Wall clock time and date at job start Mon Mar 30 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00139 * 2 1 4 4 H 1.48496 * 109.47247 * 266.10853 * 3 2 1 5 5 H 1.48496 * 109.46971 * 26.10697 * 3 2 1 6 6 H 1.48502 * 109.47278 * 146.10563 * 3 2 1 7 7 C 1.37875 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99778 * 353.78406 * 7 2 1 9 9 C 1.50697 * 120.00229 * 173.78527 * 7 2 1 10 10 H 1.09004 * 109.47265 * 54.58968 * 9 7 2 11 11 O 1.42898 * 109.47131 * 294.58837 * 9 7 2 12 12 C 1.35903 * 116.99785 * 150.13310 * 11 9 7 13 13 C 1.38791 * 120.03046 * 5.48814 * 12 11 9 14 14 C 1.38154 * 120.05658 * 180.02562 * 13 12 11 15 15 C 1.38201 * 120.10699 * 0.24491 * 14 13 12 16 16 C 1.38751 * 120.05308 * 359.45561 * 15 14 13 17 17 O 1.35903 * 120.02555 * 180.26806 * 16 15 14 18 18 C 1.38613 * 120.02575 * 185.50650 * 12 11 9 19 19 C 1.53005 * 109.47272 * 174.58853 * 9 7 2 20 20 F 1.39901 * 109.47198 * 179.49392 * 19 9 7 21 21 F 1.39902 * 109.47087 * 299.49270 * 19 9 7 22 22 F 1.39902 * 109.47061 * 59.49430 * 19 9 7 23 23 H 0.96998 * 119.99872 * 0.02562 * 1 2 3 24 24 H 1.07999 * 119.96829 * 0.02562 * 13 12 11 25 25 H 1.07996 * 119.94258 * 179.97438 * 14 13 12 26 26 H 1.07995 * 119.97140 * 179.70517 * 15 14 13 27 27 H 0.96697 * 114.00134 * 270.29960 * 17 16 15 28 28 H 1.08008 * 120.05491 * 359.95732 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5790 1.9989 -1.3968 5 1 1.4079 2.6750 0.6161 6 1 3.5031 1.4653 0.7808 7 6 2.0045 -1.1940 -0.0005 8 1 1.4692 -2.1267 0.1003 9 6 3.5048 -1.1978 -0.1418 10 1 3.9436 -0.5592 0.6248 11 8 3.8628 -0.7050 -1.4345 12 6 5.0554 -0.0621 -1.5411 13 6 5.9151 -0.0080 -0.4529 14 6 7.1273 0.6459 -0.5605 15 6 7.4848 1.2519 -1.7500 16 6 6.6316 1.1953 -2.8427 17 8 6.9861 1.7868 -4.0137 18 6 5.4140 0.5405 -2.7368 19 6 4.0290 -2.6258 0.0227 20 9 5.4207 -2.6311 -0.1199 21 9 3.6886 -3.1042 1.2926 22 9 3.4570 -3.4480 -0.9541 23 1 -0.4850 0.8400 -0.0004 24 1 5.6361 -0.4775 0.4789 25 1 7.7947 0.6872 0.2875 26 1 8.4309 1.7666 -1.8303 27 1 6.7071 2.7096 -4.0885 28 1 4.7465 0.4992 -3.5849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261148529.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:49 Heat of formation + Delta-G solvation = -224.991587 kcal Electronic energy + Delta-G solvation = -20397.307359 eV Core-core repulsion = 16577.373251 eV Total energy + Delta-G solvation = -3819.934108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.05928 -48.58884 -48.50475 -41.26901 -39.48721 -37.04628 -35.13188 -32.47163 -30.84793 -30.19630 -27.10013 -24.40597 -23.65105 -22.54433 -20.21926 -20.12146 -19.36610 -18.70282 -18.57724 -17.86239 -17.22372 -16.98955 -16.13871 -15.91701 -15.45703 -15.35412 -15.34018 -14.98047 -14.91386 -14.72257 -14.66774 -14.58301 -14.37201 -13.56714 -13.03197 -12.99367 -12.93252 -12.49684 -12.02898 -11.95572 -11.72608 -11.51841 -11.04367 -9.82109 -9.20938 -8.61204 -6.82216 0.20525 0.38740 1.24965 1.28444 1.34642 1.73384 2.01855 2.14665 2.61700 2.90470 2.96595 3.17087 3.28234 3.48972 3.85614 3.96028 4.15149 4.21613 4.48485 4.55775 4.84676 4.94314 5.27633 5.39947 5.41999 5.66994 5.81150 6.28743 6.44595 6.82232 6.90421 8.51108 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.010117 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.619575 B = 2766.881217 C = 3686.350338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.927 3.073 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.239 1.239 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.151 3.849 10 H 0.092 0.908 11 O -0.319 6.319 12 C 0.111 3.889 13 C -0.231 4.231 14 C -0.057 4.057 15 C -0.181 4.181 16 C 0.143 3.857 17 O -0.502 6.502 18 C -0.206 4.206 19 C 0.440 3.560 20 F -0.183 7.183 21 F -0.178 7.178 22 F -0.187 7.187 23 H 0.282 0.718 24 H 0.128 0.872 25 H 0.164 0.836 26 H 0.161 0.839 27 H 0.413 0.587 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.228 5.397 -0.883 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.149 4.149 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.163 1.163 7 C -0.578 4.578 8 H 0.080 0.920 9 C 0.095 3.905 10 H 0.109 0.891 11 O -0.233 6.233 12 C 0.065 3.935 13 C -0.249 4.249 14 C -0.075 4.075 15 C -0.200 4.200 16 C 0.099 3.901 17 O -0.315 6.315 18 C -0.225 4.225 19 C 0.386 3.614 20 F -0.165 7.165 21 F -0.159 7.159 22 F -0.169 7.169 23 H 0.092 0.908 24 H 0.145 0.855 25 H 0.182 0.818 26 H 0.178 0.822 27 H 0.273 0.727 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.155 4.871 -1.148 15.013 hybrid contribution -0.530 0.392 0.085 0.664 sum 13.625 5.263 -1.064 14.645 Atomic orbital electron populations 1.69960 1.07984 1.29735 1.45683 1.25666 0.95475 1.02740 0.91039 0.85998 0.80112 0.78809 0.80174 1.18919 1.19489 1.16257 1.20699 0.88037 0.95685 1.53330 0.91961 1.21664 0.97452 0.86589 0.84764 0.89139 1.86668 1.33445 1.68335 1.34887 1.19468 0.86144 0.92794 0.95085 1.21578 0.97448 1.07163 0.98730 1.21176 0.94402 0.93343 0.98532 1.21581 1.01938 1.04642 0.91809 1.18151 0.90845 0.95198 0.85953 1.84734 1.80328 1.32192 1.34283 1.20838 0.99075 1.05551 0.97045 1.21332 0.74847 0.91670 0.73582 1.93150 1.30754 1.97072 1.95514 1.93129 1.92173 1.89907 1.40718 1.93111 1.84816 1.75465 1.63501 0.90810 0.85453 0.81830 0.82162 0.72734 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.85 13.96 21.45 0.30 -51.55 15 2 C 0.06 3.11 5.47 84.65 0.46 3.58 15 3 Si 0.93 41.25 26.08 68.60 1.79 43.04 15 4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 15 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 6 H -0.24 -9.69 6.48 99.48 0.64 -9.05 15 7 C -0.54 -29.74 8.80 25.60 0.23 -29.51 15 8 H 0.06 3.77 7.93 -2.91 -0.02 3.75 15 9 C 0.15 7.01 1.14 29.85 0.03 7.05 15 10 H 0.09 3.92 4.53 -2.38 -0.01 3.91 15 11 O -0.32 -14.80 8.45 -92.45 -0.78 -15.59 15 12 C 0.11 4.35 5.73 22.49 0.13 4.48 15 13 C -0.23 -7.77 7.59 22.38 0.17 -7.60 15 14 C -0.06 -1.45 10.04 22.24 0.22 -1.23 15 15 C -0.18 -4.34 9.98 22.38 0.22 -4.12 15 16 C 0.14 4.03 6.70 22.49 0.15 4.18 15 17 O -0.50 -11.53 13.50 -92.45 -1.25 -12.78 15 18 C -0.21 -7.25 9.93 22.46 0.22 -7.03 15 19 C 0.44 19.08 2.78 71.98 0.20 19.28 15 20 F -0.18 -7.09 14.53 44.97 0.65 -6.43 15 21 F -0.18 -7.52 17.04 44.97 0.77 -6.75 15 22 F -0.19 -8.68 16.91 44.97 0.76 -7.92 15 23 H 0.28 14.95 8.31 -92.71 -0.77 14.18 15 24 H 0.13 4.27 5.12 -2.91 -0.01 4.26 15 25 H 0.16 2.92 8.06 -2.91 -0.02 2.89 15 26 H 0.16 2.72 8.06 -2.91 -0.02 2.70 15 27 H 0.41 5.18 9.06 -74.06 -0.67 4.51 15 28 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 Total: -1.00 -63.90 258.44 4.78 -59.12 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.50 Total: 9.78 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 2.04 Total: -10.92 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.30 Total: -51.55 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -2.03 Total: -28.37 kcal Atomic # 9 Polarization: -23.28 SS G_CDS: 2.18 Total: -21.10 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.79 Total: 43.04 kcal Total: -63.90 4.78 -59.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261148529.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.867 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds