Wall clock time and date at job start Mon Mar 30 2020 06:18:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86798 * 120.00139 * 2 1
4 4 H 1.48496 * 109.47247 * 266.10853 * 3 2 1
5 5 H 1.48496 * 109.46971 * 26.10697 * 3 2 1
6 6 H 1.48502 * 109.47278 * 146.10563 * 3 2 1
7 7 C 1.37875 * 120.00071 * 180.02562 * 2 1 3
8 8 H 1.08007 * 119.99778 * 353.78406 * 7 2 1
9 9 C 1.50697 * 120.00229 * 173.78527 * 7 2 1
10 10 H 1.09004 * 109.47265 * 54.58968 * 9 7 2
11 11 O 1.42898 * 109.47131 * 294.58837 * 9 7 2
12 12 C 1.35903 * 116.99785 * 150.13310 * 11 9 7
13 13 C 1.38791 * 120.03046 * 5.48814 * 12 11 9
14 14 C 1.38154 * 120.05658 * 180.02562 * 13 12 11
15 15 C 1.38201 * 120.10699 * 0.24491 * 14 13 12
16 16 C 1.38751 * 120.05308 * 359.45561 * 15 14 13
17 17 O 1.35903 * 120.02555 * 180.26806 * 16 15 14
18 18 C 1.38613 * 120.02575 * 185.50650 * 12 11 9
19 19 C 1.53005 * 109.47272 * 174.58853 * 9 7 2
20 20 F 1.39901 * 109.47198 * 179.49392 * 19 9 7
21 21 F 1.39902 * 109.47087 * 299.49270 * 19 9 7
22 22 F 1.39902 * 109.47061 * 59.49430 * 19 9 7
23 23 H 0.96998 * 119.99872 * 0.02562 * 1 2 3
24 24 H 1.07999 * 119.96829 * 0.02562 * 13 12 11
25 25 H 1.07996 * 119.94258 * 179.97438 * 14 13 12
26 26 H 1.07995 * 119.97140 * 179.70517 * 15 14 13
27 27 H 0.96697 * 114.00134 * 270.29960 * 17 16 15
28 28 H 1.08008 * 120.05491 * 359.95732 * 18 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.5790 1.9989 -1.3968
5 1 1.4079 2.6750 0.6161
6 1 3.5031 1.4653 0.7808
7 6 2.0045 -1.1940 -0.0005
8 1 1.4692 -2.1267 0.1003
9 6 3.5048 -1.1978 -0.1418
10 1 3.9436 -0.5592 0.6248
11 8 3.8628 -0.7050 -1.4345
12 6 5.0554 -0.0621 -1.5411
13 6 5.9151 -0.0080 -0.4529
14 6 7.1273 0.6459 -0.5605
15 6 7.4848 1.2519 -1.7500
16 6 6.6316 1.1953 -2.8427
17 8 6.9861 1.7868 -4.0137
18 6 5.4140 0.5405 -2.7368
19 6 4.0290 -2.6258 0.0227
20 9 5.4207 -2.6311 -0.1199
21 9 3.6886 -3.1042 1.2926
22 9 3.4570 -3.4480 -0.9541
23 1 -0.4850 0.8400 -0.0004
24 1 5.6361 -0.4775 0.4789
25 1 7.7947 0.6872 0.2875
26 1 8.4309 1.7666 -1.8303
27 1 6.7071 2.7096 -4.0885
28 1 4.7465 0.4992 -3.5849
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261148529.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:18:49
Heat of formation + Delta-G solvation = -224.991587 kcal
Electronic energy + Delta-G solvation = -20397.307359 eV
Core-core repulsion = 16577.373251 eV
Total energy + Delta-G solvation = -3819.934108 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.060 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-51.05928 -48.58884 -48.50475 -41.26901 -39.48721 -37.04628 -35.13188 -32.47163
-30.84793 -30.19630 -27.10013 -24.40597 -23.65105 -22.54433 -20.21926 -20.12146
-19.36610 -18.70282 -18.57724 -17.86239 -17.22372 -16.98955 -16.13871 -15.91701
-15.45703 -15.35412 -15.34018 -14.98047 -14.91386 -14.72257 -14.66774 -14.58301
-14.37201 -13.56714 -13.03197 -12.99367 -12.93252 -12.49684 -12.02898 -11.95572
-11.72608 -11.51841 -11.04367 -9.82109 -9.20938 -8.61204 -6.82216 0.20525
0.38740 1.24965 1.28444 1.34642 1.73384 2.01855 2.14665 2.61700
2.90470 2.96595 3.17087 3.28234 3.48972 3.85614 3.96028 4.15149
4.21613 4.48485 4.55775 4.84676 4.94314 5.27633 5.39947 5.41999
5.66994 5.81150 6.28743 6.44595 6.82232 6.90421 8.51108
Molecular weight = 262.06amu
Principal moments of inertia in cm(-1)
A = 0.018135 B = 0.010117 C = 0.007594
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1543.619575 B = 2766.881217 C = 3686.350338
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.057 3.943
3 Si 0.927 3.073
4 H -0.264 1.264
5 H -0.270 1.270
6 H -0.239 1.239
7 C -0.542 4.542
8 H 0.062 0.938
9 C 0.151 3.849
10 H 0.092 0.908
11 O -0.319 6.319
12 C 0.111 3.889
13 C -0.231 4.231
14 C -0.057 4.057
15 C -0.181 4.181
16 C 0.143 3.857
17 O -0.502 6.502
18 C -0.206 4.206
19 C 0.440 3.560
20 F -0.183 7.183
21 F -0.178 7.178
22 F -0.187 7.187
23 H 0.282 0.718
24 H 0.128 0.872
25 H 0.164 0.836
26 H 0.161 0.839
27 H 0.413 0.587
28 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.228 5.397 -0.883 15.243
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.149 4.149
3 Si 0.749 3.251
4 H -0.189 1.189
5 H -0.195 1.195
6 H -0.163 1.163
7 C -0.578 4.578
8 H 0.080 0.920
9 C 0.095 3.905
10 H 0.109 0.891
11 O -0.233 6.233
12 C 0.065 3.935
13 C -0.249 4.249
14 C -0.075 4.075
15 C -0.200 4.200
16 C 0.099 3.901
17 O -0.315 6.315
18 C -0.225 4.225
19 C 0.386 3.614
20 F -0.165 7.165
21 F -0.159 7.159
22 F -0.169 7.169
23 H 0.092 0.908
24 H 0.145 0.855
25 H 0.182 0.818
26 H 0.178 0.822
27 H 0.273 0.727
28 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 14.155 4.871 -1.148 15.013
hybrid contribution -0.530 0.392 0.085 0.664
sum 13.625 5.263 -1.064 14.645
Atomic orbital electron populations
1.69960 1.07984 1.29735 1.45683 1.25666 0.95475 1.02740 0.91039
0.85998 0.80112 0.78809 0.80174 1.18919 1.19489 1.16257 1.20699
0.88037 0.95685 1.53330 0.91961 1.21664 0.97452 0.86589 0.84764
0.89139 1.86668 1.33445 1.68335 1.34887 1.19468 0.86144 0.92794
0.95085 1.21578 0.97448 1.07163 0.98730 1.21176 0.94402 0.93343
0.98532 1.21581 1.01938 1.04642 0.91809 1.18151 0.90845 0.95198
0.85953 1.84734 1.80328 1.32192 1.34283 1.20838 0.99075 1.05551
0.97045 1.21332 0.74847 0.91670 0.73582 1.93150 1.30754 1.97072
1.95514 1.93129 1.92173 1.89907 1.40718 1.93111 1.84816 1.75465
1.63501 0.90810 0.85453 0.81830 0.82162 0.72734 0.85548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -51.85 13.96 21.45 0.30 -51.55 15
2 C 0.06 3.11 5.47 84.65 0.46 3.58 15
3 Si 0.93 41.25 26.08 68.60 1.79 43.04 15
4 H -0.26 -11.82 7.11 99.48 0.71 -11.11 15
5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15
6 H -0.24 -9.69 6.48 99.48 0.64 -9.05 15
7 C -0.54 -29.74 8.80 25.60 0.23 -29.51 15
8 H 0.06 3.77 7.93 -2.91 -0.02 3.75 15
9 C 0.15 7.01 1.14 29.85 0.03 7.05 15
10 H 0.09 3.92 4.53 -2.38 -0.01 3.91 15
11 O -0.32 -14.80 8.45 -92.45 -0.78 -15.59 15
12 C 0.11 4.35 5.73 22.49 0.13 4.48 15
13 C -0.23 -7.77 7.59 22.38 0.17 -7.60 15
14 C -0.06 -1.45 10.04 22.24 0.22 -1.23 15
15 C -0.18 -4.34 9.98 22.38 0.22 -4.12 15
16 C 0.14 4.03 6.70 22.49 0.15 4.18 15
17 O -0.50 -11.53 13.50 -92.45 -1.25 -12.78 15
18 C -0.21 -7.25 9.93 22.46 0.22 -7.03 15
19 C 0.44 19.08 2.78 71.98 0.20 19.28 15
20 F -0.18 -7.09 14.53 44.97 0.65 -6.43 15
21 F -0.18 -7.52 17.04 44.97 0.77 -6.75 15
22 F -0.19 -8.68 16.91 44.97 0.76 -7.92 15
23 H 0.28 14.95 8.31 -92.71 -0.77 14.18 15
24 H 0.13 4.27 5.12 -2.91 -0.01 4.26 15
25 H 0.16 2.92 8.06 -2.91 -0.02 2.89 15
26 H 0.16 2.72 8.06 -2.91 -0.02 2.70 15
27 H 0.41 5.18 9.06 -74.06 -0.67 4.51 15
28 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15
Total: -1.00 -63.90 258.44 4.78 -59.12
By element:
Atomic # 1 Polarization: 9.28 SS G_CDS: 0.50 Total: 9.78 kcal
Atomic # 6 Polarization: -12.96 SS G_CDS: 2.04 Total: -10.92 kcal
Atomic # 7 Polarization: -51.85 SS G_CDS: 0.30 Total: -51.55 kcal
Atomic # 8 Polarization: -26.34 SS G_CDS: -2.03 Total: -28.37 kcal
Atomic # 9 Polarization: -23.28 SS G_CDS: 2.18 Total: -21.10 kcal
Atomic # 14 Polarization: 41.25 SS G_CDS: 1.79 Total: 43.04 kcal
Total: -63.90 4.78 -59.12 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261148529.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -165.867 kcal
(2) G-P(sol) polarization free energy of solvation -63.903 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) -224.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds