Wall clock time and date at job start Mon Mar 30 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48496 * 109.47247 * 266.10853 * 3 2 1 5 5 H 1.48496 * 109.46971 * 26.10697 * 3 2 1 6 6 H 1.48502 * 109.47278 * 146.10563 * 3 2 1 7 7 C 1.37875 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99778 * 353.78406 * 7 2 1 9 9 C 1.50697 * 120.00229 * 173.78527 * 7 2 1 10 10 H 1.09004 * 109.47265 * 54.58968 * 9 7 2 11 11 O 1.42898 * 109.47131 * 294.58837 * 9 7 2 12 12 C 1.35903 * 116.99785 * 150.13310 * 11 9 7 13 13 C 1.38791 * 120.03046 * 5.48814 * 12 11 9 14 14 C 1.38154 * 120.05658 * 180.02562 * 13 12 11 15 15 C 1.38201 * 120.10699 * 0.24491 * 14 13 12 16 16 C 1.38751 * 120.05308 * 359.45561 * 15 14 13 17 17 O 1.35903 * 120.02555 * 180.26806 * 16 15 14 18 18 C 1.38613 * 120.02575 * 185.50650 * 12 11 9 19 19 C 1.53005 * 109.47272 * 174.58853 * 9 7 2 20 20 F 1.39901 * 109.47198 * 179.49392 * 19 9 7 21 21 F 1.39902 * 109.47087 * 299.49270 * 19 9 7 22 22 F 1.39902 * 109.47061 * 59.49430 * 19 9 7 23 23 H 0.96998 * 119.99872 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.96829 * 0.02562 * 13 12 11 25 25 H 1.07996 * 119.94258 * 179.97438 * 14 13 12 26 26 H 1.07995 * 119.97140 * 179.70517 * 15 14 13 27 27 H 0.96697 * 114.00134 * 270.29960 * 17 16 15 28 28 H 1.08008 * 120.05491 * 359.95732 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5790 1.9989 -1.3968 5 1 1.4079 2.6750 0.6161 6 1 3.5031 1.4653 0.7808 7 6 2.0045 -1.1940 -0.0005 8 1 1.4692 -2.1267 0.1003 9 6 3.5048 -1.1978 -0.1418 10 1 3.9436 -0.5592 0.6248 11 8 3.8628 -0.7050 -1.4345 12 6 5.0554 -0.0621 -1.5411 13 6 5.9151 -0.0080 -0.4529 14 6 7.1273 0.6459 -0.5605 15 6 7.4848 1.2519 -1.7500 16 6 6.6316 1.1953 -2.8427 17 8 6.9861 1.7868 -4.0137 18 6 5.4140 0.5405 -2.7368 19 6 4.0290 -2.6258 0.0227 20 9 5.4207 -2.6311 -0.1199 21 9 3.6886 -3.1042 1.2926 22 9 3.4570 -3.4480 -0.9541 23 1 -0.4850 0.8400 -0.0004 24 1 5.6361 -0.4775 0.4789 25 1 7.7947 0.6872 0.2875 26 1 8.4309 1.7666 -1.8303 27 1 6.7071 2.7096 -4.0885 28 1 4.7465 0.4992 -3.5849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261148529.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:49 Heat of formation + Delta-G solvation = -204.779825 kcal Electronic energy + Delta-G solvation = -20396.430911 eV Core-core repulsion = 16577.373251 eV Total energy + Delta-G solvation = -3819.057661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.32775 -46.89741 -46.72971 -39.86708 -38.11187 -35.77843 -33.18184 -30.85529 -29.39113 -28.83166 -25.18667 -22.90738 -22.31700 -20.98972 -18.77086 -18.31737 -17.71896 -17.05199 -16.80194 -16.41890 -15.70320 -15.66180 -14.68592 -14.41711 -13.85898 -13.70806 -13.64277 -13.39007 -13.25747 -13.10315 -12.95787 -12.84105 -12.76951 -11.82754 -11.74943 -11.54610 -11.23359 -10.95747 -10.55029 -10.21530 -10.07244 -9.90563 -9.03908 -8.55647 -7.81432 -6.59044 -4.74029 1.45417 1.68468 3.06884 3.12191 3.16742 3.44531 3.65191 3.92993 4.04645 4.43259 4.68212 4.84582 5.01095 5.08008 5.14155 5.33162 5.39112 5.66087 5.78089 5.93056 6.16779 6.53908 6.61834 6.64608 6.82917 6.84633 7.73755 7.82198 8.01512 8.43107 8.94388 10.48919 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.010117 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.619575 B = 2766.881217 C = 3686.350338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.102 3.898 3 Si 0.874 3.126 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.142 3.858 10 H 0.077 0.923 11 O -0.296 6.296 12 C 0.147 3.853 13 C -0.214 4.214 14 C -0.066 4.066 15 C -0.195 4.195 16 C 0.135 3.865 17 O -0.499 6.499 18 C -0.186 4.186 19 C 0.436 3.564 20 F -0.198 7.198 21 F -0.180 7.180 22 F -0.178 7.178 23 H 0.277 0.723 24 H 0.130 0.870 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.388 0.612 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.031 3.514 -0.973 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.108 4.108 3 Si 0.699 3.301 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.560 4.560 8 H 0.117 0.883 9 C 0.087 3.913 10 H 0.094 0.906 11 O -0.210 6.210 12 C 0.100 3.900 13 C -0.233 4.233 14 C -0.084 4.084 15 C -0.214 4.214 16 C 0.091 3.909 17 O -0.309 6.309 18 C -0.205 4.205 19 C 0.382 3.618 20 F -0.180 7.180 21 F -0.162 7.162 22 F -0.159 7.159 23 H 0.087 0.913 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.244 0.756 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.944 2.974 -1.235 11.408 hybrid contribution 0.314 0.978 0.226 1.052 sum 11.258 3.953 -1.009 11.974 Atomic orbital electron populations 1.69867 1.06421 1.28579 1.43746 1.24905 0.94826 0.99478 0.91631 0.86833 0.80393 0.82787 0.80084 1.18598 1.20576 1.18502 1.20663 0.85985 0.96870 1.52494 0.88268 1.21970 0.99512 0.85517 0.84277 0.90587 1.86845 1.31184 1.67029 1.35917 1.19209 0.86519 0.90971 0.93343 1.21446 0.96308 1.06061 0.99486 1.20736 0.95402 0.95258 0.97001 1.21157 1.01249 1.06080 0.92921 1.18085 0.91878 0.96025 0.84949 1.84789 1.80605 1.30244 1.35286 1.20696 0.97641 1.04501 0.97656 1.21531 0.74293 0.92322 0.73701 1.93130 1.32087 1.97151 1.95584 1.93128 1.92091 1.89989 1.40961 1.93134 1.84495 1.75268 1.63025 0.91262 0.85181 0.85629 0.85816 0.75604 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.83 13.96 55.43 0.77 -23.05 15 2 C 0.10 2.73 5.47 -17.82 -0.10 2.63 15 3 Si 0.87 20.14 26.08 -169.99 -4.43 15.70 15 4 H -0.26 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.26 -5.69 6.48 56.52 0.37 -5.32 15 7 C -0.52 -13.95 8.80 -34.44 -0.30 -14.25 15 8 H 0.10 2.84 7.93 -52.48 -0.42 2.42 15 9 C 0.14 3.29 1.14 -27.88 -0.03 3.26 15 10 H 0.08 1.68 4.53 -51.93 -0.24 1.45 15 11 O -0.30 -6.86 8.45 -19.43 -0.16 -7.02 15 12 C 0.15 2.98 5.73 -39.24 -0.22 2.75 15 13 C -0.21 -3.91 7.59 -39.41 -0.30 -4.21 15 14 C -0.07 -1.00 10.04 -39.63 -0.40 -1.39 15 15 C -0.20 -2.84 9.98 -39.41 -0.39 -3.24 15 16 C 0.13 2.14 6.70 -39.24 -0.26 1.88 15 17 O -0.50 -6.70 13.50 -19.43 -0.26 -6.96 15 18 C -0.19 -3.42 9.93 -39.29 -0.39 -3.81 15 19 C 0.44 9.43 2.78 37.16 0.10 9.53 15 20 F -0.20 -3.93 14.53 2.25 0.03 -3.90 15 21 F -0.18 -3.80 17.04 2.25 0.04 -3.76 15 22 F -0.18 -4.03 16.91 2.25 0.04 -3.99 15 23 H 0.28 7.14 8.31 -40.82 -0.34 6.80 15 24 H 0.13 2.34 5.12 -52.49 -0.27 2.07 15 25 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.39 3.24 9.06 45.56 0.41 3.65 15 28 H 0.13 2.39 8.06 -52.48 -0.42 1.97 15 LS Contribution 258.44 15.07 3.89 3.89 Total: -1.00 -28.97 258.44 -3.33 -32.29 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -0.95 Total: 3.64 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.30 Total: -6.84 kcal Atomic # 7 Polarization: -23.83 SS G_CDS: 0.77 Total: -23.05 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.43 Total: -13.99 kcal Atomic # 9 Polarization: -11.76 SS G_CDS: 0.11 Total: -11.65 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.43 Total: 15.70 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.97 -3.33 -32.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148529.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.489 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds