Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35903 * 117.00017 * 2 1 4 4 C 1.38171 * 119.90293 * 179.97438 * 3 2 1 5 5 C 1.40638 * 119.80206 * 179.97438 * 4 3 2 6 6 C 1.41415 * 120.19147 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00569 * 204.54631 * 6 5 4 8 8 C 1.39922 * 119.99588 * 24.55010 * 6 5 4 9 9 N 1.30836 * 120.00422 * 17.92920 * 8 6 5 10 10 Si 1.86807 * 120.00015 * 197.93088 * 8 6 5 11 11 H 1.48495 * 109.47072 * 90.00199 * 10 8 6 12 12 H 1.48504 * 109.47001 * 210.00069 * 10 8 6 13 13 H 1.48498 * 109.46926 * 329.99894 * 10 8 6 14 14 C 1.40673 * 119.62295 * 0.02562 * 5 4 3 15 15 C 1.38140 * 119.80091 * 359.97438 * 14 5 4 16 16 O 1.35890 * 119.90626 * 180.02562 * 15 14 5 17 17 C 1.42907 * 117.00299 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.46814 * 60.00538 * 17 16 15 19 19 F 1.39894 * 109.47005 * 180.02562 * 17 16 15 20 20 F 1.39900 * 109.47153 * 300.00485 * 17 16 15 21 21 C 1.39019 * 119.89999 * 0.02562 * 3 2 1 22 22 H 1.08994 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47217 * 300.00104 * 1 2 3 24 24 H 1.09000 * 109.46990 * 59.99741 * 1 2 3 25 25 H 1.07997 * 120.09919 * 0.28350 * 4 3 2 26 26 H 0.96999 * 120.00224 * 180.02562 * 9 8 6 27 27 H 1.08000 * 120.10299 * 179.97438 * 14 5 4 28 28 H 1.07992 * 119.80858 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4260 1.2809 0.0005 5 6 4.0623 2.5351 0.0000 6 6 5.4741 2.6163 0.0011 7 1 5.9641 3.4969 0.3892 8 6 6.2362 1.5556 -0.5009 9 7 5.6807 0.6608 -1.2772 10 14 8.0468 1.4169 -0.0626 11 1 8.1960 0.6115 1.1759 12 1 8.7759 0.7552 -1.1743 13 1 8.6078 2.7739 0.1587 14 6 3.2863 3.7084 -0.0006 15 6 1.9077 3.6199 -0.0011 16 8 1.1561 4.7519 -0.0021 17 6 -0.2636 4.5882 -0.0032 18 9 -0.6521 3.8801 1.1391 19 9 -0.8780 5.8450 -0.0048 20 9 -0.6504 3.8790 -1.1454 21 6 1.2869 2.3755 0.0005 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 4.0142 0.3752 -0.0037 26 1 6.2089 -0.0747 -1.6249 27 1 3.7668 4.6757 -0.0006 28 1 0.2087 2.3135 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309154422.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -220.175403 kcal Electronic energy + Delta-G solvation = -19946.929617 eV Core-core repulsion = 16127.204354 eV Total energy + Delta-G solvation = -3819.725263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02125 -47.78698 -47.57970 -39.32622 -38.08207 -35.98386 -33.37296 -29.61320 -29.07983 -26.84639 -25.34366 -25.09307 -21.59689 -21.00214 -19.28429 -18.71046 -18.52529 -17.32786 -16.22806 -15.28190 -15.05955 -14.99208 -14.92446 -14.60071 -14.49664 -14.27927 -14.07708 -13.85823 -13.65983 -13.55428 -13.36591 -12.99618 -12.25954 -11.81018 -11.34941 -11.28346 -11.20987 -10.87558 -10.57843 -10.07398 -9.99752 -9.89235 -9.17782 -7.61271 -7.07826 -6.87031 -4.61401 2.10909 2.54715 2.76161 3.00975 3.04792 3.08737 3.38562 3.82329 4.17536 4.31034 4.34374 4.50369 5.42267 5.60438 5.68358 5.82532 5.87464 6.03424 6.46617 6.67294 6.88935 7.02778 7.26692 7.30371 7.62600 7.82206 7.86844 8.20744 8.57966 8.67558 8.70905 10.00098 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.006340 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.041399 B = 4415.126450 C = 5188.085969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.323 6.323 3 C 0.163 3.837 4 C -0.209 4.209 5 C 0.158 3.842 6 C -0.448 4.448 7 H 0.087 0.913 8 C 0.076 3.924 9 N -0.775 5.775 10 Si 0.915 3.085 11 H -0.265 1.265 12 H -0.276 1.276 13 H -0.260 1.260 14 C -0.248 4.248 15 C 0.147 3.853 16 O -0.316 6.316 17 C 0.601 3.399 18 F -0.171 7.171 19 F -0.146 7.146 20 F -0.171 7.171 21 C -0.388 4.388 22 H 0.086 0.914 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.132 0.868 26 H 0.286 0.714 27 H 0.110 0.890 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.082 1.868 1.588 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.237 6.237 3 C 0.119 3.881 4 C -0.229 4.229 5 C 0.155 3.845 6 C -0.476 4.476 7 H 0.105 0.895 8 C -0.145 4.145 9 N -0.398 5.398 10 Si 0.739 3.261 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.184 1.184 14 C -0.268 4.268 15 C 0.106 3.894 16 O -0.237 6.237 17 C 0.510 3.490 18 F -0.153 7.153 19 F -0.128 7.128 20 F -0.153 7.153 21 C -0.408 4.408 22 H 0.105 0.895 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.150 0.850 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.917 1.646 1.428 7.252 hybrid contribution 0.006 -0.011 0.038 0.040 sum -6.911 1.635 1.466 7.252 Atomic orbital electron populations 1.22807 0.80514 1.02156 1.00680 1.86033 1.19701 1.28423 1.89542 1.18536 0.92066 0.82030 0.95483 1.20642 0.89210 0.99445 1.13634 1.17042 0.92889 0.88819 0.85793 1.19604 0.90445 1.02520 1.35022 0.89497 1.26006 1.01740 0.94339 0.92423 1.69841 1.38918 1.10414 1.20625 0.86197 0.80921 0.79827 0.79196 1.19003 1.20123 1.18358 1.20261 0.87955 0.99016 1.19536 1.18244 0.89822 0.81377 1.00002 1.86369 1.12798 1.34889 1.89622 1.19409 0.81383 0.73644 0.74562 1.93254 1.91458 1.78866 1.51761 1.93230 1.81762 1.41394 1.96412 1.93259 1.91498 1.78804 1.51731 1.20648 0.98263 0.91828 1.30054 0.89548 0.93596 0.93544 0.85040 0.90327 0.87190 0.87182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.81 101.05 0.99 1.56 15 2 O -0.32 -7.08 10.49 -19.44 -0.20 -7.28 15 3 C 0.16 3.95 6.67 -39.32 -0.26 3.69 15 4 C -0.21 -5.45 8.64 -38.70 -0.33 -5.78 15 5 C 0.16 4.10 5.57 -106.86 -0.60 3.51 15 6 C -0.45 -11.29 9.05 -37.74 -0.34 -11.63 15 7 H 0.09 2.07 7.91 -52.49 -0.42 1.66 15 8 C 0.08 1.80 5.14 -17.35 -0.09 1.71 15 9 N -0.77 -19.27 10.96 55.55 0.61 -18.66 15 10 Si 0.91 17.68 29.60 -169.99 -5.03 12.65 15 11 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 12 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 13 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 14 C -0.25 -6.05 9.72 -38.70 -0.38 -6.43 15 15 C 0.15 3.39 6.47 -39.31 -0.25 3.14 15 16 O -0.32 -6.52 10.37 -19.39 -0.20 -6.72 15 17 C 0.60 10.56 3.42 101.05 0.35 10.91 15 18 F -0.17 -2.96 15.55 2.25 0.04 -2.93 15 19 F -0.15 -2.26 17.53 2.25 0.04 -2.22 15 20 F -0.17 -3.00 15.55 2.25 0.04 -2.97 15 21 C -0.39 -8.83 7.26 -38.99 -0.28 -9.12 15 22 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.05 0.72 7.65 -51.93 -0.40 0.32 15 24 H 0.05 0.75 7.65 -51.93 -0.40 0.35 15 25 H 0.13 3.55 6.15 -52.49 -0.32 3.23 15 26 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 27 H 0.11 2.53 8.06 -52.49 -0.42 2.10 15 28 H 0.11 2.27 3.27 -52.49 -0.17 2.10 15 LS Contribution 260.23 15.07 3.92 3.92 Total: -1.00 -26.50 260.23 -3.68 -30.18 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -1.68 Total: 2.48 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -1.20 Total: -8.45 kcal Atomic # 7 Polarization: -19.27 SS G_CDS: 0.61 Total: -18.66 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.40 Total: -14.01 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 0.11 Total: -8.12 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.50 -3.68 -30.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309154422.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.000 kcal (2) G-P(sol) polarization free energy of solvation -26.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds