Wall clock time and date at job start Mon Mar 30 2020 06:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48508 * 109.47099 * 269.99414 * 3 2 1 5 5 H 1.48497 * 109.47408 * 29.99690 * 3 2 1 6 6 H 1.48503 * 109.47095 * 150.00053 * 3 2 1 7 7 C 1.37878 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00007 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00022 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46957 * 174.99594 * 9 7 2 11 11 C 1.38257 * 120.00032 * 268.00506 * 10 9 7 12 12 C 1.38218 * 119.99780 * 179.97438 * 11 10 9 13 13 C 1.38252 * 120.00387 * 0.09391 * 12 11 10 14 14 C 1.38221 * 119.99616 * 359.97438 * 13 12 11 15 15 C 1.38214 * 119.99782 * 88.14185 * 10 9 7 16 16 C 1.50692 * 120.00099 * 359.97417 * 15 10 9 17 17 H 1.09005 * 109.47156 * 206.77239 * 16 15 10 18 18 F 1.39904 * 109.47356 * 326.77134 * 16 15 10 19 19 C 1.53003 * 109.47334 * 86.76997 * 16 15 10 20 20 F 1.39898 * 109.46722 * 64.83457 * 19 16 15 21 21 F 1.39896 * 109.47079 * 184.83538 * 19 16 15 22 22 F 1.39895 * 109.46802 * 304.83441 * 19 16 15 23 23 H 0.96999 * 119.99926 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.46658 * 54.99955 * 9 7 2 25 25 H 1.08998 * 109.47491 * 295.00139 * 9 7 2 26 26 H 1.07997 * 120.00306 * 0.06417 * 11 10 9 27 27 H 1.08001 * 119.99747 * 180.36772 * 12 11 10 28 28 H 1.08001 * 120.00379 * 179.97438 * 13 12 11 29 29 H 1.07995 * 119.99448 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2255 -3.6420 -0.1218 11 6 2.5501 -4.1420 -1.3693 12 6 3.4443 -5.1898 -1.4826 13 6 4.0127 -5.7392 -0.3484 14 6 3.6872 -5.2403 0.8988 15 6 2.7927 -4.1922 1.0122 16 6 2.4370 -3.6489 2.3720 17 1 3.2612 -3.8292 3.0622 18 9 2.2004 -2.2732 2.2774 19 6 1.1777 -4.3486 2.8874 20 9 1.4475 -5.7067 3.0868 21 9 0.7844 -3.7685 4.0982 22 9 0.1500 -4.2102 1.9484 23 1 -0.4850 0.8400 -0.0004 24 1 0.5584 -2.5196 -0.8399 25 1 0.6935 -2.5961 0.9333 26 1 2.1060 -3.7129 -2.2553 27 1 3.7024 -5.5764 -2.4575 28 1 4.7112 -6.5582 -0.4369 29 1 4.1309 -5.6698 1.7848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261138580.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:58 Heat of formation + Delta-G solvation = -190.507960 kcal Electronic energy + Delta-G solvation = -20591.771991 eV Core-core repulsion = 16785.705995 eV Total energy + Delta-G solvation = -3806.065997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.31652 -49.09022 -48.73227 -48.37508 -40.18179 -35.38409 -33.80736 -32.89371 -29.88784 -28.56358 -25.35693 -24.67586 -22.93362 -21.61162 -19.73395 -19.61531 -19.22870 -18.39905 -17.47825 -17.14511 -16.60185 -16.09337 -15.55875 -15.47136 -15.41174 -15.11798 -15.04051 -14.89360 -14.84302 -14.83184 -14.42246 -14.04494 -13.55344 -13.30978 -13.00051 -12.75182 -12.68632 -12.27631 -12.10134 -11.57915 -11.46429 -11.27315 -10.49072 -9.78764 -9.44088 -8.11501 -6.18550 0.28957 0.61489 1.39589 1.40870 1.51614 1.54469 2.43923 2.51265 2.76984 2.89387 3.01305 3.21324 3.49364 3.71836 3.98095 4.20695 4.30125 4.32816 4.62430 4.79830 5.03469 5.20460 5.33309 5.49816 5.53876 5.65167 5.83195 5.99847 6.13973 6.27218 6.89234 7.44885 8.99138 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.018723 B = 0.009696 C = 0.007393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.107795 B = 2887.061982 C = 3786.245226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.492 4.492 8 H 0.050 0.950 9 C 0.042 3.958 10 C -0.035 4.035 11 C -0.150 4.150 12 C -0.094 4.094 13 C -0.139 4.139 14 C -0.082 4.082 15 C -0.174 4.174 16 C 0.102 3.898 17 H 0.167 0.833 18 F -0.166 7.166 19 C 0.432 3.568 20 F -0.164 7.164 21 F -0.181 7.181 22 F -0.182 7.182 23 H 0.261 0.739 24 H -0.010 1.010 25 H 0.032 0.968 26 H 0.111 0.889 27 H 0.151 0.849 28 H 0.163 0.837 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -12.624 3.833 15.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.195 4.195 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.530 4.530 8 H 0.068 0.932 9 C 0.005 3.995 10 C -0.035 4.035 11 C -0.168 4.168 12 C -0.112 4.112 13 C -0.157 4.157 14 C -0.100 4.100 15 C -0.175 4.175 16 C 0.065 3.935 17 H 0.184 0.816 18 F -0.146 7.146 19 C 0.377 3.623 20 F -0.146 7.146 21 F -0.162 7.162 22 F -0.164 7.164 23 H 0.069 0.931 24 H 0.008 0.992 25 H 0.050 0.950 26 H 0.129 0.871 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.275 -12.486 3.850 15.466 hybrid contribution -0.588 1.300 -0.062 1.428 sum 7.687 -11.186 3.788 14.091 Atomic orbital electron populations 1.70092 1.07571 1.27334 1.52577 1.25780 0.95602 1.02630 0.95471 0.85590 0.78775 0.79269 0.78320 1.19903 1.20995 1.18989 1.21122 0.92459 0.90718 1.48682 0.93184 1.18507 0.92980 0.91008 0.97013 1.20362 0.95247 0.94276 0.93592 1.21178 1.00669 0.98603 0.96387 1.21557 0.94649 0.94443 1.00550 1.21415 1.01422 1.01555 0.91295 1.21251 0.95001 0.93721 1.00038 1.19759 1.03958 1.01532 0.92216 1.21639 0.94590 0.78241 0.99069 0.81570 1.93165 1.95046 1.29255 1.97135 1.21282 0.87220 0.78207 0.75558 1.93178 1.93692 1.32731 1.94965 1.93185 1.92302 1.84333 1.46402 1.93196 1.62645 1.95261 1.65283 0.93061 0.99175 0.94981 0.87060 0.83131 0.81916 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.74 15 2 C 0.00 0.12 5.46 84.66 0.46 0.58 15 3 Si 0.96 45.53 29.54 68.60 2.03 47.56 15 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 5 H -0.28 -13.33 7.11 99.48 0.71 -12.62 15 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 7 C -0.49 -28.11 7.06 25.60 0.18 -27.93 15 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 15 9 C 0.04 2.24 4.09 29.10 0.12 2.36 15 10 C -0.03 -1.49 4.76 -19.87 -0.09 -1.59 15 11 C -0.15 -5.62 9.69 22.27 0.22 -5.41 15 12 C -0.09 -2.58 10.05 22.27 0.22 -2.36 15 13 C -0.14 -3.25 10.05 22.27 0.22 -3.03 15 14 C -0.08 -2.14 9.68 22.27 0.22 -1.92 15 15 C -0.17 -6.16 4.67 -19.87 -0.09 -6.25 15 16 C 0.10 3.49 3.36 29.85 0.10 3.59 15 17 H 0.17 3.93 8.06 -2.38 -0.02 3.91 15 18 F -0.17 -7.55 12.25 44.97 0.55 -7.00 15 19 C 0.43 14.88 2.91 71.98 0.21 15.08 15 20 F -0.16 -4.73 17.13 44.97 0.77 -3.96 15 21 F -0.18 -6.24 17.24 44.97 0.78 -5.47 15 22 F -0.18 -7.68 14.08 44.97 0.63 -7.05 15 23 H 0.26 15.30 8.31 -92.71 -0.77 14.53 15 24 H -0.01 -0.60 8.07 -2.38 -0.02 -0.62 15 25 H 0.03 1.81 3.99 -2.39 -0.01 1.80 15 26 H 0.11 4.26 8.06 -2.91 -0.02 4.24 15 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 15 28 H 0.16 2.41 8.06 -2.91 -0.02 2.39 15 29 H 0.16 2.81 8.06 -2.91 -0.02 2.79 15 Total: -1.00 -69.60 265.01 7.99 -61.61 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: 1.19 Total: -1.07 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 1.76 Total: -26.88 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.28 Total: -57.74 kcal Atomic # 9 Polarization: -26.20 SS G_CDS: 2.73 Total: -23.47 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.60 7.99 -61.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261138580.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.899 kcal (2) G-P(sol) polarization free energy of solvation -69.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds