Wall clock time and date at job start Mon Mar 30 2020 06:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99762 * 2 1 4 4 C 1.38213 * 120.00046 * 179.97438 * 3 2 1 5 5 C 1.38263 * 119.99899 * 0.02562 * 4 3 2 6 6 C 1.38216 * 119.99824 * 359.97438 * 5 4 3 7 7 C 1.38219 * 120.00249 * 180.02562 * 2 1 3 8 8 C 1.50700 * 119.99696 * 0.27938 * 7 2 1 9 9 F 1.39907 * 109.47191 * 59.20406 * 8 7 2 10 10 C 1.50697 * 109.47280 * 299.20498 * 8 7 2 11 11 H 1.08005 * 119.99725 * 359.97438 * 10 8 7 12 12 C 1.37880 * 120.00338 * 180.02562 * 10 8 7 13 13 N 1.31516 * 119.99572 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00110 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47231 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47154 * 120.00220 * 14 12 10 17 17 H 1.48502 * 109.46992 * 240.00261 * 14 12 10 18 18 C 1.52998 * 109.46989 * 179.20371 * 8 7 2 19 19 F 1.39906 * 109.46932 * 66.57085 * 18 8 7 20 20 F 1.39902 * 109.47044 * 186.57046 * 18 8 7 21 21 F 1.39905 * 109.47110 * 306.57408 * 18 8 7 22 22 H 1.09006 * 109.47354 * 274.78084 * 1 2 3 23 23 H 1.08997 * 109.47348 * 34.78426 * 1 2 3 24 24 H 1.09006 * 109.47291 * 154.78829 * 1 2 3 25 25 H 1.08001 * 119.99963 * 0.06661 * 3 2 1 26 26 H 1.07993 * 120.00296 * 180.02562 * 4 3 2 27 27 H 1.07999 * 119.99935 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.99813 * 179.97438 * 6 5 4 29 29 H 0.96997 * 119.99619 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0005 7 6 2.1981 -1.1970 -0.0005 8 6 1.4446 -2.5021 -0.0075 9 9 0.6314 -2.5650 -1.1442 10 6 0.5879 -2.5941 1.2288 11 1 0.5892 -1.7882 1.9479 12 6 -0.1969 -3.7074 1.4425 13 7 -0.1974 -4.6893 0.5676 14 14 -1.2584 -3.8217 2.9753 15 1 -1.0784 -2.5963 3.7946 16 1 -2.6845 -3.9494 2.5815 17 1 -0.8556 -5.0106 3.7688 18 6 2.4388 -3.6648 -0.0267 19 9 3.1499 -3.6903 1.1779 20 9 1.7447 -4.8693 -0.1840 21 9 3.3310 -3.4981 -1.0914 22 1 -0.3634 0.0857 1.0241 23 1 -0.3634 0.8440 -0.5862 24 1 -0.3634 -0.9298 -0.4378 25 1 1.6582 2.1327 0.0011 26 1 4.1203 2.1327 0.0010 27 1 5.3517 0.0001 0.0005 28 1 4.1207 -2.1322 0.0001 29 1 -0.7492 -5.4727 0.7181 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147167.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:16 Heat of formation + Delta-G solvation = -169.131597 kcal Electronic energy + Delta-G solvation = -21234.951190 eV Core-core repulsion = 17429.812142 eV Total energy + Delta-G solvation = -3805.139048 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.84647 -48.52207 -48.18138 -47.75587 -40.16129 -35.46035 -33.65409 -33.06878 -29.71603 -27.80851 -26.56681 -24.44151 -22.65922 -21.66553 -19.65216 -19.13919 -18.82972 -18.13109 -17.24924 -16.70774 -16.28965 -15.87010 -15.54092 -15.13380 -14.97971 -14.91095 -14.74934 -14.66016 -14.42614 -14.20357 -14.10520 -13.68954 -13.58757 -12.97007 -12.82496 -12.75768 -12.60013 -12.56772 -12.23111 -11.83391 -11.25383 -11.12307 -10.77084 -9.71311 -9.44097 -8.25282 -6.62002 0.45840 0.54095 1.40639 1.42286 1.55415 2.14380 2.31140 2.83545 2.90798 3.23127 3.53847 3.58863 3.93653 4.11902 4.20237 4.26671 4.54983 4.69008 4.85927 4.97694 5.02255 5.06525 5.14434 5.47998 5.52311 5.55902 5.61620 5.63770 5.88572 6.19362 6.46753 7.14626 8.66593 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.021630 B = 0.011186 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.200281 B = 2502.576697 C = 3147.875541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 C -0.127 4.127 4 C -0.110 4.110 5 C -0.131 4.131 6 C -0.137 4.137 7 C -0.126 4.126 8 C 0.249 3.751 9 F -0.212 7.212 10 C -0.562 4.562 11 H 0.084 0.916 12 C 0.025 3.975 13 N -0.867 5.867 14 Si 0.974 3.026 15 H -0.258 1.258 16 H -0.272 1.272 17 H -0.278 1.278 18 C 0.418 3.582 19 F -0.187 7.187 20 F -0.149 7.149 21 F -0.208 7.208 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.153 0.847 26 H 0.161 0.839 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 8.990 0.328 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.126 4.126 8 C 0.229 3.771 9 F -0.192 7.192 10 C -0.598 4.598 11 H 0.102 0.898 12 C -0.182 4.182 13 N -0.500 5.500 14 Si 0.797 3.203 15 H -0.182 1.182 16 H -0.197 1.197 17 H -0.204 1.204 18 C 0.363 3.637 19 F -0.169 7.169 20 F -0.130 7.130 21 F -0.190 7.190 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.170 0.830 26 H 0.178 0.822 27 H 0.166 0.834 28 H 0.132 0.868 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.416 8.754 0.228 9.807 hybrid contribution -0.330 -1.146 0.422 1.265 sum 4.085 7.607 0.650 8.659 Atomic orbital electron populations 1.20921 0.90639 1.03108 1.02467 1.19917 0.97110 0.92160 0.97483 1.21347 0.94961 0.97129 1.01055 1.21538 0.94048 0.98774 0.98356 1.21359 1.00974 0.91598 1.00918 1.21581 0.93322 1.00246 1.00399 1.20079 0.94356 0.94461 1.03710 1.18168 0.86824 0.87000 0.85083 1.92779 1.75142 1.96707 1.54586 1.21285 1.26941 1.06374 1.05208 0.89804 1.26036 0.97567 0.94328 1.00261 1.70490 1.36418 1.07338 1.35767 0.85243 0.78082 0.78731 0.78204 1.18194 1.19735 1.20368 1.22441 0.81014 0.88004 0.72251 1.93024 1.79825 1.96961 1.47092 1.93355 1.77057 1.47690 1.94923 1.93018 1.71610 1.95667 1.58679 0.91130 0.90220 0.92083 0.82969 0.82162 0.83385 0.86755 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.26 8.47 71.24 0.60 -3.66 15 2 C -0.07 -2.56 5.68 -19.86 -0.11 -2.67 15 3 C -0.13 -3.75 9.72 22.27 0.22 -3.54 15 4 C -0.11 -2.88 10.05 22.27 0.22 -2.66 15 5 C -0.13 -3.99 10.05 22.27 0.22 -3.76 15 6 C -0.14 -5.47 8.15 22.27 0.18 -5.29 15 7 C -0.13 -5.58 4.88 -19.87 -0.10 -5.67 15 8 C 0.25 12.78 0.41 -12.29 -0.01 12.77 15 9 F -0.21 -11.68 14.28 44.97 0.64 -11.04 15 10 C -0.56 -29.52 6.08 25.60 0.16 -29.37 15 11 H 0.08 4.31 7.14 -2.91 -0.02 4.29 15 12 C 0.02 1.30 5.24 84.66 0.44 1.74 15 13 N -0.87 -48.65 9.27 21.45 0.20 -48.45 15 14 Si 0.97 41.57 29.54 68.60 2.03 43.60 15 15 H -0.26 -10.52 7.11 99.48 0.71 -9.82 15 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 15 17 H -0.28 -11.75 7.11 99.48 0.71 -11.05 15 18 C 0.42 21.63 2.08 71.98 0.15 21.78 15 19 F -0.19 -9.37 15.34 44.97 0.69 -8.68 15 20 F -0.15 -8.42 13.16 44.97 0.59 -7.83 15 21 F -0.21 -9.96 14.58 44.97 0.66 -9.31 15 22 H 0.07 2.54 7.88 -2.38 -0.02 2.52 15 23 H 0.08 2.36 8.12 -2.39 -0.02 2.34 15 24 H 0.06 2.71 5.02 -2.38 -0.01 2.69 15 25 H 0.15 3.38 8.06 -2.91 -0.02 3.35 15 26 H 0.16 2.81 8.06 -2.91 -0.02 2.78 15 27 H 0.15 3.48 8.06 -2.91 -0.02 3.46 15 28 H 0.11 4.74 4.62 -2.91 -0.01 4.73 15 29 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 Total: -1.00 -61.73 253.57 7.98 -53.74 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.20 Total: 8.28 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 1.98 Total: -20.32 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.20 Total: -48.45 kcal Atomic # 9 Polarization: -39.43 SS G_CDS: 2.58 Total: -36.85 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -61.73 7.98 -53.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147167.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.390 kcal (2) G-P(sol) polarization free energy of solvation -61.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds