Wall clock time and date at job start Mon Mar 30 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47090 * 300.00305 * 3 2 1 6 6 H 1.48500 * 109.46992 * 60.00558 * 3 2 1 7 7 C 1.37879 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99925 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.61727 * 58.04834 * 9 7 2 11 11 C 1.51886 * 108.66216 * 300.00389 * 9 7 2 12 12 C 1.53532 * 108.95719 * 178.57493 * 11 9 7 13 13 S 1.81610 * 107.30998 * 72.61918 * 12 11 9 14 14 C 1.76460 * 102.62626 * 313.59407 * 13 12 11 15 15 C 1.39638 * 117.72402 * 192.78841 * 14 13 12 16 16 C 1.37738 * 120.62678 * 180.64118 * 15 14 13 17 17 C 1.38342 * 119.50927 * 0.25940 * 16 15 14 18 18 C 1.50706 * 119.99142 * 179.66895 * 17 16 15 19 19 C 1.50699 * 109.46817 * 90.00246 * 18 17 16 20 20 O 1.20762 * 120.00043 * 125.00167 * 19 18 17 21 21 C 1.37765 * 120.01347 * 359.94866 * 17 16 15 22 22 C 1.38179 * 122.30220 * 13.22366 * 14 13 12 23 23 H 0.97000 * 119.99991 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.55746 * 58.73050 * 11 9 7 25 25 H 1.08991 * 109.63817 * 298.46753 * 11 9 7 26 26 H 1.08995 * 109.89264 * 313.16749 * 12 11 9 27 27 H 1.09000 * 109.88329 * 192.06424 * 12 11 9 28 28 H 1.08001 * 119.68423 * 0.61095 * 15 14 13 29 29 H 1.07998 * 120.24061 * 180.24016 * 16 15 14 30 30 H 1.09000 * 109.47318 * 209.99625 * 18 17 16 31 31 H 1.09000 * 109.47161 * 330.00256 * 18 17 16 32 32 H 1.08001 * 120.00132 * 304.99950 * 19 18 17 33 33 H 1.07997 * 119.46692 * 179.57088 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6033 -2.5270 -0.8768 11 6 0.3854 -2.5606 1.2460 12 6 -0.4126 -3.8722 1.2349 13 16 0.7533 -5.2171 1.5954 14 6 2.1134 -4.8431 0.5352 15 6 3.0861 -5.8285 0.3542 16 6 4.1797 -5.5956 -0.4501 17 6 4.3149 -4.3706 -1.0785 18 6 5.5110 -4.1014 -1.9550 19 6 5.1979 -4.5098 -3.3714 20 8 5.3257 -3.7148 -4.2713 21 6 3.3593 -3.3947 -0.8987 22 6 2.2411 -3.6222 -0.0992 23 1 -0.4850 0.8400 0.0004 24 1 -0.3025 -1.7151 1.2545 25 1 1.0176 -2.5257 2.1331 26 1 -0.8624 -4.0244 0.2538 27 1 -1.1893 -3.8401 1.9990 28 1 2.9801 -6.7822 0.8499 29 1 4.9263 -6.3635 -0.5888 30 1 5.7495 -3.0381 -1.9278 31 1 6.3640 -4.6745 -1.5917 32 1 4.8592 -5.5136 -3.5816 33 1 3.4772 -2.4391 -1.3879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:01 Heat of formation + Delta-G solvation = -24.894356 kcal Electronic energy + Delta-G solvation = -17152.630156 eV Core-core repulsion = 14461.815621 eV Total energy + Delta-G solvation = -2690.814535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.44692 -38.52531 -35.52040 -32.69604 -31.79076 -30.43554 -27.67876 -27.10307 -23.67718 -22.41169 -22.02954 -20.96901 -19.19737 -17.04737 -16.55660 -16.26896 -15.18732 -14.96677 -14.84842 -14.65048 -14.37197 -13.67735 -13.17731 -13.06067 -12.74601 -12.42126 -12.04490 -11.88437 -11.72445 -11.71031 -11.02716 -10.88450 -10.63574 -10.42160 -10.30335 -9.88223 -9.71664 -9.38334 -9.10044 -8.82259 -8.50922 -8.04549 -6.78841 -6.17497 -4.24763 1.62859 1.94737 2.11030 2.27331 3.01249 3.21361 3.30286 3.33937 4.11512 4.31900 4.52856 5.01631 5.10688 5.13891 5.43046 5.43584 5.53342 5.68634 5.80129 5.87250 6.03821 6.09174 6.24785 6.38191 6.54670 6.74207 6.81130 6.84689 7.00597 7.24181 7.41640 7.46705 7.47692 7.68498 7.89530 8.18121 8.77037 9.41035 10.87974 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.009311 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.844336 B = 3006.457651 C = 4792.722750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.067 3.933 10 H 0.047 0.953 11 C -0.111 4.111 12 C -0.093 4.093 13 S -0.172 6.172 14 C -0.081 4.081 15 C -0.107 4.107 16 C -0.122 4.122 17 C -0.105 4.105 18 C -0.143 4.143 19 C 0.354 3.646 20 O -0.466 6.466 21 C -0.087 4.087 22 C -0.033 4.033 23 H 0.263 0.737 24 H 0.114 0.886 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 -10.163 0.090 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.049 3.951 10 H 0.065 0.935 11 C -0.150 4.150 12 C -0.241 4.241 13 S 0.070 5.930 14 C -0.193 4.193 15 C -0.130 4.130 16 C -0.141 4.141 17 C -0.107 4.107 18 C -0.181 4.181 19 C 0.210 3.790 20 O -0.337 6.337 21 C -0.107 4.107 22 C -0.039 4.039 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.726 -10.487 0.426 11.511 hybrid contribution 0.539 1.828 -0.616 2.003 sum 5.265 -8.659 -0.191 10.136 Atomic orbital electron populations 1.69820 1.05916 1.26788 1.50202 1.24969 0.94937 0.99302 0.94704 0.86479 0.80216 0.83386 0.77712 1.19606 1.20879 1.20881 1.21245 0.93078 0.89373 1.51207 0.91729 1.17581 0.91901 0.90376 0.95232 0.93543 1.21759 0.99263 0.94716 0.99258 1.23942 0.98375 0.97271 1.04485 1.84855 1.14777 1.39245 1.54115 1.21359 0.98843 0.96675 1.02419 1.20715 0.94346 0.97928 1.00045 1.20651 0.98075 0.96473 0.98924 1.19314 0.96304 0.95086 0.99992 1.21392 0.97558 1.04580 0.94531 1.26013 0.71299 0.92461 0.89249 1.90403 1.39134 1.55345 1.48791 1.21479 0.92576 0.98835 0.97802 1.20421 0.96650 0.92983 0.93825 0.92711 0.86776 0.92905 0.90028 0.88784 0.86447 0.86272 0.88777 0.87992 0.89047 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.26 55.43 0.62 -23.15 16 2 C 0.06 1.63 5.28 -17.82 -0.09 1.54 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.12 7.51 -34.44 -0.26 -13.38 16 8 H 0.06 1.65 6.28 -52.49 -0.33 1.32 16 9 C 0.07 1.59 1.91 -93.81 -0.18 1.41 16 10 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.11 -2.47 4.86 -27.02 -0.13 -2.60 16 12 C -0.09 -1.73 6.52 37.43 0.24 -1.48 16 13 S -0.17 -3.09 21.99 -107.50 -2.36 -5.46 16 14 C -0.08 -1.54 6.05 -39.08 -0.24 -1.78 16 15 C -0.11 -1.72 9.65 -39.24 -0.38 -2.10 16 16 C -0.12 -1.72 9.72 -39.73 -0.39 -2.10 16 17 C -0.10 -1.62 5.10 -104.75 -0.53 -2.15 16 18 C -0.14 -1.77 5.92 -29.03 -0.17 -1.94 16 19 C 0.35 4.43 11.17 36.01 0.40 4.83 16 20 O -0.47 -7.75 17.90 6.00 0.11 -7.64 16 21 C -0.09 -1.69 8.24 -39.35 -0.32 -2.02 16 22 C -0.03 -0.70 5.52 -104.56 -0.58 -1.28 16 23 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.11 2.79 5.94 -51.93 -0.31 2.48 16 25 H 0.05 1.21 8.03 -51.93 -0.42 0.79 16 26 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.12 1.65 8.05 -52.49 -0.42 1.23 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.09 1.28 8.06 -51.93 -0.42 0.86 16 31 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.09 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.14 2.82 6.45 -52.49 -0.34 2.48 16 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -28.25 289.16 -8.82 -37.07 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.90 Total: 2.37 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.63 Total: -23.06 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.62 Total: -23.15 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.11 Total: -7.64 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.36 Total: -5.46 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.25 -8.82 -37.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.176 kcal (2) G-P(sol) polarization free energy of solvation -28.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds