Wall clock time and date at job start Mon Mar 30 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99762 * 2 1 4 4 C 1.38213 * 120.00046 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99824 * 359.97438 * 5 4 3 7 7 C 1.38219 * 120.00249 * 180.02562 * 2 1 3 8 8 C 1.50700 * 119.99696 * 0.27938 * 7 2 1 9 9 F 1.39907 * 109.47191 * 59.20406 * 8 7 2 10 10 C 1.50697 * 109.47280 * 299.20498 * 8 7 2 11 11 H 1.08005 * 119.99725 * 359.97438 * 10 8 7 12 12 C 1.37880 * 120.00338 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99572 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00110 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47231 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47154 * 120.00220 * 14 12 10 17 17 H 1.48502 * 109.46992 * 240.00261 * 14 12 10 18 18 C 1.52998 * 109.46989 * 179.20371 * 8 7 2 19 19 F 1.39906 * 109.46932 * 66.57085 * 18 8 7 20 20 F 1.39902 * 109.47044 * 186.57046 * 18 8 7 21 21 F 1.39905 * 109.47110 * 306.57408 * 18 8 7 22 22 H 1.09006 * 109.47354 * 274.78084 * 1 2 3 23 23 H 1.08997 * 109.47348 * 34.78426 * 1 2 3 24 24 H 1.09006 * 109.47291 * 154.78829 * 1 2 3 25 25 H 1.08001 * 119.99963 * 0.06661 * 3 2 1 26 26 H 1.07993 * 120.00296 * 180.02562 * 4 3 2 27 27 H 1.07999 * 119.99935 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.99813 * 179.97438 * 6 5 4 29 29 H 0.96997 * 119.99619 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0075 9 9 0.6314 -2.5650 -1.1442 10 6 0.5879 -2.5941 1.2288 11 1 0.5892 -1.7882 1.9479 12 6 -0.1969 -3.7074 1.4425 13 7 -0.1974 -4.6893 0.5676 14 14 -1.2584 -3.8217 2.9753 15 1 -1.0784 -2.5963 3.7946 16 1 -2.6845 -3.9494 2.5815 17 1 -0.8556 -5.0106 3.7688 18 6 2.4388 -3.6648 -0.0267 19 9 3.1499 -3.6903 1.1779 20 9 1.7447 -4.8693 -0.1840 21 9 3.3310 -3.4981 -1.0914 22 1 -0.3634 0.0857 1.0241 23 1 -0.3634 0.8440 -0.5862 24 1 -0.3634 -0.9298 -0.4378 25 1 1.6582 2.1327 0.0011 26 1 4.1203 2.1327 0.0010 27 1 5.3517 0.0001 0.0005 28 1 4.1207 -2.1322 0.0001 29 1 -0.7492 -5.4727 0.7181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261147167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:16 Heat of formation + Delta-G solvation = -155.077688 kcal Electronic energy + Delta-G solvation = -21234.341767 eV Core-core repulsion = 17429.812142 eV Total energy + Delta-G solvation = -3804.529625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.87023 -46.54444 -46.19957 -45.72257 -38.74654 -33.61472 -32.13169 -31.47006 -28.04169 -26.27518 -24.66027 -22.78594 -21.10727 -20.08049 -17.68435 -17.28002 -16.91200 -16.24249 -15.54912 -15.12025 -14.56746 -14.31547 -13.68059 -13.37506 -13.20977 -13.07503 -13.00718 -12.71572 -12.67916 -12.35699 -12.22346 -12.06711 -11.69099 -11.48301 -11.27561 -11.05932 -10.98892 -10.70069 -10.50527 -10.39533 -9.53990 -9.20939 -8.82018 -8.29404 -8.01912 -6.29019 -4.59909 1.86980 1.92677 3.15614 3.23594 3.28130 4.08518 4.14342 4.30897 4.82128 5.04329 5.29843 5.41944 5.45060 5.53569 5.60024 5.81569 5.95473 6.10951 6.24388 6.42863 6.50142 6.54770 6.78426 6.94516 6.96218 7.13459 7.32438 7.40453 7.56423 7.57104 8.46807 9.14060 10.62313 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.011186 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.200281 B = 2502.576697 C = 3147.875541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.045 4.045 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.090 4.090 8 C 0.257 3.743 9 F -0.195 7.195 10 C -0.558 4.558 11 H 0.085 0.915 12 C 0.072 3.928 13 N -0.833 5.833 14 Si 0.913 3.087 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.421 3.579 19 F -0.189 7.189 20 F -0.133 7.133 21 F -0.216 7.216 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.837 6.381 -0.396 7.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.045 4.045 3 C -0.152 4.152 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.133 4.133 7 C -0.091 4.091 8 C 0.238 3.762 9 F -0.175 7.175 10 C -0.594 4.594 11 H 0.103 0.897 12 C -0.138 4.138 13 N -0.465 5.465 14 Si 0.739 3.261 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.204 1.204 18 C 0.366 3.634 19 F -0.170 7.170 20 F -0.114 7.114 21 F -0.198 7.198 22 H 0.089 0.911 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.741 6.134 -0.493 7.202 hybrid contribution -0.213 -0.411 0.693 0.834 sum 3.528 5.723 0.201 6.726 Atomic orbital electron populations 1.21021 0.90624 1.03713 1.02298 1.19691 0.96739 0.91618 0.96466 1.20941 0.94122 0.97170 1.02959 1.21010 0.94319 0.97517 1.01314 1.20967 0.99279 0.92430 1.02566 1.21560 0.93899 0.99116 0.98705 1.20135 0.93500 0.95166 1.00275 1.18006 0.86834 0.85482 0.85924 1.92829 1.74485 1.96478 1.53750 1.21115 1.26788 1.06516 1.04979 0.89664 1.25206 0.96417 0.94671 0.97484 1.70374 1.35378 1.06770 1.33978 0.86185 0.79661 0.78646 0.81656 1.19131 1.20350 1.20427 1.22349 0.80692 0.88368 0.72026 1.93038 1.79879 1.96979 1.47150 1.93394 1.76554 1.46615 1.94794 1.93016 1.71941 1.95728 1.59088 0.91097 0.93309 0.88498 0.86492 0.86756 0.86596 0.85352 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.47 36.01 0.31 -1.97 15 2 C -0.05 -0.90 5.68 -104.62 -0.59 -1.49 15 3 C -0.13 -2.24 9.72 -39.58 -0.38 -2.63 15 4 C -0.12 -1.93 10.05 -39.58 -0.40 -2.33 15 5 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 15 6 C -0.11 -2.33 8.15 -39.59 -0.32 -2.65 15 7 C -0.09 -2.01 4.88 -104.62 -0.51 -2.52 15 8 C 0.26 6.45 0.41 -92.93 -0.04 6.41 15 9 F -0.20 -5.17 14.28 2.25 0.03 -5.14 15 10 C -0.56 -14.39 6.08 -34.44 -0.21 -14.60 15 11 H 0.09 2.16 7.14 -52.48 -0.37 1.79 15 12 C 0.07 1.88 5.24 -17.82 -0.09 1.79 15 13 N -0.83 -22.73 9.27 55.43 0.51 -22.21 15 14 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 15 15 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 18 C 0.42 10.58 2.08 37.16 0.08 10.65 15 19 F -0.19 -4.61 15.34 2.25 0.03 -4.57 15 20 F -0.13 -3.61 13.16 2.25 0.03 -3.58 15 21 F -0.22 -5.03 14.58 2.25 0.03 -5.00 15 22 H 0.07 1.30 7.88 -51.93 -0.41 0.89 15 23 H 0.05 0.77 8.12 -51.93 -0.42 0.35 15 24 H 0.10 2.11 5.02 -51.93 -0.26 1.85 15 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 15 26 H 0.11 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.13 2.64 4.62 -52.49 -0.24 2.40 15 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 LS Contribution 253.57 15.07 3.82 3.82 Total: -1.00 -27.87 253.57 -5.23 -33.10 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -2.11 Total: 0.47 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.57 Total: -11.99 kcal Atomic # 7 Polarization: -22.73 SS G_CDS: 0.51 Total: -22.21 kcal Atomic # 9 Polarization: -18.43 SS G_CDS: 0.13 Total: -18.30 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.87 -5.23 -33.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.976 kcal (2) G-P(sol) polarization free energy of solvation -27.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds