Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00130 * 2 1 4 4 H 1.48500 * 109.47305 * 240.00176 * 3 2 1 5 5 H 1.48502 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47271 * 120.00138 * 3 2 1 7 7 C 1.37882 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47368 * 184.68586 * 9 7 2 11 11 C 1.38264 * 120.00076 * 266.83821 * 10 9 7 12 12 C 1.38209 * 119.99955 * 180.02562 * 11 10 9 13 13 C 1.38254 * 120.00396 * 359.97438 * 12 11 10 14 14 C 1.38219 * 119.99682 * 0.04322 * 13 12 11 15 15 C 1.38213 * 120.00412 * 86.86561 * 10 9 7 16 16 C 1.50702 * 119.99784 * 359.97438 * 15 10 9 17 17 H 1.09004 * 109.46805 * 328.10715 * 16 15 10 18 18 F 1.39900 * 109.47386 * 208.10633 * 16 15 10 19 19 C 1.53003 * 109.46900 * 88.10471 * 16 15 10 20 20 F 1.39896 * 109.46862 * 65.55287 * 19 16 15 21 21 F 1.39902 * 109.47037 * 185.55051 * 19 16 15 22 22 F 1.39894 * 109.47098 * 305.54907 * 19 16 15 23 23 H 0.97000 * 120.00308 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46913 * 64.68264 * 9 7 2 25 25 H 1.09007 * 109.47251 * 304.68865 * 9 7 2 26 26 H 1.08001 * 119.99560 * 0.02562 * 11 10 9 27 27 H 1.08008 * 119.99531 * 179.70228 * 12 11 10 28 28 H 1.07992 * 120.00402 * 180.02562 * 13 12 11 29 29 H 1.07996 * 119.99742 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2262 -3.6422 0.1149 11 6 2.7076 -4.2582 -1.0256 12 6 3.6015 -5.3069 -0.9196 13 6 4.0149 -5.7398 0.3266 14 6 3.5334 -5.1243 1.4667 15 6 2.6391 -4.0754 1.3608 16 6 2.1144 -3.4041 2.6039 17 1 1.9254 -2.3510 2.3958 18 9 3.0607 -3.5146 3.6283 19 6 0.8120 -4.0801 3.0374 20 9 1.0773 -5.3977 3.4254 21 9 0.2590 -3.3792 4.1145 22 9 -0.0909 -4.0812 1.9689 23 1 -0.4850 0.8400 0.0004 24 1 0.6884 -2.5939 -0.9294 25 1 0.5632 -2.5216 0.8448 26 1 2.3850 -3.9197 -1.9991 27 1 3.9738 -5.7911 -1.8104 28 1 4.7138 -6.5589 0.4094 29 1 3.8560 -5.4627 2.4402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138579.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = -201.294048 kcal Electronic energy + Delta-G solvation = -20374.656159 eV Core-core repulsion = 16568.122443 eV Total energy + Delta-G solvation = -3806.533716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.39479 -49.30921 -48.79187 -48.58570 -40.31131 -35.58884 -33.91492 -32.79790 -29.88935 -28.76484 -25.37627 -24.93204 -22.77811 -21.71629 -19.84629 -19.70192 -19.30375 -18.48910 -17.66148 -17.34475 -16.67661 -16.09042 -15.74644 -15.55446 -15.46233 -15.37310 -15.18491 -15.01959 -14.92385 -14.89402 -14.47745 -14.12788 -13.53826 -13.33703 -13.28694 -12.81242 -12.66600 -12.36889 -12.30256 -11.85342 -11.55403 -11.32962 -10.59353 -9.82379 -9.49397 -8.20849 -6.34289 0.23935 0.56825 1.41958 1.42375 1.43657 1.50825 2.37485 2.39346 2.69143 2.73724 2.94930 3.10957 3.37952 3.70560 3.86183 4.13816 4.25079 4.28810 4.58677 4.74109 4.98966 5.13712 5.28869 5.39828 5.51596 5.60951 5.74467 5.91084 6.06830 6.18510 6.78936 7.34802 8.87650 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.009318 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.064099 B = 3004.332791 C = 3804.920074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.041 3.959 10 C -0.030 4.030 11 C -0.143 4.143 12 C -0.091 4.091 13 C -0.137 4.137 14 C -0.090 4.090 15 C -0.168 4.168 16 C 0.110 3.890 17 H 0.134 0.866 18 F -0.177 7.177 19 C 0.439 3.561 20 F -0.171 7.171 21 F -0.178 7.178 22 F -0.168 7.168 23 H 0.266 0.734 24 H 0.004 0.996 25 H 0.029 0.971 26 H 0.123 0.877 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.009 -10.325 3.079 12.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.004 3.996 10 C -0.031 4.031 11 C -0.161 4.161 12 C -0.108 4.108 13 C -0.155 4.155 14 C -0.108 4.108 15 C -0.168 4.168 16 C 0.073 3.927 17 H 0.151 0.849 18 F -0.158 7.158 19 C 0.385 3.615 20 F -0.152 7.152 21 F -0.160 7.160 22 F -0.150 7.150 23 H 0.075 0.925 24 H 0.023 0.977 25 H 0.047 0.953 26 H 0.141 0.859 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.841 -10.232 3.125 12.189 hybrid contribution -0.298 1.118 0.127 1.164 sum 5.543 -9.114 3.252 11.152 Atomic orbital electron populations 1.70057 1.07498 1.28055 1.50567 1.25811 0.95614 1.02693 0.94540 0.85635 0.78447 0.78673 0.79202 1.19343 1.20792 1.19270 1.21269 0.93064 0.90847 1.51691 0.92586 1.18397 0.93194 0.90591 0.97411 1.20248 0.95730 0.94508 0.92566 1.21227 0.99464 0.97631 0.97805 1.21588 0.95102 0.95046 0.99105 1.21379 1.01424 1.01359 0.91327 1.21162 0.95224 0.93753 1.00655 1.19523 1.04380 1.00869 0.92041 1.21363 0.83085 1.03633 0.84658 0.84876 1.92858 1.65098 1.97579 1.60248 1.20952 0.87632 0.77715 0.75234 1.93180 1.93876 1.36984 1.91190 1.93195 1.87296 1.78763 1.56727 1.93213 1.69753 1.96101 1.55900 0.92496 0.97721 0.95276 0.85867 0.82597 0.82223 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.34 13.29 21.45 0.28 -53.05 15 2 C 0.01 0.70 5.46 84.66 0.46 1.16 15 3 Si 0.96 42.62 29.54 68.60 2.03 44.65 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.53 -28.45 8.45 25.60 0.22 -28.23 15 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 15 9 C 0.04 2.04 4.21 29.10 0.12 2.16 15 10 C -0.03 -1.26 4.79 -19.87 -0.10 -1.35 15 11 C -0.14 -5.05 9.69 22.27 0.22 -4.84 15 12 C -0.09 -2.44 10.05 22.27 0.22 -2.22 15 13 C -0.14 -3.48 10.05 22.27 0.22 -3.26 15 14 C -0.09 -2.74 9.35 22.27 0.21 -2.53 15 15 C -0.17 -6.26 4.68 -19.87 -0.09 -6.35 15 16 C 0.11 4.15 3.01 29.85 0.09 4.24 15 17 H 0.13 5.67 6.34 -2.39 -0.02 5.66 15 18 F -0.18 -6.18 16.09 44.97 0.72 -5.46 15 19 C 0.44 16.05 2.91 71.98 0.21 16.26 15 20 F -0.17 -5.67 17.02 44.97 0.77 -4.91 15 21 F -0.18 -6.46 17.32 44.97 0.78 -5.68 15 22 F -0.17 -6.80 14.24 44.97 0.64 -6.16 15 23 H 0.27 14.58 8.31 -92.71 -0.77 13.81 15 24 H 0.00 0.24 8.06 -2.38 -0.02 0.22 15 25 H 0.03 1.52 4.72 -2.38 -0.01 1.51 15 26 H 0.12 4.25 8.06 -2.91 -0.02 4.22 15 27 H 0.16 2.98 8.06 -2.91 -0.02 2.96 15 28 H 0.16 2.76 8.06 -2.91 -0.02 2.73 15 29 H 0.14 3.68 7.56 -2.91 -0.02 3.65 15 Total: -1.00 -59.47 268.35 8.19 -51.28 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: 1.19 Total: 4.28 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 1.78 Total: -24.95 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 0.28 Total: -53.05 kcal Atomic # 9 Polarization: -25.11 SS G_CDS: 2.91 Total: -22.20 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -59.47 8.19 -51.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138579.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.011 kcal (2) G-P(sol) polarization free energy of solvation -59.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds