Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46749 * 299.99988 * 3 2 1 6 6 H 1.48492 * 109.46912 * 59.99609 * 3 2 1 7 7 C 1.37871 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00258 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.47055 * 59.99669 * 9 7 2 11 11 N 1.46902 * 109.46793 * 300.00084 * 9 7 2 12 12 C 1.50696 * 109.47404 * 179.97438 * 9 7 2 13 13 C 1.36540 * 120.91297 * 100.02199 * 12 9 7 14 14 C 1.39463 * 119.92276 * 179.97438 * 13 12 9 15 15 Cl 1.73597 * 119.14328 * 180.02562 * 14 13 12 16 16 N 1.31226 * 121.71394 * 359.46746 * 14 13 12 17 17 C 1.33685 * 121.30234 * 0.81269 * 16 14 13 18 18 C 1.40586 * 121.06567 * 179.20195 * 17 16 14 19 19 C 1.36088 * 119.74837 * 180.02562 * 18 17 16 20 20 C 1.39352 * 121.06629 * 359.97438 * 19 18 17 21 21 C 1.36151 * 120.86398 * 0.02562 * 20 19 18 22 22 C 1.40414 * 119.61679 * 0.25253 * 21 20 19 23 23 H 0.97000 * 119.99514 * 0.02562 * 1 2 3 24 24 H 1.00906 * 110.99995 * 176.04227 * 11 9 7 25 25 H 1.00897 * 111.00064 * 299.99388 * 11 9 7 26 26 H 1.08004 * 120.03711 * 359.97438 * 13 12 9 27 27 H 1.08003 * 120.13183 * 359.97438 * 18 17 16 28 28 H 1.08000 * 119.46662 * 180.02562 * 19 18 17 29 29 H 1.08003 * 119.56730 * 180.02562 * 20 19 18 30 30 H 1.08002 * 120.18664 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4061 -2.5766 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5312 -4.3102 1.1541 14 6 3.4402 -5.3677 1.1303 15 17 3.8074 -6.2003 2.6086 16 7 4.0169 -5.7567 0.0176 17 6 3.7695 -5.1433 -1.1442 18 6 4.4027 -5.5536 -2.3304 19 6 4.1314 -4.9097 -3.4983 20 6 3.2322 -3.8459 -3.5408 21 6 2.5998 -3.4204 -2.4127 22 6 2.8601 -4.0577 -1.1889 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1579 -3.4133 1.1912 25 1 0.9638 -2.5251 2.0390 26 1 2.0659 -4.0181 2.0839 27 1 5.1026 -6.3760 -2.3149 28 1 4.6201 -5.2289 -4.4069 29 1 3.0345 -3.3525 -4.4810 30 1 1.9053 -2.5946 -2.4582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309231466.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = 46.993169 kcal Electronic energy + Delta-G solvation = -16922.114735 eV Core-core repulsion = 14128.833426 eV Total energy + Delta-G solvation = -2793.281308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.57298 -37.15615 -36.21639 -35.43493 -32.45615 -31.13600 -30.05955 -29.27275 -26.42177 -24.08497 -23.26335 -22.40292 -20.07045 -17.84397 -17.13511 -16.61648 -16.36262 -14.78189 -14.57733 -14.38757 -14.12761 -14.08920 -13.66296 -13.30724 -12.74123 -12.40419 -12.28038 -11.67626 -11.28766 -11.06088 -11.04410 -10.96570 -10.83617 -10.77229 -10.26207 -9.95797 -9.23396 -9.17529 -8.59705 -8.38142 -7.81358 -7.36216 -6.05704 -4.22918 0.73716 1.07868 2.01949 2.37860 3.16514 3.23515 3.32960 3.37108 4.32080 4.44522 4.67875 4.98356 5.12801 5.18647 5.27214 5.32514 5.51140 5.58864 5.77812 6.07388 6.13449 6.22688 6.34484 6.41355 6.63543 6.83596 6.88705 7.12867 7.18355 7.72716 7.91508 8.00658 8.39661 8.77300 8.92077 9.47378 10.98177 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.007866 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.426180 B = 3558.970297 C = 4658.657881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.088 3.912 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.534 4.534 8 H 0.056 0.944 9 C 0.253 3.747 10 H 0.061 0.939 11 N -0.808 5.808 12 C 0.012 3.988 13 C -0.197 4.197 14 C 0.220 3.780 15 Cl -0.048 7.048 16 N -0.497 5.497 17 C 0.142 3.858 18 C -0.111 4.111 19 C -0.094 4.094 20 C -0.141 4.141 21 C -0.057 4.057 22 C -0.101 4.101 23 H 0.258 0.742 24 H 0.302 0.698 25 H 0.322 0.678 26 H 0.140 0.860 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.754 -8.748 -2.771 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.120 4.120 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.143 3.857 10 H 0.079 0.921 11 N -0.335 5.335 12 C 0.002 3.998 13 C -0.218 4.218 14 C 0.042 3.958 15 Cl -0.020 7.020 16 N -0.209 5.209 17 C 0.021 3.979 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.159 4.159 21 C -0.075 4.075 22 C -0.104 4.104 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.157 0.843 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.856 -8.722 -2.986 10.419 hybrid contribution 0.640 0.568 0.525 1.004 sum 5.497 -8.153 -2.461 10.136 Atomic orbital electron populations 1.70101 1.05669 1.26052 1.45704 1.24911 0.94681 0.98625 0.93823 0.86639 0.80297 0.83919 0.77731 1.19784 1.20870 1.20851 1.20705 0.92246 0.88635 1.55657 0.92608 1.18394 0.87289 0.88228 0.91796 0.92127 1.59134 1.27756 1.42296 1.04280 1.22376 0.93574 0.93633 0.90255 1.21261 1.01958 0.97835 1.00739 1.21759 0.93990 0.91961 0.88071 1.98370 1.94086 1.78516 1.30982 1.67206 1.25788 1.30417 0.97487 1.18656 0.95319 0.92776 0.91103 1.20614 1.00746 1.01112 0.90528 1.20849 0.97423 0.95597 0.97511 1.20912 0.98267 0.97907 0.98836 1.21345 0.97782 0.97775 0.90632 1.18865 0.98914 0.97167 0.95434 0.93161 0.88680 0.86453 0.84255 0.85303 0.85779 0.85726 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.77 12.77 55.43 0.71 -22.06 16 2 C 0.09 2.27 5.39 -17.82 -0.10 2.18 16 3 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -13.49 8.45 -34.44 -0.29 -13.78 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.25 5.70 2.22 -70.02 -0.16 5.55 16 10 H 0.06 1.47 7.07 -51.93 -0.37 1.10 16 11 N -0.81 -17.38 8.03 -6.65 -0.05 -17.43 16 12 C 0.01 0.24 5.05 -104.28 -0.53 -0.28 16 13 C -0.20 -3.66 9.02 -39.74 -0.36 -4.01 16 14 C 0.22 4.00 7.26 -17.35 -0.13 3.88 16 15 Cl -0.05 -0.73 29.08 -51.86 -1.51 -2.24 16 16 N -0.50 -9.39 10.31 -8.10 -0.08 -9.48 16 17 C 0.14 2.64 6.60 -84.86 -0.56 2.08 16 18 C -0.11 -1.70 9.98 -39.47 -0.39 -2.10 16 19 C -0.09 -1.25 9.94 -39.94 -0.40 -1.65 16 20 C -0.14 -2.04 9.96 -39.92 -0.40 -2.44 16 21 C -0.06 -1.00 9.23 -39.51 -0.36 -1.37 16 22 C -0.10 -1.95 5.74 -106.80 -0.61 -2.57 16 23 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 24 H 0.30 5.78 9.06 -39.29 -0.36 5.42 16 25 H 0.32 6.62 7.36 -39.29 -0.29 6.33 16 26 H 0.14 2.39 6.32 -52.48 -0.33 2.06 16 27 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 30 H 0.15 2.73 6.56 -52.49 -0.34 2.38 16 LS Contribution 276.49 15.07 4.17 4.17 Total: -1.00 -27.86 276.49 -8.57 -36.43 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -2.50 Total: 9.89 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -4.28 Total: -14.52 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.57 Total: -48.97 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.51 Total: -2.24 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.86 -8.57 -36.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309231466.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.420 kcal (2) G-P(sol) polarization free energy of solvation -27.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds