Wall clock time and date at job start Mon Mar 30 2020 06:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35598 * 116.99813 * 2 1 4 4 C 1.39106 * 119.51843 * 179.97438 * 3 2 1 5 5 C 1.38028 * 119.26573 * 179.69600 * 4 3 2 6 6 C 1.40237 * 118.35417 * 0.58535 * 5 4 3 7 7 C 1.47679 * 120.49976 * 179.71036 * 6 5 4 8 8 N 1.29880 * 125.06556 * 180.02562 * 7 6 5 9 9 C 1.32789 * 115.99346 * 180.22493 * 8 7 6 10 10 C 1.41142 * 122.77361 * 179.80289 * 9 8 7 11 11 H 1.07997 * 120.00348 * 186.38369 * 10 9 8 12 12 C 1.39636 * 120.00204 * 6.38004 * 10 9 8 13 13 N 1.31068 * 119.99608 * 6.78492 * 12 10 9 14 14 Si 1.86799 * 120.00136 * 186.50650 * 12 10 9 15 15 H 1.48496 * 109.46928 * 265.29232 * 14 12 10 16 16 H 1.48501 * 109.47220 * 25.29475 * 14 12 10 17 17 H 1.48495 * 109.47248 * 145.29792 * 14 12 10 18 18 C 1.37964 * 114.45450 * 359.52943 * 9 8 7 19 19 S 1.70997 * 108.90375 * 0.24721 * 18 9 8 20 20 C 1.39503 * 118.99417 * 359.43492 * 6 5 4 21 21 N 1.31722 * 120.62645 * 0.27516 * 20 6 5 22 22 H 1.09006 * 109.46847 * 299.99970 * 1 2 3 23 23 H 1.08996 * 109.47147 * 59.99650 * 1 2 3 24 24 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 25 25 H 1.08004 * 120.36879 * 359.97318 * 4 3 2 26 26 H 1.08005 * 120.82372 * 180.28876 * 5 4 3 27 27 H 0.97002 * 119.99614 * 179.72308 * 13 12 10 28 28 H 1.08001 * 125.55269 * 180.25062 * 18 9 8 29 29 H 1.08002 * 119.68869 * 180.25766 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 3.4343 1.2694 0.0005 5 6 4.0555 2.5020 -0.0059 6 6 3.2531 3.6521 -0.0001 7 6 3.8679 4.9949 -0.0001 8 7 3.2120 6.1159 0.0055 9 6 3.9483 7.2210 -0.0003 10 6 3.3843 8.5148 0.0004 11 1 4.0199 9.3811 -0.1084 12 6 2.0043 8.6749 0.1418 13 7 1.2481 7.6376 0.4066 14 14 1.2371 10.3684 -0.0386 15 1 1.0957 10.9931 1.3011 16 1 2.1071 11.2177 -0.8915 17 1 -0.1013 10.2409 -0.6690 18 6 5.3101 7.0000 -0.0011 19 16 5.5978 5.3144 -0.0011 20 6 1.8655 3.5087 -0.0002 21 7 1.3146 2.3122 -0.0002 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 4.0208 0.3624 0.0014 26 1 5.1328 2.5788 -0.0103 27 1 0.2900 7.7495 0.5088 28 1 6.0707 7.7667 -0.0016 29 1 1.2369 4.3869 0.0000 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309291082.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:35 Heat of formation + Delta-G solvation = 35.532013 kcal Electronic energy + Delta-G solvation = -16359.184898 eV Core-core repulsion = 13567.450303 eV Total energy + Delta-G solvation = -2791.734595 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.30266 -38.13892 -37.36318 -33.37559 -32.39495 -31.16144 -28.64225 -27.08397 -25.67736 -24.19560 -23.01120 -21.43696 -19.09833 -18.19793 -17.74960 -16.32908 -15.86180 -15.82735 -15.22172 -14.55336 -14.21780 -14.03518 -13.51383 -13.29795 -12.93592 -12.66835 -12.16281 -11.84056 -11.64689 -11.54773 -11.30005 -11.02511 -10.75974 -10.48818 -9.83613 -9.75274 -9.41712 -9.33399 -8.62807 -8.18267 -7.93726 -7.14673 -6.62462 -4.42545 1.08597 1.48455 2.46264 2.71821 3.03069 3.08170 3.12580 3.22392 3.53205 3.96595 4.00398 4.38388 4.61109 4.91176 5.20528 5.30571 5.36222 5.37100 5.43608 5.44889 5.68348 6.01311 6.10923 6.41772 6.68729 6.77292 7.01360 7.17235 7.36888 7.41863 8.11446 8.13514 8.46867 8.81210 9.47489 10.27602 Molecular weight = 262.05amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.005886 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.796917 B = 4756.042376 C = 5956.475085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.307 3.693 4 C -0.190 4.190 5 C -0.034 4.034 6 C -0.079 4.079 7 C 0.080 3.920 8 N -0.389 5.389 9 C 0.230 3.770 10 C -0.431 4.431 11 H 0.085 0.915 12 C 0.074 3.926 13 N -0.754 5.754 14 Si 0.912 3.088 15 H -0.270 1.270 16 H -0.262 1.262 17 H -0.276 1.276 18 C -0.449 4.449 19 S -0.009 6.009 20 C 0.180 3.820 21 N -0.539 5.539 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.275 0.725 28 H 0.141 0.859 29 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -10.349 -0.543 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.127 3.873 4 C -0.210 4.210 5 C -0.062 4.062 6 C -0.085 4.085 7 C -0.198 4.198 8 N -0.104 5.104 9 C 0.106 3.894 10 C -0.466 4.466 11 H 0.103 0.897 12 C -0.149 4.149 13 N -0.377 5.377 14 Si 0.736 3.264 15 H -0.196 1.196 16 H -0.186 1.186 17 H -0.201 1.201 18 C -0.588 4.588 19 S 0.241 5.759 20 C 0.021 3.979 21 N -0.262 5.262 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.158 0.842 26 H 0.160 0.840 27 H 0.086 0.914 28 H 0.159 0.841 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.253 -11.293 -0.491 11.373 hybrid contribution 0.010 1.984 -0.035 1.984 sum -1.243 -9.309 -0.525 9.406 Atomic orbital electron populations 1.22807 0.77596 1.02411 1.02620 1.86170 1.22670 1.24968 1.88161 1.19946 0.89402 0.84769 0.93141 1.20807 0.91757 0.98945 1.09502 1.21439 1.00344 0.90425 0.93961 1.18874 0.94186 0.90293 1.05155 1.25483 0.91454 0.95035 1.07873 1.67383 1.34994 0.96494 1.11505 1.17825 0.86446 0.91951 0.93217 1.18936 0.92053 0.91031 1.44564 0.89671 1.25946 0.97500 0.98519 0.92905 1.70058 1.06056 1.30550 1.31038 0.86237 0.78840 0.82044 0.79237 1.19575 1.18580 1.20078 1.25349 0.99465 0.95642 1.38348 1.82433 1.11357 1.05411 1.76720 1.22878 0.92160 0.93372 0.89525 1.67382 1.40498 0.98684 1.19597 0.92331 0.92340 0.89036 0.84160 0.84023 0.91395 0.84146 0.80321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.37 101.05 1.05 1.51 15 2 O -0.31 -4.44 10.47 -18.49 -0.19 -4.63 15 3 C 0.31 4.92 7.49 -17.01 -0.13 4.80 15 4 C -0.19 -2.76 10.02 -39.34 -0.39 -3.16 15 5 C -0.03 -0.55 9.70 -38.91 -0.38 -0.93 15 6 C -0.08 -1.54 5.89 -104.82 -0.62 -2.16 15 7 C 0.08 1.85 7.30 -14.52 -0.11 1.74 15 8 N -0.39 -10.25 8.09 -9.19 -0.07 -10.32 15 9 C 0.23 6.26 6.42 -86.45 -0.56 5.70 15 10 C -0.43 -11.63 9.22 -37.96 -0.35 -11.98 15 11 H 0.09 2.18 7.85 -52.49 -0.41 1.77 15 12 C 0.07 1.87 5.48 -17.36 -0.10 1.78 15 13 N -0.75 -19.68 11.77 55.53 0.65 -19.03 15 14 Si 0.91 18.78 29.56 -169.99 -5.03 13.76 15 15 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 17 H -0.28 -5.57 7.11 56.52 0.40 -5.16 15 18 C -0.45 -11.18 10.99 30.63 0.34 -10.85 15 19 S -0.01 -0.20 22.15 -107.50 -2.38 -2.58 15 20 C 0.18 3.48 10.84 -17.13 -0.19 3.30 15 21 N -0.54 -9.56 9.18 -12.96 -0.12 -9.68 15 22 H 0.06 0.68 8.10 -51.93 -0.42 0.25 15 23 H 0.06 0.67 8.10 -51.93 -0.42 0.25 15 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.14 1.62 8.06 -52.48 -0.42 1.20 15 26 H 0.14 2.00 7.38 -52.48 -0.39 1.61 15 27 H 0.28 6.54 8.30 -40.82 -0.34 6.20 15 28 H 0.14 3.33 8.06 -52.49 -0.42 2.90 15 29 H 0.18 3.73 7.80 -52.49 -0.41 3.32 15 LS Contribution 278.06 15.07 4.19 4.19 Total: -1.00 -29.07 278.06 -6.83 -35.90 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -2.45 Total: 2.64 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.42 Total: -10.25 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.46 Total: -39.03 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.19 Total: -4.63 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 16 Polarization: -0.20 SS G_CDS: -2.38 Total: -2.58 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.07 -6.83 -35.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309291082.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.428 kcal (2) G-P(sol) polarization free energy of solvation -29.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds