Wall clock time and date at job start Mon Mar 30 2020 06:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 120.00163 * 2 1 4 4 H 1.48496 * 109.47414 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46749 * 299.99988 * 3 2 1 6 6 H 1.48492 * 109.46912 * 59.99609 * 3 2 1 7 7 C 1.37871 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00449 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00258 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.47055 * 59.99669 * 9 7 2 11 11 N 1.46902 * 109.46793 * 300.00084 * 9 7 2 12 12 C 1.50696 * 109.47404 * 179.97438 * 9 7 2 13 13 C 1.36540 * 120.91297 * 100.02199 * 12 9 7 14 14 C 1.39463 * 119.92276 * 179.97438 * 13 12 9 15 15 Cl 1.73597 * 119.14328 * 180.02562 * 14 13 12 16 16 N 1.31226 * 121.71394 * 359.46746 * 14 13 12 17 17 C 1.33685 * 121.30234 * 0.81269 * 16 14 13 18 18 C 1.40586 * 121.06567 * 179.20195 * 17 16 14 19 19 C 1.36088 * 119.74837 * 180.02562 * 18 17 16 20 20 C 1.39352 * 121.06629 * 359.97438 * 19 18 17 21 21 C 1.36151 * 120.86398 * 0.02562 * 20 19 18 22 22 C 1.40414 * 119.61679 * 0.25253 * 21 20 19 23 23 H 0.97000 * 119.99514 * 0.02562 * 1 2 3 24 24 H 1.00906 * 110.99995 * 176.04227 * 11 9 7 25 25 H 1.00897 * 111.00064 * 299.99388 * 11 9 7 26 26 H 1.08004 * 120.03711 * 359.97438 * 13 12 9 27 27 H 1.08003 * 120.13183 * 359.97438 * 18 17 16 28 28 H 1.08000 * 119.46662 * 180.02562 * 19 18 17 29 29 H 1.08003 * 119.56730 * 180.02562 * 20 19 18 30 30 H 1.08002 * 120.18664 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4061 -2.5766 1.1997 12 6 2.2304 -3.6445 0.0005 13 6 2.5312 -4.3102 1.1541 14 6 3.4402 -5.3677 1.1303 15 17 3.8074 -6.2003 2.6086 16 7 4.0169 -5.7567 0.0176 17 6 3.7695 -5.1433 -1.1442 18 6 4.4027 -5.5536 -2.3304 19 6 4.1314 -4.9097 -3.4983 20 6 3.2322 -3.8459 -3.5408 21 6 2.5998 -3.4204 -2.4127 22 6 2.8601 -4.0577 -1.1889 23 1 -0.4849 0.8401 -0.0004 24 1 -0.1579 -3.4133 1.1912 25 1 0.9638 -2.5251 2.0390 26 1 2.0659 -4.0181 2.0839 27 1 5.1026 -6.3760 -2.3149 28 1 4.6201 -5.2289 -4.4069 29 1 3.0345 -3.3525 -4.4810 30 1 1.9053 -2.5946 -2.4582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309231466.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:39 Heat of formation + Delta-G solvation = 29.720247 kcal Electronic energy + Delta-G solvation = -16922.863745 eV Core-core repulsion = 14128.833426 eV Total energy + Delta-G solvation = -2794.030318 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.93694 -38.44229 -37.64989 -36.93523 -34.25077 -32.71307 -31.39052 -30.64806 -28.27056 -25.64238 -24.61532 -23.86409 -21.59471 -19.15357 -18.64706 -18.36606 -17.78889 -16.59765 -16.11482 -15.77799 -15.61297 -15.40039 -15.00350 -14.80915 -14.39199 -14.04186 -13.56966 -13.25922 -12.80312 -12.76996 -12.54603 -12.30588 -12.27659 -12.05352 -12.02367 -11.70731 -10.90717 -10.67407 -10.57567 -9.68446 -9.18353 -9.04060 -8.03652 -6.25369 -0.61603 -0.25328 0.67397 1.01420 1.40733 1.45287 1.53996 1.88108 2.44478 3.07556 3.20494 3.37328 3.66062 3.77667 3.92338 4.12052 4.21685 4.31686 4.40900 4.54951 4.79235 4.80588 5.04651 5.13061 5.32219 5.42161 5.53212 5.60043 5.70373 5.91678 6.05070 6.56041 6.61345 6.99694 7.15110 7.47170 8.99689 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.007866 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.426180 B = 3558.970297 C = 4658.657881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.046 3.954 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.040 0.960 9 C 0.264 3.736 10 H 0.035 0.965 11 N -0.818 5.818 12 C -0.011 4.011 13 C -0.195 4.195 14 C 0.207 3.793 15 Cl -0.024 7.024 16 N -0.500 5.500 17 C 0.119 3.881 18 C -0.115 4.115 19 C -0.078 4.078 20 C -0.120 4.120 21 C -0.090 4.090 22 C -0.118 4.118 23 H 0.258 0.742 24 H 0.316 0.684 25 H 0.327 0.673 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.173 0.827 29 H 0.157 0.843 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.252 -9.566 -3.996 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.159 4.159 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.059 0.941 9 C 0.153 3.847 10 H 0.053 0.947 11 N -0.346 5.346 12 C -0.021 4.021 13 C -0.216 4.216 14 C 0.029 3.971 15 Cl 0.005 6.995 16 N -0.213 5.213 17 C -0.001 4.001 18 C -0.133 4.133 19 C -0.098 4.098 20 C -0.138 4.138 21 C -0.109 4.109 22 C -0.121 4.121 23 H 0.068 0.932 24 H 0.128 0.872 25 H 0.140 0.860 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.190 0.810 29 H 0.175 0.825 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.359 -9.547 -4.210 12.219 hybrid contribution 0.229 0.724 0.829 1.125 sum 6.588 -8.822 -3.381 11.518 Atomic orbital electron populations 1.70197 1.06751 1.26593 1.47093 1.25520 0.95335 1.01292 0.93759 0.85759 0.78893 0.80656 0.77719 1.20029 1.20242 1.20839 1.20842 0.91619 0.90218 1.54851 0.94132 1.17963 0.87318 0.88350 0.91041 0.94716 1.58972 1.28086 1.43345 1.04149 1.22099 0.94369 0.93918 0.91712 1.21326 1.01938 0.97811 1.00507 1.21879 0.94110 0.92265 0.88878 1.98368 1.93893 1.77898 1.29364 1.67291 1.25699 1.30431 0.97838 1.19094 0.95926 0.92928 0.92189 1.20985 1.00637 1.01783 0.89924 1.21344 0.95960 0.93876 0.98571 1.21348 0.96367 0.97274 0.98816 1.21285 0.99433 0.98498 0.91645 1.19043 0.99432 0.97962 0.95645 0.93244 0.87249 0.85961 0.83463 0.83105 0.80995 0.82487 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.04 12.77 21.45 0.27 -47.77 16 2 C 0.05 2.42 5.39 84.65 0.46 2.87 16 3 Si 0.94 42.11 29.54 68.60 2.03 44.14 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.54 -27.87 8.45 25.60 0.22 -27.66 16 8 H 0.04 2.18 7.74 -2.91 -0.02 2.16 16 9 C 0.26 12.33 2.22 43.42 0.10 12.42 16 10 H 0.04 1.79 7.07 -2.38 -0.02 1.78 16 11 N -0.82 -36.09 8.03 -174.95 -1.41 -37.49 16 12 C -0.01 -0.44 5.05 -19.64 -0.10 -0.54 16 13 C -0.19 -7.33 9.02 22.17 0.20 -7.13 16 14 C 0.21 7.45 7.26 85.08 0.62 8.06 16 15 Cl -0.02 -0.70 29.08 -2.72 -0.08 -0.78 16 16 N -0.50 -18.49 10.31 -179.54 -1.85 -20.34 16 17 C 0.12 4.30 6.60 40.29 0.27 4.57 16 18 C -0.11 -3.18 9.98 22.34 0.22 -2.96 16 19 C -0.08 -1.76 9.94 22.04 0.22 -1.54 16 20 C -0.12 -3.15 9.96 22.05 0.22 -2.93 16 21 C -0.09 -3.18 9.23 22.31 0.21 -2.97 16 22 C -0.12 -4.62 5.74 -21.28 -0.12 -4.74 16 23 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 24 H 0.32 12.36 9.06 -89.69 -0.81 11.55 16 25 H 0.33 13.70 7.36 -89.70 -0.66 13.04 16 26 H 0.15 5.11 6.32 -2.91 -0.02 5.10 16 27 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.13 4.89 6.56 -2.91 -0.02 4.88 16 Total: -1.00 -60.52 276.49 1.19 -59.32 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.27 Total: 25.45 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 2.50 Total: -22.53 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -2.98 Total: -105.60 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -60.52 1.19 -59.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309231466.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.045 kcal (2) G-P(sol) polarization free energy of solvation -60.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds