Wall clock time and date at job start Mon Mar 30 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35951 * 116.99792 * 2 1 4 4 C 1.39327 * 119.85436 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.53906 * 180.02562 * 4 3 2 6 6 C 1.38413 * 120.22476 * 0.02562 * 5 4 3 7 7 O 1.35697 * 120.15118 * 179.97438 * 6 5 4 8 8 C 1.42897 * 116.99678 * 0.02571 * 7 6 5 9 9 F 1.39905 * 109.47356 * 60.00030 * 8 7 6 10 10 F 1.39904 * 109.47068 * 179.97438 * 8 7 6 11 11 F 1.39897 * 109.47226 * 299.99860 * 8 7 6 12 12 C 1.41322 * 119.69914 * 359.97438 * 6 5 4 13 13 C 1.41137 * 120.26149 * 179.97438 * 12 6 5 14 14 H 1.08000 * 120.00043 * 329.87394 * 13 12 6 15 15 C 1.39917 * 119.99857 * 150.15430 * 13 12 6 16 16 N 1.30878 * 119.99777 * 161.87168 * 15 13 12 17 17 Si 1.86805 * 120.00071 * 341.86462 * 15 13 12 18 18 H 1.48498 * 109.46596 * 95.39945 * 17 15 13 19 19 H 1.48495 * 109.47021 * 215.39939 * 17 15 13 20 20 H 1.48496 * 109.47105 * 335.40414 * 17 15 13 21 21 C 1.37896 * 119.84516 * 180.28134 * 3 2 1 22 22 H 1.08993 * 109.46809 * 299.99729 * 1 2 3 23 23 H 1.08997 * 109.46974 * 60.00273 * 1 2 3 24 24 H 1.09005 * 109.47006 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.72939 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.89144 * 180.02562 * 5 4 3 27 27 H 0.97008 * 119.99531 * 179.97438 * 16 15 13 28 28 H 1.07998 * 120.12557 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2844 2.3779 0.0005 5 6 1.8972 3.6170 0.0000 6 6 3.2781 3.7114 -0.0016 7 8 3.8780 4.9286 -0.0026 8 6 3.0228 6.0733 -0.0014 9 9 2.2171 6.0523 1.1421 10 9 3.8004 7.2364 -0.0021 11 9 2.2136 6.0521 -1.1424 12 6 4.0604 2.5345 -0.0021 13 6 5.4693 2.6169 -0.0043 14 1 5.9604 3.4558 -0.4750 15 6 6.2300 1.6089 0.5981 16 7 7.4991 1.4828 0.3043 17 14 5.4342 0.4432 1.8218 18 1 5.0113 -0.7962 1.1216 19 1 6.4108 0.1014 2.8869 20 1 4.2478 1.0978 2.4294 21 6 3.4235 1.2799 -0.0059 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2063 2.3135 0.0005 26 1 1.2965 4.5145 0.0009 27 1 8.0266 0.7841 0.7223 28 1 4.0113 0.3738 -0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309313746.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:22 Heat of formation + Delta-G solvation = -215.282776 kcal Electronic energy + Delta-G solvation = -20086.215544 eV Core-core repulsion = 16266.702441 eV Total energy + Delta-G solvation = -3819.513103 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.86470 -47.61480 -47.44585 -39.40174 -38.19999 -35.74114 -33.63494 -30.74200 -29.08621 -26.74759 -25.41876 -24.88540 -22.06150 -20.90559 -18.79381 -18.55859 -18.53139 -17.81137 -16.66919 -15.83450 -15.15349 -15.08976 -14.80058 -14.49039 -14.41355 -14.03840 -13.94067 -13.71965 -13.61623 -13.39302 -13.27929 -12.66695 -12.43808 -12.16020 -11.82125 -11.68978 -11.25529 -10.94326 -10.75375 -10.15809 -9.94586 -9.79349 -9.27614 -7.96148 -7.13677 -7.09542 -4.65899 2.31561 2.34190 2.38152 3.09008 3.15499 3.27246 3.56157 3.90253 3.97684 4.26015 4.47122 4.59284 5.14310 5.41831 5.51838 5.60745 5.68636 5.80262 6.15910 6.39714 6.49925 6.85483 6.93681 7.12853 7.30645 7.58372 7.65706 8.08340 8.24728 8.44812 8.56870 9.88874 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.009973 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.513303 B = 2806.964673 C = 4203.359639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C 0.153 3.847 4 C -0.298 4.298 5 C -0.109 4.109 6 C -0.037 4.037 7 O -0.290 6.290 8 C 0.595 3.405 9 F -0.177 7.177 10 F -0.146 7.146 11 F -0.177 7.177 12 C 0.126 3.874 13 C -0.421 4.421 14 H 0.102 0.898 15 C 0.085 3.915 16 N -0.790 5.790 17 Si 0.911 3.089 18 H -0.264 1.264 19 H -0.287 1.287 20 H -0.243 1.243 21 C -0.252 4.252 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.110 0.890 27 H 0.290 0.710 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.015 2.198 0.872 9.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.241 6.241 3 C 0.108 3.892 4 C -0.318 4.318 5 C -0.128 4.128 6 C -0.079 4.079 7 O -0.210 6.210 8 C 0.503 3.497 9 F -0.159 7.159 10 F -0.128 7.128 11 F -0.160 7.160 12 C 0.122 3.878 13 C -0.448 4.448 14 H 0.119 0.881 15 C -0.137 4.137 16 N -0.412 5.412 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.166 1.166 21 C -0.272 4.272 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.453 1.989 0.871 8.727 hybrid contribution -0.729 -0.038 0.455 0.860 sum -9.182 1.951 1.326 9.480 Atomic orbital electron populations 1.22857 0.79950 1.02445 1.00958 1.86023 1.20229 1.28449 1.89442 1.18740 0.91884 0.82987 0.95557 1.20162 0.97958 0.91251 1.22451 1.20716 0.92116 0.97896 1.02080 1.18656 0.90827 0.81285 1.17099 1.86372 1.32381 1.12102 1.90111 1.19587 0.75246 0.80495 0.74375 1.93237 1.74362 1.96375 1.51939 1.93225 1.75960 1.47178 1.96390 1.93235 1.74198 1.96374 1.52160 1.16695 0.93182 0.86828 0.91132 1.19422 0.89004 1.06794 1.29604 0.88051 1.26238 0.94738 0.96348 0.96375 1.69698 1.08177 1.28864 1.34498 0.86285 0.79904 0.80328 0.79812 1.18969 1.21440 1.16565 1.20039 0.90612 0.96901 1.19675 0.93267 0.93206 0.89424 0.87270 0.87228 0.89946 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.81 101.05 0.99 1.46 15 2 O -0.33 -6.48 10.49 -19.59 -0.21 -6.69 15 3 C 0.15 3.38 6.67 -39.30 -0.26 3.12 15 4 C -0.30 -6.15 9.04 -39.18 -0.35 -6.50 15 5 C -0.11 -2.33 8.25 -39.52 -0.33 -2.65 15 6 C -0.04 -0.87 6.52 -38.35 -0.25 -1.12 15 7 O -0.29 -6.50 9.72 -18.80 -0.18 -6.69 15 8 C 0.59 11.00 3.42 101.05 0.35 11.34 15 9 F -0.18 -3.15 15.56 2.25 0.04 -3.11 15 10 F -0.15 -2.48 17.53 2.25 0.04 -2.44 15 11 F -0.18 -3.14 15.56 2.25 0.04 -3.11 15 12 C 0.13 3.18 5.11 -106.70 -0.54 2.64 15 13 C -0.42 -11.23 9.18 -37.85 -0.35 -11.58 15 14 H 0.10 2.85 7.90 -52.49 -0.41 2.44 15 15 C 0.08 2.16 5.40 -17.33 -0.09 2.07 15 16 N -0.79 -20.35 13.93 55.55 0.77 -19.58 15 17 Si 0.91 20.49 24.52 -169.99 -4.17 16.32 15 18 H -0.26 -5.81 6.71 56.52 0.38 -5.43 15 19 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15 20 H -0.24 -5.64 6.87 56.52 0.39 -5.26 15 21 C -0.25 -6.13 7.09 -38.78 -0.28 -6.40 15 22 H 0.05 0.65 7.65 -51.93 -0.40 0.25 15 23 H 0.05 0.65 7.65 -51.93 -0.40 0.25 15 24 H 0.09 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.11 1.91 6.26 -52.49 -0.33 1.58 15 26 H 0.11 2.10 5.08 -52.49 -0.27 1.83 15 27 H 0.29 6.71 8.30 -40.82 -0.34 6.37 15 28 H 0.12 2.92 4.76 -52.49 -0.25 2.67 15 LS Contribution 254.23 15.07 3.83 3.83 Total: -1.00 -26.97 254.23 -2.61 -29.58 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -1.65 Total: -0.49 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -1.12 Total: -7.62 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.77 Total: -19.58 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: -0.39 Total: -13.38 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 0.11 Total: -8.66 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.17 Total: 16.32 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.97 -2.61 -29.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309313746.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.707 kcal (2) G-P(sol) polarization free energy of solvation -26.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds