Wall clock time and date at job start Mon Mar 30 2020 06:26:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42910 * 1
3 3 C 1.35951 * 116.99792 * 2 1
4 4 C 1.39327 * 119.85436 * 0.02562 * 3 2 1
5 5 C 1.38234 * 120.53906 * 180.02562 * 4 3 2
6 6 C 1.38413 * 120.22476 * 0.02562 * 5 4 3
7 7 O 1.35697 * 120.15118 * 179.97438 * 6 5 4
8 8 C 1.42897 * 116.99678 * 0.02571 * 7 6 5
9 9 F 1.39905 * 109.47356 * 60.00030 * 8 7 6
10 10 F 1.39904 * 109.47068 * 179.97438 * 8 7 6
11 11 F 1.39897 * 109.47226 * 299.99860 * 8 7 6
12 12 C 1.41322 * 119.69914 * 359.97438 * 6 5 4
13 13 C 1.41137 * 120.26149 * 179.97438 * 12 6 5
14 14 H 1.08000 * 120.00043 * 329.87394 * 13 12 6
15 15 C 1.39917 * 119.99857 * 150.15430 * 13 12 6
16 16 N 1.30878 * 119.99777 * 161.87168 * 15 13 12
17 17 Si 1.86805 * 120.00071 * 341.86462 * 15 13 12
18 18 H 1.48498 * 109.46596 * 95.39945 * 17 15 13
19 19 H 1.48495 * 109.47021 * 215.39939 * 17 15 13
20 20 H 1.48496 * 109.47105 * 335.40414 * 17 15 13
21 21 C 1.37896 * 119.84516 * 180.28134 * 3 2 1
22 22 H 1.08993 * 109.46809 * 299.99729 * 1 2 3
23 23 H 1.08997 * 109.46974 * 60.00273 * 1 2 3
24 24 H 1.09005 * 109.47006 * 179.97438 * 1 2 3
25 25 H 1.08000 * 119.72939 * 359.97438 * 4 3 2
26 26 H 1.07997 * 119.89144 * 180.02562 * 5 4 3
27 27 H 0.97008 * 119.99531 * 179.97438 * 16 15 13
28 28 H 1.07998 * 120.12557 * 359.97438 * 21 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0463 1.2114 0.0000
4 6 1.2844 2.3779 0.0005
5 6 1.8972 3.6170 0.0000
6 6 3.2781 3.7114 -0.0016
7 8 3.8780 4.9286 -0.0026
8 6 3.0228 6.0733 -0.0014
9 9 2.2171 6.0523 1.1421
10 9 3.8004 7.2364 -0.0021
11 9 2.2136 6.0521 -1.1424
12 6 4.0604 2.5345 -0.0021
13 6 5.4693 2.6169 -0.0043
14 1 5.9604 3.4558 -0.4750
15 6 6.2300 1.6089 0.5981
16 7 7.4991 1.4828 0.3043
17 14 5.4342 0.4432 1.8218
18 1 5.0113 -0.7962 1.1216
19 1 6.4108 0.1014 2.8869
20 1 4.2478 1.0978 2.4294
21 6 3.4235 1.2799 -0.0059
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 0.2063 2.3135 0.0005
26 1 1.2965 4.5145 0.0009
27 1 8.0266 0.7841 0.7223
28 1 4.0113 0.3738 -0.0100
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309313746.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:26:22
Heat of formation + Delta-G solvation = -215.282776 kcal
Electronic energy + Delta-G solvation = -20086.215544 eV
Core-core repulsion = 16266.702441 eV
Total energy + Delta-G solvation = -3819.513103 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 262.060 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-49.86470 -47.61480 -47.44585 -39.40174 -38.19999 -35.74114 -33.63494 -30.74200
-29.08621 -26.74759 -25.41876 -24.88540 -22.06150 -20.90559 -18.79381 -18.55859
-18.53139 -17.81137 -16.66919 -15.83450 -15.15349 -15.08976 -14.80058 -14.49039
-14.41355 -14.03840 -13.94067 -13.71965 -13.61623 -13.39302 -13.27929 -12.66695
-12.43808 -12.16020 -11.82125 -11.68978 -11.25529 -10.94326 -10.75375 -10.15809
-9.94586 -9.79349 -9.27614 -7.96148 -7.13677 -7.09542 -4.65899 2.31561
2.34190 2.38152 3.09008 3.15499 3.27246 3.56157 3.90253 3.97684
4.26015 4.47122 4.59284 5.14310 5.41831 5.51838 5.60745 5.68636
5.80262 6.15910 6.39714 6.49925 6.85483 6.93681 7.12853 7.30645
7.58372 7.65706 8.08340 8.24728 8.44812 8.56870 9.88874
Molecular weight = 262.06amu
Principal moments of inertia in cm(-1)
A = 0.016010 B = 0.009973 C = 0.006660
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1748.513303 B = 2806.964673 C = 4203.359639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.327 6.327
3 C 0.153 3.847
4 C -0.298 4.298
5 C -0.109 4.109
6 C -0.037 4.037
7 O -0.290 6.290
8 C 0.595 3.405
9 F -0.177 7.177
10 F -0.146 7.146
11 F -0.177 7.177
12 C 0.126 3.874
13 C -0.421 4.421
14 H 0.102 0.898
15 C 0.085 3.915
16 N -0.790 5.790
17 Si 0.911 3.089
18 H -0.264 1.264
19 H -0.287 1.287
20 H -0.243 1.243
21 C -0.252 4.252
22 H 0.049 0.951
23 H 0.049 0.951
24 H 0.087 0.913
25 H 0.109 0.891
26 H 0.110 0.890
27 H 0.290 0.710
28 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.015 2.198 0.872 9.320
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.241 6.241
3 C 0.108 3.892
4 C -0.318 4.318
5 C -0.128 4.128
6 C -0.079 4.079
7 O -0.210 6.210
8 C 0.503 3.497
9 F -0.159 7.159
10 F -0.128 7.128
11 F -0.160 7.160
12 C 0.122 3.878
13 C -0.448 4.448
14 H 0.119 0.881
15 C -0.137 4.137
16 N -0.412 5.412
17 Si 0.737 3.263
18 H -0.190 1.190
19 H -0.214 1.214
20 H -0.166 1.166
21 C -0.272 4.272
22 H 0.067 0.933
23 H 0.068 0.932
24 H 0.106 0.894
25 H 0.127 0.873
26 H 0.128 0.872
27 H 0.101 0.899
28 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -8.453 1.989 0.871 8.727
hybrid contribution -0.729 -0.038 0.455 0.860
sum -9.182 1.951 1.326 9.480
Atomic orbital electron populations
1.22857 0.79950 1.02445 1.00958 1.86023 1.20229 1.28449 1.89442
1.18740 0.91884 0.82987 0.95557 1.20162 0.97958 0.91251 1.22451
1.20716 0.92116 0.97896 1.02080 1.18656 0.90827 0.81285 1.17099
1.86372 1.32381 1.12102 1.90111 1.19587 0.75246 0.80495 0.74375
1.93237 1.74362 1.96375 1.51939 1.93225 1.75960 1.47178 1.96390
1.93235 1.74198 1.96374 1.52160 1.16695 0.93182 0.86828 0.91132
1.19422 0.89004 1.06794 1.29604 0.88051 1.26238 0.94738 0.96348
0.96375 1.69698 1.08177 1.28864 1.34498 0.86285 0.79904 0.80328
0.79812 1.18969 1.21440 1.16565 1.20039 0.90612 0.96901 1.19675
0.93267 0.93206 0.89424 0.87270 0.87228 0.89946 0.86162
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.47 9.81 101.05 0.99 1.46 15
2 O -0.33 -6.48 10.49 -19.59 -0.21 -6.69 15
3 C 0.15 3.38 6.67 -39.30 -0.26 3.12 15
4 C -0.30 -6.15 9.04 -39.18 -0.35 -6.50 15
5 C -0.11 -2.33 8.25 -39.52 -0.33 -2.65 15
6 C -0.04 -0.87 6.52 -38.35 -0.25 -1.12 15
7 O -0.29 -6.50 9.72 -18.80 -0.18 -6.69 15
8 C 0.59 11.00 3.42 101.05 0.35 11.34 15
9 F -0.18 -3.15 15.56 2.25 0.04 -3.11 15
10 F -0.15 -2.48 17.53 2.25 0.04 -2.44 15
11 F -0.18 -3.14 15.56 2.25 0.04 -3.11 15
12 C 0.13 3.18 5.11 -106.70 -0.54 2.64 15
13 C -0.42 -11.23 9.18 -37.85 -0.35 -11.58 15
14 H 0.10 2.85 7.90 -52.49 -0.41 2.44 15
15 C 0.08 2.16 5.40 -17.33 -0.09 2.07 15
16 N -0.79 -20.35 13.93 55.55 0.77 -19.58 15
17 Si 0.91 20.49 24.52 -169.99 -4.17 16.32 15
18 H -0.26 -5.81 6.71 56.52 0.38 -5.43 15
19 H -0.29 -6.15 7.11 56.52 0.40 -5.75 15
20 H -0.24 -5.64 6.87 56.52 0.39 -5.26 15
21 C -0.25 -6.13 7.09 -38.78 -0.28 -6.40 15
22 H 0.05 0.65 7.65 -51.93 -0.40 0.25 15
23 H 0.05 0.65 7.65 -51.93 -0.40 0.25 15
24 H 0.09 0.97 8.14 -51.93 -0.42 0.54 15
25 H 0.11 1.91 6.26 -52.49 -0.33 1.58 15
26 H 0.11 2.10 5.08 -52.49 -0.27 1.83 15
27 H 0.29 6.71 8.30 -40.82 -0.34 6.37 15
28 H 0.12 2.92 4.76 -52.49 -0.25 2.67 15
LS Contribution 254.23 15.07 3.83 3.83
Total: -1.00 -26.97 254.23 -2.61 -29.58
By element:
Atomic # 1 Polarization: 1.16 SS G_CDS: -1.65 Total: -0.49 kcal
Atomic # 6 Polarization: -6.51 SS G_CDS: -1.12 Total: -7.62 kcal
Atomic # 7 Polarization: -20.35 SS G_CDS: 0.77 Total: -19.58 kcal
Atomic # 8 Polarization: -12.99 SS G_CDS: -0.39 Total: -13.38 kcal
Atomic # 9 Polarization: -8.77 SS G_CDS: 0.11 Total: -8.66 kcal
Atomic # 14 Polarization: 20.49 SS G_CDS: -4.17 Total: 16.32 kcal
Total LS contribution 3.83 Total: 3.83 kcal
Total: -26.97 -2.61 -29.58 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309313746.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -185.707 kcal
(2) G-P(sol) polarization free energy of solvation -26.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.677 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.606 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -215.283 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds