Wall clock time and date at job start Mon Mar 30 2020 06:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38259 * 120.00243 * 2 1 4 4 C 1.38214 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00194 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00259 * 0.02562 * 5 4 3 7 7 C 1.50694 * 120.00466 * 179.97438 * 6 5 4 8 8 F 1.39901 * 109.47528 * 221.99195 * 7 6 5 9 9 C 1.50696 * 109.47188 * 341.99031 * 7 6 5 10 10 H 1.08002 * 119.99992 * 6.09936 * 9 7 6 11 11 C 1.37874 * 120.00349 * 186.09362 * 9 7 6 12 12 N 1.31513 * 119.99859 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00308 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47216 * 60.00012 * 13 11 9 15 15 H 1.48497 * 109.47300 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47273 * 300.00501 * 13 11 9 17 17 C 1.53003 * 109.47022 * 101.99185 * 7 6 5 18 18 F 1.39904 * 109.46750 * 180.02562 * 17 7 6 19 19 F 1.39900 * 109.47103 * 299.99750 * 17 7 6 20 20 F 1.39899 * 109.46982 * 60.00192 * 17 7 6 21 21 C 1.38216 * 119.99989 * 180.28036 * 2 1 3 22 22 H 1.09007 * 109.47038 * 90.00092 * 1 2 3 23 23 H 1.09002 * 109.47510 * 210.00227 * 1 2 3 24 24 H 1.09006 * 109.47318 * 330.00248 * 1 2 3 25 25 H 1.07998 * 120.00103 * 0.02562 * 3 2 1 26 26 H 1.08001 * 120.00156 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.00185 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00095 * 179.97438 * 12 11 9 29 29 H 1.08000 * 119.99927 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0005 6 6 3.5806 -1.1971 -0.0005 7 6 4.3340 -2.5021 -0.0011 8 9 3.7186 -3.3956 -0.8844 9 6 5.7555 -2.2614 -0.4397 10 1 6.1085 -1.2530 -0.5976 11 6 6.6056 -3.3284 -0.6392 12 7 6.1757 -4.5564 -0.4473 13 14 8.3678 -3.0299 -1.1821 14 1 9.0651 -2.2008 -0.1664 15 1 9.0688 -4.3311 -1.3256 16 1 8.3705 -2.3202 -2.4867 17 6 4.3289 -3.0946 1.4095 18 9 5.0289 -4.3060 1.4091 19 9 4.9445 -2.2012 2.2928 20 9 3.0092 -3.3182 1.8166 21 6 2.1980 -1.1970 -0.0059 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 1.6583 2.1327 0.0004 26 1 4.1205 2.1325 0.0001 27 1 5.3517 -0.0001 0.0005 28 1 6.7737 -5.3071 -0.5880 29 1 1.6580 -2.1323 -0.0109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138103.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:10 Heat of formation + Delta-G solvation = -180.193746 kcal Electronic energy + Delta-G solvation = -20800.518134 eV Core-core repulsion = 16994.899396 eV Total energy + Delta-G solvation = -3805.618739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.73580 -48.51910 -48.11459 -47.76511 -40.17371 -35.60640 -33.91050 -32.68486 -29.84807 -27.77419 -26.74627 -24.38364 -22.79307 -21.51280 -19.53896 -19.06339 -18.94781 -18.05326 -17.63859 -16.61777 -16.28722 -15.90289 -15.24240 -15.07262 -15.00838 -14.77827 -14.68042 -14.60014 -14.45355 -14.30395 -14.22808 -14.01918 -13.59026 -13.06103 -12.87910 -12.87236 -12.74262 -12.49312 -12.16897 -11.89103 -11.41352 -11.05938 -10.77657 -9.72830 -9.46653 -8.31962 -6.65676 0.40176 0.53702 1.42159 1.45240 1.53379 2.14986 2.31128 2.79143 2.96443 3.21025 3.49658 3.63296 3.99351 4.06126 4.16118 4.32041 4.53465 4.66116 4.79731 4.88007 4.93854 5.04929 5.11280 5.33743 5.40131 5.52023 5.64298 5.69850 5.90339 6.18183 6.44471 7.13804 8.67451 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.009145 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.000641 B = 3061.179945 C = 3560.505484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.114 4.114 4 C -0.122 4.122 5 C -0.107 4.107 6 C -0.125 4.125 7 C 0.246 3.754 8 F -0.214 7.214 9 C -0.591 4.591 10 H 0.102 0.898 11 C 0.026 3.974 12 N -0.868 5.868 13 Si 0.979 3.021 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.261 1.261 17 C 0.421 3.579 18 F -0.159 7.159 19 F -0.188 7.188 20 F -0.209 7.209 21 C -0.122 4.122 22 H 0.080 0.920 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.159 0.841 26 H 0.155 0.845 27 H 0.131 0.869 28 H 0.271 0.729 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 9.930 1.165 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.139 4.139 5 C -0.124 4.124 6 C -0.126 4.126 7 C 0.227 3.773 8 F -0.194 7.194 9 C -0.626 4.626 10 H 0.119 0.881 11 C -0.182 4.182 12 N -0.500 5.500 13 Si 0.801 3.199 14 H -0.185 1.185 15 H -0.206 1.206 16 H -0.186 1.186 17 C 0.365 3.635 18 F -0.140 7.140 19 F -0.170 7.170 20 F -0.191 7.191 21 C -0.140 4.140 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.108 0.892 25 H 0.177 0.823 26 H 0.173 0.827 27 H 0.149 0.851 28 H 0.081 0.919 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.895 9.653 1.174 11.372 hybrid contribution 0.885 -1.017 0.062 1.350 sum -5.011 8.636 1.237 10.061 Atomic orbital electron populations 1.20807 0.88736 1.03638 1.03182 1.20230 0.97818 0.92222 0.99636 1.21449 0.94127 0.98152 0.99402 1.21507 0.94930 0.97768 0.99716 1.21401 1.01117 0.91631 0.98284 1.20201 0.94296 0.94698 1.03381 1.18119 0.94793 0.82905 0.81531 1.92798 1.84878 1.71532 1.70224 1.21684 0.93168 0.95827 1.51953 0.88080 1.26113 1.04316 0.94445 0.93294 1.70338 1.37909 0.99262 1.42512 0.85284 0.77186 0.77946 0.79472 1.18522 1.20591 1.18581 1.22552 0.72192 0.77385 0.91337 1.93290 1.78424 1.45664 1.96600 1.93020 1.83463 1.68841 1.71662 1.93042 1.38289 1.95135 1.92660 1.21021 0.93125 0.98856 1.01038 0.90176 0.91952 0.89157 0.82297 0.82700 0.85093 0.91931 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 10.01 71.23 0.71 -1.63 15 2 C -0.10 -3.02 5.88 -19.87 -0.12 -3.14 15 3 C -0.11 -3.01 9.70 22.27 0.22 -2.80 15 4 C -0.12 -3.57 10.05 22.27 0.22 -3.35 15 5 C -0.11 -4.13 9.07 22.27 0.20 -3.93 15 6 C -0.13 -5.60 4.60 -19.87 -0.09 -5.69 15 7 C 0.25 12.91 0.69 -12.29 -0.01 12.90 15 8 F -0.21 -12.26 15.51 44.97 0.70 -11.56 15 9 C -0.59 -31.53 7.58 25.60 0.19 -31.34 15 10 H 0.10 5.01 5.25 -2.91 -0.02 4.99 15 11 C 0.03 1.37 5.09 84.65 0.43 1.81 15 12 N -0.87 -49.71 9.56 21.45 0.20 -49.51 15 13 Si 0.98 41.59 29.54 68.60 2.03 43.61 15 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 15 15 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 16 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 17 C 0.42 22.08 2.43 71.98 0.17 22.25 15 18 F -0.16 -9.06 13.50 44.97 0.61 -8.45 15 19 F -0.19 -9.42 16.73 44.97 0.75 -8.67 15 20 F -0.21 -10.31 16.09 44.97 0.72 -9.59 15 21 C -0.12 -4.85 8.27 22.27 0.18 -4.67 15 22 H 0.08 1.56 8.14 -2.38 -0.02 1.54 15 23 H 0.06 1.40 8.09 -2.39 -0.02 1.38 15 24 H 0.09 1.48 8.09 -2.38 -0.02 1.46 15 25 H 0.16 2.84 8.06 -2.91 -0.02 2.82 15 26 H 0.16 3.37 8.06 -2.91 -0.02 3.34 15 27 H 0.13 5.17 5.64 -2.91 -0.02 5.15 15 28 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 29 H 0.11 4.39 7.68 -2.91 -0.02 4.37 15 Total: -1.00 -63.96 262.94 8.33 -55.64 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.19 Total: 8.11 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 2.12 Total: -19.58 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.20 Total: -49.51 kcal Atomic # 9 Polarization: -41.05 SS G_CDS: 2.78 Total: -38.27 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -63.96 8.33 -55.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138103.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.555 kcal (2) G-P(sol) polarization free energy of solvation -63.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds