Wall clock time and date at job start Mon Mar 30 2020 06:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48508 * 109.47099 * 269.99414 * 3 2 1 5 5 H 1.48497 * 109.47408 * 29.99690 * 3 2 1 6 6 H 1.48503 * 109.47095 * 150.00053 * 3 2 1 7 7 C 1.37878 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46957 * 174.99594 * 9 7 2 11 11 C 1.38257 * 120.00032 * 268.00506 * 10 9 7 12 12 C 1.38218 * 119.99780 * 179.97438 * 11 10 9 13 13 C 1.38252 * 120.00387 * 0.09391 * 12 11 10 14 14 C 1.38221 * 119.99616 * 359.97438 * 13 12 11 15 15 C 1.38214 * 119.99782 * 88.14185 * 10 9 7 16 16 C 1.50692 * 120.00099 * 359.97417 * 15 10 9 17 17 H 1.09005 * 109.47156 * 206.77239 * 16 15 10 18 18 F 1.39904 * 109.47356 * 326.77134 * 16 15 10 19 19 C 1.53003 * 109.47334 * 86.76997 * 16 15 10 20 20 F 1.39898 * 109.46722 * 64.83457 * 19 16 15 21 21 F 1.39896 * 109.47079 * 184.83538 * 19 16 15 22 22 F 1.39895 * 109.46802 * 304.83441 * 19 16 15 23 23 H 0.96999 * 119.99926 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46658 * 54.99955 * 9 7 2 25 25 H 1.08998 * 109.47491 * 295.00139 * 9 7 2 26 26 H 1.07997 * 120.00306 * 0.06417 * 11 10 9 27 27 H 1.08001 * 119.99747 * 180.36772 * 12 11 10 28 28 H 1.08001 * 120.00379 * 179.97438 * 13 12 11 29 29 H 1.07995 * 119.99448 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2255 -3.6420 -0.1218 11 6 2.5501 -4.1420 -1.3693 12 6 3.4443 -5.1898 -1.4826 13 6 4.0127 -5.7392 -0.3484 14 6 3.6872 -5.2403 0.8988 15 6 2.7927 -4.1922 1.0122 16 6 2.4370 -3.6489 2.3720 17 1 3.2612 -3.8292 3.0622 18 9 2.2004 -2.2732 2.2774 19 6 1.1777 -4.3486 2.8874 20 9 1.4475 -5.7067 3.0868 21 9 0.7844 -3.7685 4.0982 22 9 0.1500 -4.2102 1.9484 23 1 -0.4850 0.8400 -0.0004 24 1 0.5584 -2.5196 -0.8399 25 1 0.6935 -2.5961 0.9333 26 1 2.1060 -3.7129 -2.2553 27 1 3.7024 -5.5764 -2.4575 28 1 4.7112 -6.5582 -0.4369 29 1 4.1309 -5.6698 1.7848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261138580.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:59 Heat of formation + Delta-G solvation = -173.815145 kcal Electronic energy + Delta-G solvation = -20591.048137 eV Core-core repulsion = 16785.705995 eV Total energy + Delta-G solvation = -3805.342142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.90508 -47.65231 -47.27828 -46.88409 -38.84505 -33.44921 -32.42932 -31.20504 -28.45918 -26.83632 -23.65031 -23.14107 -21.54108 -20.15469 -18.32846 -18.22776 -17.78530 -16.31895 -16.04759 -15.71401 -15.01815 -14.40650 -14.18477 -14.02557 -13.95668 -13.72575 -13.59695 -13.48661 -13.39896 -13.36047 -12.62286 -12.52282 -11.96925 -11.72177 -11.39466 -11.06225 -10.87956 -10.63678 -10.50606 -9.90537 -9.55846 -9.40737 -8.51348 -8.32180 -7.98098 -5.96460 -3.96736 1.58808 1.93794 2.91497 3.34202 3.40640 3.44575 3.88300 4.11949 4.24332 4.32996 4.51942 4.82953 4.99403 5.25039 5.36220 5.41887 5.49103 5.66442 5.93074 6.10903 6.33190 6.57455 6.80244 6.94155 7.00021 7.43188 7.62503 7.77222 7.97669 8.35600 9.03387 9.63264 11.14219 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.009696 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.107795 B = 2887.061982 C = 3786.245226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.491 4.491 8 H 0.054 0.946 9 C 0.031 3.969 10 C 0.007 3.993 11 C -0.128 4.128 12 C -0.102 4.102 13 C -0.155 4.155 14 C -0.089 4.089 15 C -0.163 4.163 16 C 0.111 3.889 17 H 0.118 0.882 18 F -0.133 7.133 19 C 0.429 3.571 20 F -0.181 7.181 21 F -0.180 7.180 22 F -0.160 7.160 23 H 0.260 0.740 24 H 0.030 0.970 25 H 0.049 0.951 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -10.808 3.405 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.530 4.530 8 H 0.073 0.927 9 C -0.005 4.005 10 C 0.007 3.993 11 C -0.146 4.146 12 C -0.120 4.120 13 C -0.173 4.173 14 C -0.107 4.107 15 C -0.164 4.164 16 C 0.073 3.927 17 H 0.136 0.864 18 F -0.112 7.112 19 C 0.374 3.626 20 F -0.162 7.162 21 F -0.161 7.161 22 F -0.141 7.141 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.142 0.858 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.402 -10.657 3.425 12.430 hybrid contribution 0.256 0.900 0.072 0.938 sum 5.659 -9.758 3.497 11.809 Atomic orbital electron populations 1.69953 1.05937 1.26578 1.50846 1.24921 0.94806 0.98945 0.95509 0.86596 0.79916 0.83563 0.77979 1.20791 1.21241 1.19861 1.20853 0.92652 0.89388 1.50080 0.92734 1.18824 0.92675 0.89323 0.99709 1.20665 0.93800 0.93730 0.91149 1.21139 0.98993 0.96811 0.97660 1.21198 0.96441 0.96222 0.98120 1.20833 1.02373 1.01653 0.92398 1.20778 0.96698 0.95436 0.97792 1.19620 1.03179 1.00425 0.93159 1.21172 0.93377 0.80272 0.97885 0.86440 1.93258 1.94711 1.26353 1.96911 1.21275 0.87739 0.77503 0.76045 1.93155 1.93898 1.34055 1.95103 1.93191 1.92264 1.84171 1.46467 1.93239 1.61504 1.95063 1.64276 0.92988 0.95187 0.93355 0.85750 0.86545 0.86493 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.84 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.73 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 15 7 C -0.49 -13.55 7.06 -34.44 -0.24 -13.79 15 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 15 9 C 0.03 0.79 4.09 -29.03 -0.12 0.67 15 10 C 0.01 0.14 4.76 -104.62 -0.50 -0.36 15 11 C -0.13 -2.40 9.69 -39.58 -0.38 -2.78 15 12 C -0.10 -1.56 10.05 -39.58 -0.40 -1.96 15 13 C -0.15 -2.21 10.05 -39.58 -0.40 -2.61 15 14 C -0.09 -1.36 9.68 -39.58 -0.38 -1.74 15 15 C -0.16 -3.02 4.67 -104.63 -0.49 -3.51 15 16 C 0.11 1.97 3.36 -27.89 -0.09 1.88 15 17 H 0.12 1.59 8.06 -51.93 -0.42 1.17 15 18 F -0.13 -2.97 12.25 2.25 0.03 -2.94 15 19 C 0.43 7.53 2.91 37.16 0.11 7.64 15 20 F -0.18 -2.81 17.13 2.25 0.04 -2.77 15 21 F -0.18 -3.14 17.24 2.25 0.04 -3.10 15 22 F -0.16 -3.25 14.08 2.25 0.03 -3.21 15 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 24 H 0.03 0.82 8.07 -51.93 -0.42 0.40 15 25 H 0.05 1.28 3.99 -51.93 -0.21 1.08 15 26 H 0.12 2.26 8.06 -52.49 -0.42 1.84 15 27 H 0.12 1.44 8.06 -52.49 -0.42 1.01 15 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 15 29 H 0.12 1.43 8.06 -52.49 -0.42 1.00 15 LS Contribution 265.01 15.07 3.99 3.99 Total: -1.00 -30.28 265.01 -5.42 -35.70 By element: Atomic # 1 Polarization: -1.32 SS G_CDS: -2.28 Total: -3.59 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -2.99 Total: -14.98 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 9 Polarization: -12.16 SS G_CDS: 0.14 Total: -12.02 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.28 -5.42 -35.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138580.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.111 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds