Si 0.738 3.262 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.195 1.195 17 C 0.368 3.632 18 F -0.123 7.123 19 F -0.174 7.174 20 F -0.198 7.198 21 C -0.118 4.118 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.132 0.868 26 H 0.136 0.864 27 H 0.158 0.842 28 H 0.082 0.918 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.388 6.822 1.376 8.801 hybrid contribution 0.839 -0.209 -0.036 0.865 sum -4.550 6.612 1.340 8.138 Atomic orbital electron populations 1.20722 0.91643 1.02268 1.01864 1.19772 0.95673 0.93091 1.01671 1.20924 0.94353 0.96918 1.02032 1.21108 0.94134 0.97824 1.01867 1.21367 1.01315 0.90945 0.96685 1.20315 0.93364 0.95721 0.99977 1.17891 0.94230 0.81637 0.82446 1.92861 1.84541 1.70487 1.69503 1.21258 0.92484 0.95153 1.52236 0.89191 1.25178 1.00066 0.94778 0.93400 1.70204 1.36498 0.98421 1.41081 0.86303 0.82358 0.77971 0.79528 1.19504 1.20735 1.19510 1.22456 0.72122 0.77872 0.90718 1.93329 1.77961 1.44585 1.96475 1.93032 1.83477 1.69079 1.71783 1.93046 1.38853 1.95180 1.92692 1.20987 0.93781 0.97739 0.99243 0.91605 0.91745 0.92026 0.86781 0.86379 0.84176 0.91810 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.01 36.00 0.36 -1.01 15 2 C -0.10 -1.69 5.88 -104.63 -0.62 -2.31 15 3 C -0.12 -1.92 9.70 -39.58 -0.38 -2.30 15 4 C -0.13 -2.16 10.05 -39.58 -0.40 -2.55 15 5 C -0.09 -1.69 9.07 -39.58 -0.36 -2.05 15 6 C -0.09 -2.06 4.60 -104.62 -0.48 -2.55 15 7 C 0.26 6.57 0.69 -92.93 -0.06 6.51 15 8 F -0.19 -5.31 15.51 2.25 0.03 -5.28 15 9 C -0.58 -15.09 7.58 -34.44 -0.26 -15.35 15 10 H 0.09 2.21 5.25 -52.49 -0.28 1.93 15 11 C 0.08 2.04 5.09 -17.82 -0.09 1.95 15 12 N -0.83 -23.13 9.56 55.43 0.53 -22.60 15 13 Si 0.91 20.19 29.54 -169.99 -5.02 15.17 15 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 17 C 0.42 10.79 2.43 37.16 0.09 10.88 15 18 F -0.14 -3.92 13.50 2.25 0.03 -3.89 15 19 F -0.19 -4.71 16.73 2.25 0.04 -4.68 15 20 F -0.22 -5.15 16.09 2.25 0.04 -5.12 15 21 C -0.10 -1.98 8.27 -39.58 -0.33 -2.30 15 22 H 0.07 0.76 8.14 -51.92 -0.42 0.34 15 23 H 0.06 0.79 8.09 -51.93 -0.42 0.37 15 24 H 0.06 0.66 8.09 -51.93 -0.42 0.24 15 25 H 0.11 1.40 8.06 -52.49 -0.42 0.98 15 26 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 27 H 0.14 2.78 5.64 -52.49 -0.30 2.48 15 28 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 29 H 0.12 2.41 7.68 -52.49 -0.40 2.00 15 LS Contribution 262.94 15.07 3.96 3.96 Total: -1.00 -28.80 262.94 -5.14 -33.93 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -2.22 Total: -0.41 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -2.53 Total: -11.09 kcal Atomic # 7 Polarization: -23.13 SS G_CDS: 0.53 Total: -22.60 kcal Atomic # 9 Polarization: -19.10 SS G_CDS: 0.14 Total: -18.96 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.80 -5.14 -33.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138103.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.498 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds