Wall clock time and date at job start Mon Mar 30 2020 06:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00259 * 2 1 4 4 H 1.48495 * 109.47093 * 239.99754 * 3 2 1 5 5 H 1.48504 * 109.47192 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47184 * 119.99875 * 3 2 1 7 7 C 1.37879 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00272 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00033 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47393 * 299.99807 * 9 7 2 11 11 C 1.53002 * 109.46861 * 59.99972 * 9 7 2 12 12 F 1.39898 * 109.47049 * 299.99904 * 11 9 7 13 13 C 1.50701 * 109.47189 * 179.97438 * 9 7 2 14 14 C 1.38255 * 119.99838 * 300.00268 * 13 9 7 15 15 C 1.38220 * 119.99681 * 179.97438 * 14 13 9 16 16 C 1.38253 * 120.00046 * 0.05260 * 15 14 13 17 17 C 1.38205 * 119.99884 * 359.94758 * 16 15 14 18 18 C 1.50709 * 119.99867 * 180.02562 * 17 16 15 19 19 F 1.39904 * 109.46572 * 270.02093 * 18 17 16 20 20 F 1.39898 * 109.47232 * 30.01934 * 18 17 16 21 21 F 1.39899 * 109.47199 * 150.02166 * 18 17 16 22 22 C 1.38208 * 119.99804 * 120.02140 * 13 9 7 23 23 H 0.97000 * 119.99526 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47251 * 59.99749 * 11 9 7 25 25 H 1.08997 * 109.47163 * 179.97438 * 11 9 7 26 26 H 1.08000 * 120.00604 * 359.72524 * 14 13 9 27 27 H 1.08002 * 119.99604 * 180.02562 * 15 14 13 28 28 H 1.08005 * 119.99964 * 179.97438 * 16 15 14 29 29 H 1.07992 * 120.00457 * 0.02562 * 22 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5568 0.8903 11 6 0.3717 -2.5804 -1.2491 12 9 -0.5373 -1.5170 -1.2496 13 6 2.2301 -3.6447 0.0005 14 6 3.1344 -3.7811 -1.0364 15 6 4.0328 -4.8314 -1.0361 16 6 4.0265 -5.7462 0.0005 17 6 3.1226 -5.6098 1.0370 18 6 3.1161 -6.6067 2.1673 19 9 2.2461 -7.6575 1.8571 20 9 4.4081 -7.1101 2.3525 21 9 2.6879 -5.9778 3.3413 22 6 2.2239 -4.5591 1.0369 23 1 -0.4849 0.8401 -0.0004 24 1 0.9987 -2.5228 -2.1388 25 1 -0.1730 -3.5245 -1.2493 26 1 3.1361 -3.0693 -1.8486 27 1 4.7395 -4.9377 -1.8459 28 1 4.7283 -6.5672 0.0005 29 1 1.5171 -4.4530 1.8465 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261356501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:11 Heat of formation + Delta-G solvation = -165.523967 kcal Electronic energy + Delta-G solvation = -19598.488725 eV Core-core repulsion = 15793.506116 eV Total energy + Delta-G solvation = -3804.982609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.98505 -47.50523 -47.44818 -45.59551 -39.08304 -34.24643 -31.85834 -31.28563 -28.34403 -25.72582 -24.78410 -22.61896 -21.96911 -20.14306 -18.32234 -18.16795 -17.66475 -16.37083 -15.84410 -15.00206 -14.87645 -14.40510 -14.30675 -14.00932 -13.92592 -13.91176 -13.73569 -13.62153 -13.57590 -13.26974 -12.46734 -12.26592 -12.20863 -11.87539 -11.25721 -10.91560 -10.78134 -10.62062 -10.14389 -9.73928 -9.47681 -9.07623 -8.79746 -8.36227 -8.12602 -5.89301 -4.07379 1.35242 1.71024 2.87195 3.29976 3.35456 3.37178 3.92443 3.95366 4.24573 4.41006 4.64670 5.16850 5.19113 5.26512 5.58297 5.71612 5.81956 6.01513 6.14803 6.30115 6.32598 6.49556 6.63859 6.75819 6.89306 7.13595 7.40556 7.62596 7.87362 8.17631 8.85819 9.52876 11.00391 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.005656 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.390082 B = 4949.233089 C = 5033.990256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.047 3.953 10 H 0.045 0.955 11 C 0.084 3.916 12 F -0.170 7.170 13 C -0.034 4.034 14 C -0.080 4.080 15 C -0.126 4.126 16 C -0.097 4.097 17 C -0.189 4.189 18 C 0.509 3.491 19 F -0.182 7.182 20 F -0.183 7.183 21 F -0.178 7.178 22 C -0.078 4.078 23 H 0.257 0.743 24 H 0.041 0.959 25 H 0.021 0.979 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.485 -11.018 -0.211 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.028 3.972 10 H 0.063 0.937 11 C 0.028 3.972 12 F -0.151 7.151 13 C -0.034 4.034 14 C -0.098 4.098 15 C -0.144 4.144 16 C -0.115 4.115 17 C -0.190 4.190 18 C 0.455 3.545 19 F -0.163 7.163 20 F -0.164 7.164 21 F -0.159 7.159 22 C -0.096 4.096 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.151 0.849 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.265 -10.887 -0.173 12.094 hybrid contribution 0.504 0.734 0.252 0.925 sum 5.769 -10.153 0.079 11.678 Atomic orbital electron populations 1.70564 1.05469 1.25800 1.45406 1.25040 0.94935 0.99155 0.94965 0.86644 0.79533 0.83091 0.78598 1.20293 1.21281 1.20268 1.20746 0.92693 0.88879 1.55368 0.92255 1.18523 0.92028 0.90905 0.95697 0.93705 1.22063 0.89824 0.85997 0.99313 1.92990 1.68025 1.56723 1.97336 1.20446 0.96369 0.94590 0.92020 1.21392 0.93422 0.96305 0.98642 1.21090 0.99749 0.95195 0.98358 1.20690 0.97645 0.99726 0.93466 1.19854 1.03652 0.98660 0.96815 1.18428 0.73236 0.80339 0.82511 1.93197 1.70180 1.59957 1.92972 1.93152 1.38873 1.88601 1.95786 1.93186 1.89845 1.82100 1.50799 1.20934 0.97167 0.92483 0.99040 0.93271 0.94083 0.96123 0.84918 0.85640 0.85765 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.53 9.50 55.43 0.53 -23.00 15 2 C 0.07 1.76 5.20 -17.82 -0.09 1.67 15 3 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.54 -14.00 8.24 -34.44 -0.28 -14.29 15 8 H 0.06 1.53 7.60 -52.48 -0.40 1.13 15 9 C 0.05 1.10 2.44 -92.92 -0.23 0.87 15 10 H 0.04 1.14 7.88 -51.93 -0.41 0.73 15 11 C 0.08 1.89 6.75 37.16 0.25 2.14 15 12 F -0.17 -4.50 12.95 2.25 0.03 -4.47 15 13 C -0.03 -0.66 4.73 -104.63 -0.50 -1.16 15 14 C -0.08 -1.37 8.71 -39.58 -0.34 -1.71 15 15 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 15 16 C -0.10 -1.39 9.40 -39.59 -0.37 -1.77 15 17 C -0.19 -3.00 5.45 -104.62 -0.57 -3.57 15 18 C 0.51 7.55 3.36 36.01 0.12 7.67 15 19 F -0.18 -2.67 17.30 2.25 0.04 -2.63 15 20 F -0.18 -2.58 16.46 2.25 0.04 -2.54 15 21 F -0.18 -2.76 16.46 2.25 0.04 -2.73 15 22 C -0.08 -1.40 9.02 -39.58 -0.36 -1.76 15 23 H 0.26 6.96 8.31 -40.82 -0.34 6.63 15 24 H 0.04 0.86 7.38 -51.93 -0.38 0.48 15 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 15 26 H 0.13 2.24 7.57 -52.49 -0.40 1.85 15 27 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.12 1.48 7.60 -52.48 -0.40 1.08 15 29 H 0.13 2.27 7.49 -52.49 -0.39 1.87 15 LS Contribution 266.94 15.07 4.02 4.02 Total: -1.00 -27.71 266.94 -5.46 -33.17 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -2.36 Total: -3.54 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -2.77 Total: -14.10 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.53 Total: -23.00 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 0.14 Total: -12.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.71 -5.46 -33.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261356501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.353 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds