Wall clock time and date at job start Mon Mar 30 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99689 * 2 1 4 4 H 1.48497 * 109.47158 * 240.00331 * 3 2 1 5 5 H 1.48501 * 109.46814 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47161 * 120.00147 * 3 2 1 7 7 C 1.37875 * 120.00796 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00577 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99754 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46599 * 59.99690 * 9 7 2 11 11 O 1.42893 * 109.47181 * 179.97438 * 9 7 2 12 12 C 1.35900 * 117.00047 * 211.64916 * 11 9 7 13 13 C 1.38787 * 120.02793 * 354.54764 * 12 11 9 14 14 C 1.38158 * 120.05636 * 179.97438 * 13 12 11 15 15 C 1.38194 * 120.10785 * 359.97438 * 14 13 12 16 16 C 1.38752 * 120.05480 * 0.04864 * 15 14 13 17 17 O 1.35896 * 120.02723 * 179.97438 * 16 15 14 18 18 C 1.38614 * 120.02898 * 174.26951 * 12 11 9 19 19 C 1.53000 * 109.47189 * 300.00027 * 9 7 2 20 20 F 1.39899 * 109.46768 * 300.00044 * 19 9 7 21 21 F 1.39903 * 109.47087 * 59.99779 * 19 9 7 22 22 F 1.39902 * 109.47220 * 179.97438 * 19 9 7 23 23 H 0.96991 * 120.00648 * 359.97438 * 1 2 3 24 24 H 1.08003 * 119.97506 * 359.97148 * 13 12 11 25 25 H 1.07996 * 119.94432 * 180.02562 * 14 13 12 26 26 H 1.08004 * 119.97135 * 180.02562 * 15 14 13 27 27 H 0.96699 * 114.00337 * 89.99649 * 17 16 15 28 28 H 1.08000 * 120.05292 * 0.02562 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5566 -0.8903 11 8 2.1799 -3.5852 -0.0017 12 6 1.7970 -4.7237 -0.6373 13 6 0.5116 -4.8348 -1.1488 14 6 0.1218 -5.9918 -1.7955 15 6 1.0105 -7.0409 -1.9353 16 6 2.2965 -6.9348 -1.4252 17 8 3.1697 -7.9670 -1.5624 18 6 2.6916 -5.7728 -0.7803 19 6 0.3721 -2.5806 1.2490 20 9 1.1769 -2.5066 2.3909 21 9 -0.5371 -1.5173 1.2496 22 9 -0.3277 -3.7920 1.2487 23 1 -0.4850 0.8399 0.0004 24 1 -0.1846 -4.0162 -1.0412 25 1 -0.8787 -6.0762 -2.1932 26 1 0.7036 -7.9442 -2.4416 27 1 3.6995 -7.9293 -2.3705 28 1 3.6936 -5.6866 -0.3866 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148524.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:47 Heat of formation + Delta-G solvation = -207.043434 kcal Electronic energy + Delta-G solvation = -20321.721818 eV Core-core repulsion = 16502.566000 eV Total energy + Delta-G solvation = -3819.155818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.58371 -48.22742 -47.87155 -41.19827 -39.41332 -36.99668 -35.25101 -32.05245 -30.56030 -30.06961 -26.75491 -24.49089 -23.66449 -22.54066 -20.11157 -19.39626 -18.92120 -18.80586 -18.06391 -17.76131 -17.03942 -16.88759 -16.33329 -15.82048 -15.26246 -15.09944 -15.03997 -14.67590 -14.58668 -14.50877 -14.38946 -14.14490 -13.89766 -13.11968 -12.96515 -12.91186 -12.70940 -12.65928 -12.12643 -11.93024 -11.57047 -11.33256 -10.71600 -9.79234 -9.18189 -8.33697 -6.62769 0.23983 0.41795 1.42258 1.45465 1.53775 2.05895 2.28719 2.41248 2.67773 2.81264 3.35216 3.51009 3.64162 3.88677 4.01143 4.10914 4.23588 4.37577 4.58180 4.60824 4.96561 5.29087 5.39231 5.43585 5.49742 5.55603 5.69879 6.31313 6.57657 6.87015 7.08117 8.59345 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.028794 B = 0.006809 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.204922 B = 4111.445891 C = 4467.931494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.022 3.978 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.563 4.563 8 H 0.077 0.923 9 C 0.192 3.808 10 H 0.068 0.932 11 O -0.315 6.315 12 C 0.119 3.881 13 C -0.226 4.226 14 C -0.060 4.060 15 C -0.180 4.180 16 C 0.146 3.854 17 O -0.500 6.500 18 C -0.198 4.198 19 C 0.408 3.592 20 F -0.204 7.204 21 F -0.141 7.141 22 F -0.213 7.213 23 H 0.275 0.725 24 H 0.117 0.883 25 H 0.158 0.842 26 H 0.161 0.839 27 H 0.414 0.586 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 -8.988 -5.246 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.599 4.599 8 H 0.095 0.905 9 C 0.134 3.866 10 H 0.085 0.915 11 O -0.229 6.229 12 C 0.074 3.926 13 C -0.245 4.245 14 C -0.078 4.078 15 C -0.199 4.199 16 C 0.101 3.899 17 O -0.314 6.314 18 C -0.217 4.217 19 C 0.353 3.647 20 F -0.186 7.186 21 F -0.123 7.123 22 F -0.195 7.195 23 H 0.085 0.915 24 H 0.135 0.865 25 H 0.175 0.825 26 H 0.178 0.822 27 H 0.274 0.726 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.954 -9.003 -4.597 10.154 hybrid contribution 0.071 1.099 0.164 1.113 sum 1.025 -7.904 -4.433 9.120 Atomic orbital electron populations 1.70424 1.07050 1.28837 1.44004 1.25918 0.96125 1.03232 0.93100 0.85175 0.78187 0.76430 0.79414 1.18467 1.19758 1.19606 1.20979 0.94639 0.87957 1.56299 0.90454 1.21119 0.88849 0.85832 0.90800 0.91465 1.86143 1.44383 1.21353 1.71012 1.19365 0.93677 0.86988 0.92583 1.21519 0.95725 1.01595 1.05687 1.21117 1.00563 0.90902 0.95170 1.21556 0.93308 1.00795 1.04226 1.18069 0.90291 0.85527 0.96031 1.84740 1.54481 1.43454 1.48720 1.20748 1.00607 0.92608 1.07771 1.23373 0.80617 0.72846 0.87893 1.93005 1.74352 1.96109 1.55131 1.93406 1.68466 1.54121 1.96274 1.93060 1.81430 1.48079 1.96953 0.91518 0.86507 0.82471 0.82190 0.72590 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.65 9.50 21.45 0.20 -46.44 15 2 C 0.02 1.13 5.20 84.65 0.44 1.57 15 3 Si 0.99 41.09 29.54 68.60 2.03 43.12 15 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 15 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 7 C -0.56 -30.46 8.62 25.60 0.22 -30.24 15 8 H 0.08 4.17 7.81 -2.91 -0.02 4.15 15 9 C 0.19 9.84 1.96 29.85 0.06 9.90 15 10 H 0.07 3.50 5.87 -2.38 -0.01 3.49 15 11 O -0.32 -15.29 9.69 -92.42 -0.90 -16.19 15 12 C 0.12 4.91 6.39 22.49 0.14 5.06 15 13 C -0.23 -8.50 7.71 22.38 0.17 -8.33 15 14 C -0.06 -1.70 10.04 22.24 0.22 -1.48 15 15 C -0.18 -4.56 9.98 22.38 0.22 -4.34 15 16 C 0.15 4.10 6.70 22.49 0.15 4.25 15 17 O -0.50 -11.16 13.50 -92.38 -1.25 -12.41 15 18 C -0.20 -6.89 9.93 22.46 0.22 -6.66 15 19 C 0.41 21.06 2.82 71.98 0.20 21.26 15 20 F -0.20 -10.77 16.97 44.97 0.76 -10.01 15 21 F -0.14 -7.68 12.91 44.97 0.58 -7.10 15 22 F -0.21 -10.16 14.82 44.97 0.67 -9.49 15 23 H 0.27 13.84 8.31 -92.72 -0.77 13.07 15 24 H 0.12 4.77 5.19 -2.91 -0.02 4.75 15 25 H 0.16 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.16 2.91 8.06 -2.91 -0.02 2.89 15 27 H 0.41 4.70 9.06 -74.06 -0.67 4.03 15 28 H 0.13 4.47 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -62.41 258.02 4.71 -57.70 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.56 Total: 9.83 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 2.06 Total: -9.01 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.20 Total: -46.44 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -2.14 Total: -28.60 kcal Atomic # 9 Polarization: -28.61 SS G_CDS: 2.01 Total: -26.60 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -62.41 4.71 -57.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148524.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.344 kcal (2) G-P(sol) polarization free energy of solvation -62.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds