Wall clock time and date at job start Mon Mar 30 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47344 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47090 * 300.00305 * 3 2 1 6 6 H 1.48500 * 109.46992 * 60.00558 * 3 2 1 7 7 C 1.37879 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00230 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99925 * 359.97438 * 7 2 1 10 10 H 1.09000 * 108.61727 * 58.04834 * 9 7 2 11 11 C 1.51886 * 108.66216 * 300.00389 * 9 7 2 12 12 C 1.53532 * 108.95719 * 178.57493 * 11 9 7 13 13 S 1.81610 * 107.30998 * 72.61918 * 12 11 9 14 14 C 1.76460 * 102.62626 * 313.59407 * 13 12 11 15 15 C 1.39638 * 117.72402 * 192.78841 * 14 13 12 16 16 C 1.37738 * 120.62678 * 180.64118 * 15 14 13 17 17 C 1.38342 * 119.50927 * 0.25940 * 16 15 14 18 18 C 1.50706 * 119.99142 * 179.66895 * 17 16 15 19 19 C 1.50699 * 109.46817 * 90.00246 * 18 17 16 20 20 O 1.20762 * 120.00043 * 125.00167 * 19 18 17 21 21 C 1.37765 * 120.01347 * 359.94866 * 17 16 15 22 22 C 1.38179 * 122.30220 * 13.22366 * 14 13 12 23 23 H 0.97000 * 119.99991 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.55746 * 58.73050 * 11 9 7 25 25 H 1.08991 * 109.63817 * 298.46753 * 11 9 7 26 26 H 1.08995 * 109.89264 * 313.16749 * 12 11 9 27 27 H 1.09000 * 109.88329 * 192.06424 * 12 11 9 28 28 H 1.08001 * 119.68423 * 0.61095 * 15 14 13 29 29 H 1.07998 * 120.24061 * 180.24016 * 16 15 14 30 30 H 1.09000 * 109.47318 * 209.99625 * 18 17 16 31 31 H 1.09000 * 109.47161 * 330.00256 * 18 17 16 32 32 H 1.08001 * 120.00132 * 304.99950 * 19 18 17 33 33 H 1.07997 * 119.46692 * 179.57088 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6033 -2.5270 -0.8768 11 6 0.3854 -2.5606 1.2460 12 6 -0.4126 -3.8722 1.2349 13 16 0.7533 -5.2171 1.5954 14 6 2.1134 -4.8431 0.5352 15 6 3.0861 -5.8285 0.3542 16 6 4.1797 -5.5956 -0.4501 17 6 4.3149 -4.3706 -1.0785 18 6 5.5110 -4.1014 -1.9550 19 6 5.1979 -4.5098 -3.3714 20 8 5.3257 -3.7148 -4.2713 21 6 3.3593 -3.3947 -0.8987 22 6 2.2411 -3.6222 -0.0992 23 1 -0.4850 0.8400 0.0004 24 1 -0.3025 -1.7151 1.2545 25 1 1.0176 -2.5257 2.1331 26 1 -0.8624 -4.0244 0.2538 27 1 -1.1893 -3.8401 1.9990 28 1 2.9801 -6.7822 0.8499 29 1 4.9263 -6.3635 -0.5888 30 1 5.7495 -3.0381 -1.9278 31 1 6.3640 -4.6745 -1.5917 32 1 4.8592 -5.5136 -3.5816 33 1 3.4772 -2.4391 -1.3879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:01 Heat of formation + Delta-G solvation = -39.528228 kcal Electronic energy + Delta-G solvation = -17153.264728 eV Core-core repulsion = 14461.815621 eV Total energy + Delta-G solvation = -2691.449108 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.71888 -39.77178 -37.17728 -34.24182 -33.41468 -31.91912 -28.91555 -28.82672 -25.49113 -23.76140 -23.41375 -22.24465 -20.70971 -18.65687 -18.28510 -17.38339 -16.76953 -16.36539 -16.08673 -16.01991 -15.86087 -15.06465 -14.69597 -14.62365 -14.38575 -13.82179 -13.59129 -13.49918 -13.13666 -12.89323 -12.85386 -12.58583 -12.20177 -12.09832 -12.02349 -11.47586 -11.15135 -10.91537 -10.84143 -10.49109 -10.11318 -9.49193 -8.20171 -8.17678 -6.31007 0.29955 0.59383 0.83247 1.10588 1.34696 1.38075 1.47942 1.52711 2.36191 2.80548 3.09991 3.58492 3.86581 4.00767 4.09597 4.15145 4.21539 4.36730 4.52677 4.55961 4.61531 4.81597 4.88127 4.93840 5.08780 5.13407 5.30429 5.42571 5.50781 5.56267 5.69605 5.73525 6.02173 6.14961 6.28665 6.47694 6.75822 7.36637 8.86265 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.009311 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.844336 B = 3006.457651 C = 4792.722750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.071 3.929 10 H 0.006 0.994 11 C -0.102 4.102 12 C -0.092 4.092 13 S -0.143 6.143 14 C -0.104 4.104 15 C -0.105 4.105 16 C -0.097 4.097 17 C -0.091 4.091 18 C -0.141 4.141 19 C 0.362 3.638 20 O -0.514 6.514 21 C -0.113 4.113 22 C -0.069 4.069 23 H 0.263 0.737 24 H 0.087 0.913 25 H 0.040 0.960 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.146 0.854 29 H 0.176 0.824 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.139 0.861 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 -12.921 0.506 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.053 3.947 10 H 0.024 0.976 11 C -0.141 4.141 12 C -0.240 4.240 13 S 0.098 5.902 14 C -0.216 4.216 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.178 4.178 19 C 0.222 3.778 20 O -0.389 6.389 21 C -0.133 4.133 22 C -0.074 4.074 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.059 0.941 26 H 0.096 0.904 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.193 0.807 30 H 0.092 0.908 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.726 -13.256 0.852 14.890 hybrid contribution -0.010 2.595 -0.758 2.703 sum 6.717 -10.661 0.094 12.601 Atomic orbital electron populations 1.69941 1.06917 1.27310 1.51036 1.25665 0.95710 1.02122 0.94743 0.85610 0.79109 0.79981 0.77683 1.19394 1.20773 1.20319 1.21523 0.92968 0.90825 1.50648 0.92466 1.17399 0.92090 0.91200 0.94054 0.97592 1.21489 0.98677 0.95933 0.97997 1.23810 0.98933 0.96001 1.05231 1.84612 1.13932 1.37665 1.53954 1.21625 1.00333 0.96757 1.02888 1.21143 0.93740 0.98028 0.99907 1.21218 0.97933 0.96483 0.96007 1.19536 0.95694 0.94600 0.99550 1.21464 0.97657 1.04354 0.94326 1.26579 0.69289 0.93553 0.88419 1.90412 1.41339 1.57043 1.50079 1.21363 0.94010 0.99183 0.98765 1.20179 0.97136 0.93436 0.96638 0.92739 0.89490 0.94144 0.90432 0.86471 0.83598 0.80668 0.90820 0.83394 0.84525 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.21 11.26 21.45 0.24 -50.96 16 2 C 0.02 0.91 5.28 84.66 0.45 1.36 16 3 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.52 -28.30 7.51 25.60 0.19 -28.11 16 8 H 0.06 3.10 6.28 -2.91 -0.02 3.08 16 9 C 0.07 3.55 1.91 -12.86 -0.02 3.53 16 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 11 C -0.10 -4.75 4.86 30.41 0.15 -4.60 16 12 C -0.09 -3.47 6.52 72.16 0.47 -2.99 16 13 S -0.14 -4.97 21.99 -56.49 -1.24 -6.21 16 14 C -0.10 -3.83 6.05 22.59 0.14 -3.70 16 15 C -0.11 -2.96 9.65 22.49 0.22 -2.74 16 16 C -0.10 -2.23 9.72 22.18 0.22 -2.01 16 17 C -0.09 -2.58 5.10 -19.95 -0.10 -2.68 16 18 C -0.14 -3.03 5.92 29.10 0.17 -2.86 16 19 C 0.36 8.00 11.17 71.24 0.80 8.79 16 20 O -0.51 -16.67 17.90 -1.46 -0.03 -16.69 16 21 C -0.11 -4.48 8.24 22.42 0.18 -4.29 16 22 C -0.07 -2.96 5.52 -19.82 -0.11 -3.07 16 23 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.09 4.51 5.94 -2.39 -0.01 4.50 16 25 H 0.04 1.93 8.03 -2.39 -0.02 1.91 16 26 H 0.08 2.97 8.08 -2.39 -0.02 2.95 16 27 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.15 3.30 8.05 -2.91 -0.02 3.28 16 29 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 31 H 0.15 1.87 8.09 -2.39 -0.02 1.85 16 32 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.10 4.66 6.45 -2.91 -0.02 4.64 16 Total: -1.00 -66.22 289.16 4.86 -61.37 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.11 Total: 10.30 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 2.74 Total: -43.39 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.24 Total: -50.96 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.03 Total: -16.69 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -1.24 Total: -6.21 kcal Total: -66.22 4.86 -61.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.840 kcal (2) G-P(sol) polarization free energy of solvation -66.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds