Wall clock time and date at job start Mon Mar 30 2020 06:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35903 * 117.00017 * 2 1 4 4 C 1.38171 * 119.90293 * 179.97438 * 3 2 1 5 5 C 1.40638 * 119.80206 * 179.97438 * 4 3 2 6 6 C 1.41415 * 120.19147 * 179.97438 * 5 4 3 7 7 H 1.07996 * 120.00569 * 204.54631 * 6 5 4 8 8 C 1.39922 * 119.99588 * 24.55010 * 6 5 4 9 9 N 1.30836 * 120.00422 * 17.92920 * 8 6 5 10 10 Si 1.86807 * 120.00015 * 197.93088 * 8 6 5 11 11 H 1.48495 * 109.47072 * 90.00199 * 10 8 6 12 12 H 1.48504 * 109.47001 * 210.00069 * 10 8 6 13 13 H 1.48498 * 109.46926 * 329.99894 * 10 8 6 14 14 C 1.40673 * 119.62295 * 0.02562 * 5 4 3 15 15 C 1.38140 * 119.80091 * 359.97438 * 14 5 4 16 16 O 1.35890 * 119.90626 * 180.02562 * 15 14 5 17 17 C 1.42907 * 117.00299 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.46814 * 60.00538 * 17 16 15 19 19 F 1.39894 * 109.47005 * 180.02562 * 17 16 15 20 20 F 1.39900 * 109.47153 * 300.00485 * 17 16 15 21 21 C 1.39019 * 119.89999 * 0.02562 * 3 2 1 22 22 H 1.08994 * 109.46903 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47217 * 300.00104 * 1 2 3 24 24 H 1.09000 * 109.46990 * 59.99741 * 1 2 3 25 25 H 1.07997 * 120.09919 * 0.28350 * 4 3 2 26 26 H 0.96999 * 120.00224 * 180.02562 * 9 8 6 27 27 H 1.08000 * 120.10299 * 179.97438 * 14 5 4 28 28 H 1.07992 * 119.80858 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4260 1.2809 0.0005 5 6 4.0623 2.5351 0.0000 6 6 5.4741 2.6163 0.0011 7 1 5.9641 3.4969 0.3892 8 6 6.2362 1.5556 -0.5009 9 7 5.6807 0.6608 -1.2772 10 14 8.0468 1.4169 -0.0626 11 1 8.1960 0.6115 1.1759 12 1 8.7759 0.7552 -1.1743 13 1 8.6078 2.7739 0.1587 14 6 3.2863 3.7084 -0.0006 15 6 1.9077 3.6199 -0.0011 16 8 1.1561 4.7519 -0.0021 17 6 -0.2636 4.5882 -0.0032 18 9 -0.6521 3.8801 1.1391 19 9 -0.8780 5.8450 -0.0048 20 9 -0.6504 3.8790 -1.1454 21 6 1.2869 2.3755 0.0005 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 4.0142 0.3752 -0.0037 26 1 6.2089 -0.0747 -1.6249 27 1 3.7668 4.6757 -0.0006 28 1 0.2087 2.3135 0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309154422.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:10 Heat of formation + Delta-G solvation = -235.470488 kcal Electronic energy + Delta-G solvation = -19947.592862 eV Core-core repulsion = 16127.204354 eV Total energy + Delta-G solvation = -3820.388508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.42834 -49.15035 -49.00562 -41.06878 -39.75283 -37.76660 -35.18504 -31.45947 -30.82497 -28.40339 -27.10971 -26.62025 -23.35144 -22.76099 -20.94687 -20.14177 -20.01015 -19.00847 -18.00284 -17.01721 -16.75758 -16.57406 -16.51642 -16.12309 -16.04061 -15.77261 -15.46207 -15.33293 -15.17951 -15.07796 -14.89519 -14.62840 -13.91729 -13.52936 -12.98834 -12.86395 -12.77509 -12.62492 -12.17961 -11.86360 -11.74090 -11.60791 -10.95333 -9.47935 -8.91216 -8.68384 -6.52867 0.59595 0.73282 0.89346 1.42419 1.52630 1.56992 1.86409 2.20542 2.55344 2.62886 2.87752 2.99980 3.53687 4.09209 4.19238 4.37831 4.38265 4.62166 4.66595 4.84383 5.05683 5.16620 5.43169 5.46375 5.74895 5.95755 6.02921 6.35010 6.73709 6.80041 6.86114 8.23359 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.027336 B = 0.006340 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.041399 B = 4415.126450 C = 5188.085969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C 0.163 3.837 4 C -0.240 4.240 5 C 0.136 3.864 6 C -0.477 4.477 7 H 0.092 0.908 8 C 0.037 3.963 9 N -0.807 5.807 10 Si 0.990 3.010 11 H -0.261 1.261 12 H -0.267 1.267 13 H -0.253 1.253 14 C -0.268 4.268 15 C 0.153 3.847 16 O -0.323 6.323 17 C 0.607 3.393 18 F -0.167 7.167 19 F -0.129 7.129 20 F -0.168 7.168 21 C -0.387 4.387 22 H 0.124 0.876 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.113 0.887 26 H 0.294 0.706 27 H 0.116 0.884 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 1.913 1.804 7.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C 0.118 3.882 4 C -0.261 4.261 5 C 0.133 3.867 6 C -0.504 4.504 7 H 0.110 0.890 8 C -0.181 4.181 9 N -0.431 5.431 10 Si 0.810 3.190 11 H -0.186 1.186 12 H -0.192 1.192 13 H -0.176 1.176 14 C -0.288 4.288 15 C 0.111 3.889 16 O -0.243 6.243 17 C 0.516 3.484 18 F -0.149 7.149 19 F -0.111 7.111 20 F -0.150 7.150 21 C -0.407 4.407 22 H 0.142 0.858 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.131 0.869 26 H 0.105 0.895 27 H 0.134 0.866 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.413 1.699 1.641 7.781 hybrid contribution -0.032 -0.022 -0.047 0.061 sum -7.446 1.677 1.594 7.797 Atomic orbital electron populations 1.23199 0.77538 1.05002 1.01308 1.86010 1.22754 1.27434 1.89168 1.18620 0.91845 0.83313 0.94407 1.20585 0.90278 0.98897 1.16293 1.17358 0.93785 0.89401 0.86197 1.19927 0.90747 1.03703 1.36054 0.89006 1.26911 1.06324 0.93335 0.91548 1.69894 1.40968 1.11002 1.21188 0.85074 0.74878 0.80043 0.79008 1.18596 1.19151 1.17638 1.20369 0.88898 0.98899 1.20663 1.18224 0.89829 0.82159 0.98697 1.86324 1.14544 1.33979 1.89450 1.19258 0.80169 0.74331 0.74641 1.93264 1.91221 1.78850 1.51539 1.93275 1.81123 1.40347 1.96342 1.93266 1.91283 1.78839 1.51651 1.20844 0.99301 0.91189 1.29412 0.85790 0.92674 0.93030 0.86895 0.89518 0.86578 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.74 9.81 113.37 1.11 1.85 15 2 O -0.34 -14.66 10.49 -92.46 -0.97 -15.63 15 3 C 0.16 7.93 6.67 22.44 0.15 8.08 15 4 C -0.24 -12.89 8.64 22.84 0.20 -12.69 15 5 C 0.14 7.25 5.57 -21.32 -0.12 7.13 15 6 C -0.48 -24.57 9.05 23.46 0.21 -24.36 15 7 H 0.09 4.46 7.91 -2.91 -0.02 4.43 15 8 C 0.04 1.77 5.14 85.25 0.44 2.21 15 9 N -0.81 -40.92 10.96 21.82 0.24 -40.68 15 10 Si 0.99 36.04 29.60 68.60 2.03 38.07 15 11 H -0.26 -9.30 7.11 99.48 0.71 -8.59 15 12 H -0.27 -9.25 7.11 99.48 0.71 -8.54 15 13 H -0.25 -8.85 7.11 99.48 0.71 -8.15 15 14 C -0.27 -13.31 9.72 22.84 0.22 -13.08 15 15 C 0.15 7.00 6.47 22.45 0.15 7.14 15 16 O -0.32 -12.87 10.37 -92.31 -0.96 -13.83 15 17 C 0.61 20.00 3.42 113.37 0.39 20.39 15 18 F -0.17 -5.37 15.55 44.97 0.70 -4.67 15 19 F -0.13 -3.68 17.53 44.97 0.79 -2.90 15 20 F -0.17 -5.54 15.55 44.97 0.70 -4.84 15 21 C -0.39 -17.31 7.26 22.66 0.16 -17.15 15 22 H 0.12 2.84 8.14 -2.39 -0.02 2.82 15 23 H 0.05 1.59 7.65 -2.39 -0.02 1.57 15 24 H 0.05 1.53 7.65 -2.39 -0.02 1.51 15 25 H 0.11 6.36 6.15 -2.91 -0.02 6.35 15 26 H 0.29 13.36 8.30 -92.71 -0.77 12.59 15 27 H 0.12 5.43 8.06 -2.91 -0.02 5.40 15 28 H 0.13 5.18 3.27 -2.91 -0.01 5.18 15 Total: -1.00 -57.01 260.23 6.66 -50.35 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.22 Total: 14.58 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 2.91 Total: -20.47 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.24 Total: -40.68 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.93 Total: -29.46 kcal Atomic # 9 Polarization: -14.59 SS G_CDS: 2.19 Total: -12.40 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -57.01 6.66 -50.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309154422.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.118 kcal (2) G-P(sol) polarization free energy of solvation -57.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds