Wall clock time and date at job start Mon Mar 30 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99852 * 2 1 4 4 H 1.48508 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47036 * 299.99526 * 3 2 1 6 6 H 1.48496 * 109.47635 * 59.99891 * 3 2 1 7 7 C 1.37877 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00162 * 0.02562 * 7 2 1 10 10 H 1.08994 * 108.51404 * 297.99455 * 9 7 2 11 11 C 1.51876 * 108.67089 * 56.00359 * 9 7 2 12 12 C 1.53521 * 108.97913 * 181.68937 * 11 9 7 13 13 S 1.81605 * 107.33516 * 287.46926 * 12 11 9 14 14 C 1.76452 * 102.63436 * 46.42456 * 13 12 11 15 15 C 1.39632 * 117.72288 * 167.15872 * 14 13 12 16 16 C 1.37745 * 120.61992 * 178.44567 * 15 14 13 17 17 C 1.38343 * 119.51574 * 0.12404 * 16 15 14 18 18 C 1.50697 * 119.99476 * 180.42994 * 17 16 15 19 19 C 1.50702 * 109.46970 * 90.00049 * 18 17 16 20 20 O 1.20761 * 119.99917 * 124.99709 * 19 18 17 21 21 C 1.37760 * 120.00857 * 0.41128 * 17 16 15 22 22 C 1.38171 * 122.30193 * 346.38437 * 14 13 12 23 23 H 0.96996 * 120.00008 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.55375 * 301.53398 * 11 9 7 25 25 H 1.08998 * 109.55877 * 61.83404 * 11 9 7 26 26 H 1.09000 * 109.88057 * 46.92963 * 12 11 9 27 27 H 1.09003 * 109.88183 * 167.93528 * 12 11 9 28 28 H 1.08001 * 119.69059 * 358.72485 * 15 14 13 29 29 H 1.07999 * 120.24284 * 180.10250 * 16 15 14 30 30 H 1.08993 * 109.47493 * 209.99984 * 18 17 16 31 31 H 1.09001 * 109.47031 * 330.00421 * 18 17 16 32 32 H 1.08004 * 120.00148 * 305.00428 * 19 18 17 33 33 H 1.08003 * 119.47349 * 179.74280 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6575 -2.5561 0.9129 11 6 0.3117 -2.5182 -1.1927 12 6 -0.4905 -3.8271 -1.1758 13 16 0.6452 -5.1639 -1.6462 14 6 2.0670 -4.8285 -0.6565 15 6 3.0427 -5.8229 -0.5630 16 6 4.1914 -5.6124 0.1674 17 6 4.3753 -4.4039 0.8152 18 6 5.6323 -4.1584 1.6093 19 6 6.6813 -3.5507 0.7141 20 8 7.2037 -2.5055 1.0193 21 6 3.4096 -3.4248 0.7341 22 6 2.2420 -3.6259 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3715 -1.6709 -1.1328 25 1 0.8908 -2.4571 -2.1141 26 1 -0.8826 -4.0086 -0.1751 27 1 -1.3115 -3.7680 -1.8904 28 1 2.8974 -6.7644 -1.0720 29 1 4.9429 -6.3852 0.2342 30 1 5.4157 -3.4755 2.4306 31 1 5.9995 -5.1034 2.0096 32 1 6.9659 -4.0498 -0.2004 33 1 3.5602 -2.4861 1.2467 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:03 Heat of formation + Delta-G solvation = -23.534051 kcal Electronic energy + Delta-G solvation = -17198.015350 eV Core-core repulsion = 14507.259802 eV Total energy + Delta-G solvation = -2690.755548 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43758 -38.50773 -35.53036 -32.69988 -31.76509 -30.43638 -27.67217 -27.09837 -23.68233 -22.39123 -22.02258 -20.96309 -19.18177 -17.04419 -16.54718 -16.25417 -15.18508 -14.96216 -14.84124 -14.63558 -14.36794 -13.66410 -13.18471 -13.06353 -12.71201 -12.35202 -12.04036 -11.88147 -11.83504 -11.67183 -11.01327 -10.85364 -10.61328 -10.40966 -10.24465 -9.86035 -9.78416 -9.38560 -9.03510 -8.82693 -8.49887 -8.04424 -6.78036 -6.15869 -4.25053 1.63086 1.94750 2.14544 2.27839 3.02746 3.22013 3.31028 3.36958 4.11966 4.32574 4.55038 5.02538 5.10555 5.13277 5.43258 5.44268 5.53237 5.69956 5.81661 5.87682 6.03583 6.10007 6.26315 6.38324 6.55019 6.75491 6.81571 6.85652 7.00545 7.26492 7.43238 7.47972 7.49203 7.69019 7.94682 8.19686 8.76629 9.41400 10.87202 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.010125 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.917078 B = 2764.660452 C = 4759.201906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.068 3.932 10 H 0.044 0.956 11 C -0.116 4.116 12 C -0.092 4.092 13 S -0.173 6.173 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.122 4.122 17 C -0.104 4.104 18 C -0.142 4.142 19 C 0.353 3.647 20 O -0.465 6.465 21 C -0.088 4.088 22 C -0.033 4.033 23 H 0.263 0.737 24 H 0.124 0.876 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.796 -10.285 -0.046 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.050 3.950 10 H 0.062 0.938 11 C -0.155 4.155 12 C -0.240 4.240 13 S 0.069 5.931 14 C -0.192 4.192 15 C -0.130 4.130 16 C -0.141 4.141 17 C -0.107 4.107 18 C -0.180 4.180 19 C 0.209 3.791 20 O -0.336 6.336 21 C -0.108 4.108 22 C -0.039 4.039 23 H 0.073 0.927 24 H 0.141 0.859 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.601 -10.445 -0.713 11.435 hybrid contribution 0.489 1.705 0.812 1.950 sum 5.089 -8.740 0.099 10.114 Atomic orbital electron populations 1.69751 1.05905 1.26702 1.50442 1.24954 0.94931 0.99310 0.94662 0.86480 0.80334 0.83311 0.77735 1.19520 1.20841 1.20855 1.21282 0.93106 0.89429 1.51022 0.91720 1.17573 0.91621 0.90333 0.95523 0.93802 1.21844 0.99408 0.95146 0.99104 1.23949 0.98631 0.97345 1.04072 1.84850 1.11718 1.41151 1.55415 1.21353 0.98376 0.96768 1.02751 1.20719 0.93881 0.97868 1.00557 1.20653 0.97490 0.96719 0.99273 1.19313 0.95432 0.95195 1.00755 1.21384 0.94056 1.03519 0.99024 1.26008 0.79172 0.84748 0.89158 1.90406 1.48688 1.21898 1.72584 1.21475 0.92469 0.98525 0.98340 1.20417 0.96586 0.93104 0.93749 0.92699 0.85874 0.93019 0.90109 0.88807 0.86440 0.86271 0.88846 0.88016 0.89041 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 10.97 55.43 0.61 -23.10 16 2 C 0.06 1.64 5.27 -17.82 -0.09 1.55 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -13.19 7.67 -34.44 -0.26 -13.46 16 8 H 0.06 1.68 6.11 -52.49 -0.32 1.36 16 9 C 0.07 1.60 1.98 -93.81 -0.19 1.41 16 10 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 11 C -0.12 -2.60 4.82 -27.03 -0.13 -2.73 16 12 C -0.09 -1.73 6.52 37.43 0.24 -1.48 16 13 S -0.17 -3.14 21.99 -107.50 -2.36 -5.50 16 14 C -0.08 -1.54 6.05 -39.09 -0.24 -1.77 16 15 C -0.11 -1.73 9.65 -39.24 -0.38 -2.11 16 16 C -0.12 -1.72 9.72 -39.72 -0.39 -2.11 16 17 C -0.10 -1.62 5.10 -104.76 -0.53 -2.15 16 18 C -0.14 -1.76 5.92 -29.04 -0.17 -1.93 16 19 C 0.35 4.61 11.17 36.01 0.40 5.01 16 20 O -0.46 -8.03 17.90 6.00 0.11 -7.92 16 21 C -0.09 -1.72 8.25 -39.35 -0.32 -2.04 16 22 C -0.03 -0.70 5.53 -104.56 -0.58 -1.28 16 23 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 24 H 0.12 3.03 5.62 -51.93 -0.29 2.74 16 25 H 0.05 1.20 8.03 -51.93 -0.42 0.78 16 26 H 0.08 1.50 8.08 -51.93 -0.42 1.08 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.12 1.66 8.05 -52.49 -0.42 1.24 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.09 1.24 8.06 -51.93 -0.42 0.82 16 31 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 32 H 0.09 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.14 2.80 6.38 -52.48 -0.33 2.47 16 LS Contribution 288.50 15.07 4.35 4.35 Total: -1.00 -28.37 288.50 -8.83 -37.20 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.87 Total: 2.32 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -2.64 Total: -23.09 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.61 Total: -23.10 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.11 Total: -7.92 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.36 Total: -5.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.37 -8.83 -37.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.665 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds