Wall clock time and date at job start Mon Mar 30 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35951 * 116.99792 * 2 1 4 4 C 1.39327 * 119.85436 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.53906 * 180.02562 * 4 3 2 6 6 C 1.38413 * 120.22476 * 0.02562 * 5 4 3 7 7 O 1.35697 * 120.15118 * 179.97438 * 6 5 4 8 8 C 1.42897 * 116.99678 * 0.02571 * 7 6 5 9 9 F 1.39905 * 109.47356 * 60.00030 * 8 7 6 10 10 F 1.39904 * 109.47068 * 179.97438 * 8 7 6 11 11 F 1.39897 * 109.47226 * 299.99860 * 8 7 6 12 12 C 1.41322 * 119.69914 * 359.97438 * 6 5 4 13 13 C 1.41137 * 120.26149 * 179.97438 * 12 6 5 14 14 H 1.08000 * 120.00043 * 329.87394 * 13 12 6 15 15 C 1.39917 * 119.99857 * 150.15430 * 13 12 6 16 16 N 1.30878 * 119.99777 * 161.87168 * 15 13 12 17 17 Si 1.86805 * 120.00071 * 341.86462 * 15 13 12 18 18 H 1.48498 * 109.46596 * 95.39945 * 17 15 13 19 19 H 1.48495 * 109.47021 * 215.39939 * 17 15 13 20 20 H 1.48496 * 109.47105 * 335.40414 * 17 15 13 21 21 C 1.37896 * 119.84516 * 180.28134 * 3 2 1 22 22 H 1.08993 * 109.46809 * 299.99729 * 1 2 3 23 23 H 1.08997 * 109.46974 * 60.00273 * 1 2 3 24 24 H 1.09005 * 109.47006 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.72939 * 359.97438 * 4 3 2 26 26 H 1.07997 * 119.89144 * 180.02562 * 5 4 3 27 27 H 0.97008 * 119.99531 * 179.97438 * 16 15 13 28 28 H 1.07998 * 120.12557 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2844 2.3779 0.0005 5 6 1.8972 3.6170 0.0000 6 6 3.2781 3.7114 -0.0016 7 8 3.8780 4.9286 -0.0026 8 6 3.0228 6.0733 -0.0014 9 9 2.2171 6.0523 1.1421 10 9 3.8004 7.2364 -0.0021 11 9 2.2136 6.0521 -1.1424 12 6 4.0604 2.5345 -0.0021 13 6 5.4693 2.6169 -0.0043 14 1 5.9604 3.4558 -0.4750 15 6 6.2300 1.6089 0.5981 16 7 7.4991 1.4828 0.3043 17 14 5.4342 0.4432 1.8218 18 1 5.0113 -0.7962 1.1216 19 1 6.4108 0.1014 2.8869 20 1 4.2478 1.0978 2.4294 21 6 3.4235 1.2799 -0.0059 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2063 2.3135 0.0005 26 1 1.2965 4.5145 0.0009 27 1 8.0266 0.7841 0.7223 28 1 4.0113 0.3738 -0.0100 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309313746.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:21 Heat of formation + Delta-G solvation = -232.600145 kcal Electronic energy + Delta-G solvation = -20086.966481 eV Core-core repulsion = 16266.702441 eV Total energy + Delta-G solvation = -3820.264040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.33396 -49.06130 -48.91049 -41.08393 -39.80125 -37.45259 -35.46980 -32.55341 -30.71011 -28.15704 -27.04613 -26.53511 -23.78140 -22.60015 -20.41252 -20.15007 -20.04125 -19.48236 -18.37735 -17.49334 -16.71574 -16.58275 -16.44394 -15.98689 -15.88645 -15.56386 -15.39603 -15.35696 -15.19850 -14.97660 -14.84331 -14.38021 -14.04408 -13.91943 -13.34603 -13.29712 -12.76461 -12.70524 -12.35869 -11.95136 -11.63271 -11.46584 -11.06898 -9.78479 -9.00057 -8.82804 -6.60516 0.53548 0.60317 0.79196 1.27571 1.37381 1.46922 1.99697 2.09110 2.43474 2.57362 2.96891 3.05250 3.31680 3.88513 4.08934 4.39821 4.47591 4.48955 4.66310 4.74898 4.78999 5.09308 5.14574 5.39680 5.53548 5.81580 5.87318 6.14286 6.49109 6.63944 6.72483 8.07341 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.009973 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.513303 B = 2806.964673 C = 4203.359639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.150 3.850 4 C -0.277 4.277 5 C -0.108 4.108 6 C -0.051 4.051 7 O -0.315 6.315 8 C 0.602 3.398 9 F -0.169 7.169 10 F -0.137 7.137 11 F -0.169 7.169 12 C 0.108 3.892 13 C -0.460 4.460 14 H 0.066 0.934 15 C 0.054 3.946 16 N -0.829 5.829 17 Si 0.961 3.039 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.255 1.255 21 C -0.267 4.267 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.120 0.880 25 H 0.151 0.849 26 H 0.135 0.865 27 H 0.299 0.701 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 1.670 1.413 12.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.256 6.256 3 C 0.105 3.895 4 C -0.296 4.296 5 C -0.127 4.127 6 C -0.093 4.093 7 O -0.235 6.235 8 C 0.511 3.489 9 F -0.151 7.151 10 F -0.118 7.118 11 F -0.152 7.152 12 C 0.105 3.895 13 C -0.488 4.488 14 H 0.084 0.916 15 C -0.163 4.163 16 N -0.454 5.454 17 Si 0.784 3.216 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.179 1.179 21 C -0.287 4.287 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.138 0.862 25 H 0.168 0.832 26 H 0.153 0.847 27 H 0.110 0.890 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.576 1.463 1.406 11.753 hybrid contribution -0.051 0.184 0.223 0.294 sum -11.628 1.647 1.630 11.856 Atomic orbital electron populations 1.23312 0.76660 1.05250 1.02227 1.86015 1.23533 1.27122 1.88949 1.18796 0.91415 0.84585 0.94678 1.20673 1.00000 0.90189 1.18778 1.21052 0.91254 0.99414 1.00951 1.18818 0.91765 0.81376 1.17331 1.86320 1.34137 1.12786 1.90283 1.19375 0.75136 0.79743 0.74673 1.93248 1.73984 1.96304 1.51572 1.93250 1.75857 1.46334 1.96368 1.93246 1.73814 1.96302 1.51792 1.16851 0.92889 0.88281 0.91492 1.19291 0.90132 1.06925 1.32500 0.91622 1.26803 0.95038 0.97286 0.97195 1.69711 1.09141 1.30398 1.36147 0.85537 0.78929 0.78764 0.78361 1.18205 1.19591 1.17897 1.20110 0.92091 0.96245 1.20246 0.91900 0.91800 0.86194 0.83169 0.84699 0.88999 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 15 2 O -0.34 -12.38 10.49 -93.00 -0.98 -13.36 15 3 C 0.15 6.28 6.67 22.45 0.15 6.43 15 4 C -0.28 -10.31 9.04 22.53 0.20 -10.10 15 5 C -0.11 -4.30 8.25 22.31 0.18 -4.12 15 6 C -0.05 -2.40 6.52 23.07 0.15 -2.25 15 7 O -0.31 -14.22 9.72 -90.17 -0.88 -15.10 15 8 C 0.60 21.45 3.42 113.37 0.39 21.84 15 9 F -0.17 -5.63 15.56 44.97 0.70 -4.93 15 10 F -0.14 -4.51 17.53 44.97 0.79 -3.72 15 11 F -0.17 -5.64 15.56 44.97 0.70 -4.94 15 12 C 0.11 5.59 5.11 -21.21 -0.11 5.48 15 13 C -0.46 -25.85 9.18 23.39 0.21 -25.63 15 14 H 0.07 4.00 7.90 -2.91 -0.02 3.98 15 15 C 0.05 2.88 5.40 85.24 0.46 3.34 15 16 N -0.83 -44.55 13.93 21.82 0.30 -44.25 15 17 Si 0.96 42.73 24.52 68.60 1.68 44.41 15 18 H -0.26 -10.96 6.71 99.48 0.67 -10.30 15 19 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 20 H -0.26 -11.71 6.87 99.48 0.68 -11.03 15 21 C -0.27 -12.85 7.09 22.79 0.16 -12.69 15 22 H 0.06 1.32 7.65 -2.39 -0.02 1.30 15 23 H 0.06 1.33 7.65 -2.39 -0.02 1.31 15 24 H 0.12 2.04 8.14 -2.38 -0.02 2.02 15 25 H 0.15 4.34 6.26 -2.91 -0.02 4.32 15 26 H 0.14 4.64 5.08 -2.91 -0.01 4.63 15 27 H 0.30 14.30 8.30 -92.70 -0.77 13.53 15 28 H 0.11 5.51 4.76 -2.91 -0.01 5.49 15 Total: -1.00 -59.51 254.23 6.40 -53.11 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: 1.16 Total: 4.91 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 2.92 Total: -16.14 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.30 Total: -44.25 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -1.85 Total: -28.46 kcal Atomic # 9 Polarization: -15.78 SS G_CDS: 2.19 Total: -13.59 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.68 Total: 44.41 kcal Total: -59.51 6.40 -53.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309313746.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.494 kcal (2) G-P(sol) polarization free energy of solvation -59.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds