Wall clock time and date at job start Mon Mar 30 2020 06:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99852 * 2 1 4 4 H 1.48508 * 109.46972 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47036 * 299.99526 * 3 2 1 6 6 H 1.48496 * 109.47635 * 59.99891 * 3 2 1 7 7 C 1.37877 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99796 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00162 * 0.02562 * 7 2 1 10 10 H 1.08994 * 108.51404 * 297.99455 * 9 7 2 11 11 C 1.51876 * 108.67089 * 56.00359 * 9 7 2 12 12 C 1.53521 * 108.97913 * 181.68937 * 11 9 7 13 13 S 1.81605 * 107.33516 * 287.46926 * 12 11 9 14 14 C 1.76452 * 102.63436 * 46.42456 * 13 12 11 15 15 C 1.39632 * 117.72288 * 167.15872 * 14 13 12 16 16 C 1.37745 * 120.61992 * 178.44567 * 15 14 13 17 17 C 1.38343 * 119.51574 * 0.12404 * 16 15 14 18 18 C 1.50697 * 119.99476 * 180.42994 * 17 16 15 19 19 C 1.50702 * 109.46970 * 90.00049 * 18 17 16 20 20 O 1.20761 * 119.99917 * 124.99709 * 19 18 17 21 21 C 1.37760 * 120.00857 * 0.41128 * 17 16 15 22 22 C 1.38171 * 122.30193 * 346.38437 * 14 13 12 23 23 H 0.96996 * 120.00008 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.55375 * 301.53398 * 11 9 7 25 25 H 1.08998 * 109.55877 * 61.83404 * 11 9 7 26 26 H 1.09000 * 109.88057 * 46.92963 * 12 11 9 27 27 H 1.09003 * 109.88183 * 167.93528 * 12 11 9 28 28 H 1.08001 * 119.69059 * 358.72485 * 15 14 13 29 29 H 1.07999 * 120.24284 * 180.10250 * 16 15 14 30 30 H 1.08993 * 109.47493 * 209.99984 * 18 17 16 31 31 H 1.09001 * 109.47031 * 330.00421 * 18 17 16 32 32 H 1.08004 * 120.00148 * 305.00428 * 19 18 17 33 33 H 1.08003 * 119.47349 * 179.74280 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6575 -2.5561 0.9129 11 6 0.3117 -2.5182 -1.1927 12 6 -0.4905 -3.8271 -1.1758 13 16 0.6452 -5.1639 -1.6462 14 6 2.0670 -4.8285 -0.6565 15 6 3.0427 -5.8229 -0.5630 16 6 4.1914 -5.6124 0.1674 17 6 4.3753 -4.4039 0.8152 18 6 5.6323 -4.1584 1.6093 19 6 6.6813 -3.5507 0.7141 20 8 7.2037 -2.5055 1.0193 21 6 3.4096 -3.4248 0.7341 22 6 2.2420 -3.6259 0.0011 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3715 -1.6709 -1.1328 25 1 0.8908 -2.4571 -2.1141 26 1 -0.8826 -4.0086 -0.1751 27 1 -1.3115 -3.7680 -1.8904 28 1 2.8974 -6.7644 -1.0720 29 1 4.9429 -6.3852 0.2342 30 1 5.4157 -3.4755 2.4306 31 1 5.9995 -5.1034 2.0096 32 1 6.9659 -4.0498 -0.2004 33 1 3.5602 -2.4861 1.2467 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267902.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:03 Heat of formation + Delta-G solvation = -38.234748 kcal Electronic energy + Delta-G solvation = -17198.652821 eV Core-core repulsion = 14507.259802 eV Total energy + Delta-G solvation = -2691.393018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72466 -39.77840 -37.19698 -34.24470 -33.39954 -31.92581 -28.91650 -28.82901 -25.50026 -23.74887 -23.42094 -22.25464 -20.70189 -18.65383 -18.29157 -17.39199 -16.78337 -16.36585 -16.13508 -16.00129 -15.85632 -15.07022 -14.72442 -14.64180 -14.35784 -13.73538 -13.58443 -13.49489 -13.23286 -12.90228 -12.85025 -12.61054 -12.19768 -12.07048 -12.00809 -11.44683 -11.16096 -11.03252 -10.76562 -10.47223 -10.11723 -9.49225 -8.19868 -8.16765 -6.31913 0.29630 0.59139 0.84253 1.09493 1.33016 1.37036 1.47383 1.53752 2.35081 2.80250 3.08485 3.58052 3.87069 4.00866 4.10089 4.15225 4.22953 4.36433 4.53449 4.55134 4.62005 4.81833 4.88064 4.94745 5.09446 5.12941 5.30502 5.42930 5.50599 5.57323 5.70438 5.73935 6.03824 6.17496 6.28682 6.46980 6.74456 7.36176 8.84636 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.010125 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.917078 B = 2764.660452 C = 4759.201906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.071 3.929 10 H 0.007 0.993 11 C -0.107 4.107 12 C -0.091 4.091 13 S -0.146 6.146 14 C -0.103 4.103 15 C -0.105 4.105 16 C -0.097 4.097 17 C -0.091 4.091 18 C -0.139 4.139 19 C 0.360 3.640 20 O -0.515 6.515 21 C -0.114 4.114 22 C -0.069 4.069 23 H 0.264 0.736 24 H 0.097 0.903 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.176 0.824 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.600 -13.018 -0.601 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.053 3.947 10 H 0.024 0.976 11 C -0.146 4.146 12 C -0.239 4.239 13 S 0.096 5.904 14 C -0.216 4.216 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.176 4.176 19 C 0.219 3.781 20 O -0.389 6.389 21 C -0.134 4.134 22 C -0.074 4.074 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.055 0.945 26 H 0.096 0.904 27 H 0.135 0.865 28 H 0.164 0.836 29 H 0.193 0.807 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.397 -13.191 -1.268 14.715 hybrid contribution -0.013 2.455 1.016 2.657 sum 6.385 -10.736 -0.252 12.493 Atomic orbital electron populations 1.69871 1.06746 1.27232 1.51071 1.25605 0.95690 1.01913 0.94722 0.85646 0.78808 0.80230 0.77891 1.20081 1.20214 1.20409 1.21535 0.92877 0.90961 1.50637 0.92733 1.17393 0.91995 0.91048 0.94245 0.97573 1.21571 0.98870 0.96430 0.97764 1.23814 0.99216 0.96052 1.04812 1.84609 1.10926 1.39606 1.55254 1.21618 0.99838 0.96921 1.03184 1.21146 0.93436 0.97882 1.00362 1.21222 0.97479 0.96727 0.96220 1.19536 0.95165 0.94600 1.00092 1.21450 0.92560 1.05519 0.98101 1.26598 0.78027 0.83617 0.89831 1.90412 1.50741 1.24091 1.73671 1.21366 0.93787 0.98946 0.99293 1.20179 0.96994 0.93551 0.96661 0.92643 0.88475 0.94476 0.90390 0.86548 0.83607 0.80668 0.90567 0.83214 0.84826 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.65 10.97 21.45 0.24 -50.41 16 2 C 0.02 1.08 5.27 84.65 0.45 1.53 16 3 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.52 -28.50 7.67 25.60 0.20 -28.30 16 8 H 0.05 3.01 6.11 -2.91 -0.02 2.99 16 9 C 0.07 3.58 1.98 -12.86 -0.03 3.55 16 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 11 C -0.11 -5.03 4.82 30.40 0.15 -4.89 16 12 C -0.09 -3.45 6.52 72.16 0.47 -2.98 16 13 S -0.15 -5.08 21.99 -56.49 -1.24 -6.32 16 14 C -0.10 -3.83 6.05 22.59 0.14 -3.69 16 15 C -0.11 -2.97 9.65 22.49 0.22 -2.76 16 16 C -0.10 -2.24 9.72 22.18 0.22 -2.02 16 17 C -0.09 -2.58 5.10 -19.95 -0.10 -2.68 16 18 C -0.14 -2.99 5.92 29.10 0.17 -2.81 16 19 C 0.36 8.34 11.17 71.24 0.80 9.13 16 20 O -0.51 -17.32 17.90 -1.45 -0.03 -17.35 16 21 C -0.11 -4.51 8.25 22.42 0.19 -4.32 16 22 C -0.07 -2.96 5.53 -19.82 -0.11 -3.07 16 23 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 24 H 0.10 5.06 5.62 -2.39 -0.01 5.04 16 25 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 26 H 0.08 2.98 8.08 -2.39 -0.02 2.96 16 27 H 0.12 3.82 8.14 -2.39 -0.02 3.80 16 28 H 0.15 3.32 8.05 -2.91 -0.02 3.30 16 29 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.08 1.94 8.06 -2.39 -0.02 1.92 16 31 H 0.15 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 33 H 0.10 4.66 6.38 -2.91 -0.02 4.64 16 Total: -1.00 -66.23 288.50 4.85 -61.38 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.11 Total: 9.94 kcal Atomic # 6 Polarization: -46.07 SS G_CDS: 2.75 Total: -43.32 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.24 Total: -50.41 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.03 Total: -17.35 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.24 Total: -6.32 kcal Total: -66.23 4.85 -61.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267902.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.146 kcal (2) G-P(sol) polarization free energy of solvation -66.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds