Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99381 * 2 1 4 4 H 1.48498 * 109.46925 * 272.90067 * 3 2 1 5 5 H 1.48494 * 109.47275 * 32.90641 * 3 2 1 6 6 H 1.48498 * 109.46692 * 152.90817 * 3 2 1 7 7 C 1.37876 * 120.00141 * 179.72559 * 2 1 3 8 8 H 1.08002 * 120.00193 * 353.72363 * 7 2 1 9 9 C 1.50698 * 119.99715 * 173.72191 * 7 2 1 10 10 H 1.09005 * 109.47122 * 334.96619 * 9 7 2 11 11 N 1.46900 * 109.47289 * 94.96363 * 9 7 2 12 12 C 1.50697 * 109.47116 * 214.96427 * 9 7 2 13 13 C 1.36542 * 120.91125 * 264.72369 * 12 9 7 14 14 C 1.39473 * 119.92254 * 179.77960 * 13 12 9 15 15 Cl 1.73604 * 119.14199 * 180.23283 * 14 13 12 16 16 N 1.31214 * 121.71108 * 0.48152 * 14 13 12 17 17 C 1.33682 * 121.30941 * 359.77183 * 16 14 13 18 18 C 1.40587 * 121.06210 * 180.02562 * 17 16 14 19 19 C 1.36071 * 119.75307 * 180.02562 * 18 17 16 20 20 C 1.39354 * 121.06598 * 359.95090 * 19 18 17 21 21 C 1.36148 * 120.86325 * 0.02562 * 20 19 18 22 22 C 1.40414 * 119.62284 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00456 * 0.27527 * 1 2 3 24 24 H 1.00902 * 111.00040 * 293.58799 * 11 9 7 25 25 H 1.00908 * 110.99901 * 57.54207 * 11 9 7 26 26 H 1.07994 * 120.03616 * 359.97438 * 13 12 9 27 27 H 1.07998 * 120.11976 * 0.02716 * 18 17 16 28 28 H 1.08007 * 119.47288 * 179.97438 * 19 18 17 29 29 H 1.07999 * 119.56496 * 180.02562 * 20 19 18 30 30 H 1.08003 * 120.18348 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4351 2.0819 -1.3983 5 1 1.4785 2.6342 0.7606 6 1 3.5760 1.4233 0.6376 7 6 2.0046 -1.1940 0.0057 8 1 1.4695 -2.1261 0.1124 9 6 3.5048 -1.1985 -0.1370 10 1 3.8228 -0.2959 -0.6589 11 7 4.1233 -1.2376 1.1949 12 6 3.9309 -2.4107 -0.9244 13 6 4.3245 -3.5551 -0.2921 14 6 4.7103 -4.6664 -1.0414 15 17 5.2013 -6.1130 -0.2166 16 7 4.7165 -4.6454 -2.3533 17 6 4.3473 -3.5546 -3.0324 18 6 4.3554 -3.5380 -4.4381 19 6 3.9748 -2.4131 -5.1023 20 6 3.5740 -1.2710 -4.4116 21 6 3.5528 -1.2495 -3.0505 22 6 3.9400 -2.3921 -2.3321 23 1 -0.4851 0.8400 -0.0040 24 1 3.9384 -0.3866 1.7045 25 1 3.8126 -2.0449 1.7143 26 1 4.3340 -3.6006 0.7868 27 1 4.6625 -4.4149 -4.9887 28 1 3.9831 -2.4052 -6.1823 29 1 3.2764 -0.3916 -4.9633 30 1 3.2398 -0.3585 -2.5263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309540017.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = 43.509673 kcal Electronic energy + Delta-G solvation = -17010.038012 eV Core-core repulsion = 14216.605648 eV Total energy + Delta-G solvation = -2793.432364 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.54491 -37.11306 -36.21912 -35.53010 -32.59960 -31.54283 -30.04662 -29.44351 -26.64782 -24.11366 -23.23599 -22.42203 -19.93659 -17.84371 -17.60089 -16.97718 -16.42777 -14.89521 -14.68244 -14.28989 -14.11884 -14.07430 -13.74614 -13.27917 -12.92150 -12.41661 -12.26550 -11.92813 -11.49660 -11.19338 -11.14993 -11.01184 -10.97886 -10.73146 -10.34953 -9.91988 -9.71589 -9.18176 -8.95976 -8.32627 -7.94251 -7.62263 -6.41683 -4.46862 0.76364 1.13268 2.07461 2.40601 3.02144 3.14200 3.15614 3.21362 4.08451 4.43744 4.71084 4.89971 4.93370 5.13887 5.26122 5.36821 5.45499 5.62828 5.71085 5.94236 6.04145 6.30067 6.33340 6.41115 6.55681 6.69812 6.83463 7.05084 7.13468 7.21362 7.99751 8.05072 8.09647 8.33385 8.64572 9.16585 10.70110 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.008417 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.427584 B = 3325.914760 C = 4444.024475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.083 3.917 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.208 3.792 10 H 0.062 0.938 11 N -0.854 5.854 12 C 0.058 3.942 13 C -0.175 4.175 14 C 0.218 3.782 15 Cl -0.047 7.047 16 N -0.496 5.496 17 C 0.144 3.856 18 C -0.106 4.106 19 C -0.096 4.096 20 C -0.137 4.137 21 C -0.062 4.062 22 C -0.099 4.099 23 H 0.269 0.731 24 H 0.335 0.665 25 H 0.330 0.670 26 H 0.145 0.855 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.152 -3.270 -4.824 10.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.123 4.123 3 Si 0.690 3.310 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.589 4.589 8 H 0.095 0.905 9 C 0.099 3.901 10 H 0.080 0.920 11 N -0.383 5.383 12 C 0.049 3.951 13 C -0.196 4.196 14 C 0.040 3.960 15 Cl -0.019 7.019 16 N -0.208 5.208 17 C 0.023 3.977 18 C -0.125 4.125 19 C -0.116 4.116 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.101 4.101 23 H 0.079 0.921 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.162 0.838 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.967 -4.033 -5.703 11.367 hybrid contribution -1.065 1.451 0.874 2.000 sum 7.902 -2.582 -4.829 9.614 Atomic orbital electron populations 1.69903 1.06371 1.27565 1.47496 1.25053 0.94734 0.98971 0.93570 0.87053 0.80880 0.83820 0.79253 1.19734 1.20760 1.17950 1.21427 0.89336 0.95403 1.52709 0.90527 1.18439 0.93473 0.90636 0.87599 0.92016 1.59588 1.65140 1.07649 1.05942 1.20499 0.86448 0.96084 0.92033 1.21199 1.04785 0.91823 1.01797 1.21784 0.96414 0.87888 0.89875 1.98368 1.89689 1.37708 1.76116 1.67188 1.18206 1.27909 1.07458 1.18555 0.97311 0.87982 0.93824 1.20618 1.01663 0.98948 0.91283 1.20821 0.98016 0.92814 0.99907 1.20877 1.01575 0.98617 0.94404 1.21160 0.95191 0.97629 0.94129 1.18754 1.02125 0.95374 0.93883 0.92068 0.85271 0.85809 0.83758 0.85139 0.85682 0.85792 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 13.96 55.43 0.77 -23.83 16 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.86 18.83 26.59 -169.99 -4.52 14.31 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.26 -5.23 6.06 56.52 0.34 -4.89 16 7 C -0.55 -13.86 9.11 -34.44 -0.31 -14.17 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C 0.21 4.47 1.92 -70.02 -0.13 4.34 16 10 H 0.06 1.34 4.37 -51.93 -0.23 1.12 16 11 N -0.85 -16.48 8.77 -6.65 -0.06 -16.54 16 12 C 0.06 1.20 5.08 -104.27 -0.53 0.67 16 13 C -0.17 -3.32 9.04 -39.73 -0.36 -3.68 16 14 C 0.22 4.04 7.26 -17.36 -0.13 3.91 16 15 Cl -0.05 -0.73 29.08 -51.86 -1.51 -2.24 16 16 N -0.50 -9.51 10.31 -8.10 -0.08 -9.60 16 17 C 0.14 2.73 6.60 -84.86 -0.56 2.17 16 18 C -0.11 -1.67 9.98 -39.47 -0.39 -2.06 16 19 C -0.10 -1.32 9.94 -39.94 -0.40 -1.72 16 20 C -0.14 -2.08 9.96 -39.92 -0.40 -2.48 16 21 C -0.06 -1.16 9.31 -39.51 -0.37 -1.52 16 22 C -0.10 -1.97 5.74 -106.80 -0.61 -2.59 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 24 H 0.33 6.37 7.75 -39.29 -0.30 6.07 16 25 H 0.33 6.01 7.40 -39.29 -0.29 5.72 16 26 H 0.14 2.52 6.42 -52.49 -0.34 2.18 16 27 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.13 2.59 6.57 -52.48 -0.34 2.25 16 LS Contribution 271.45 15.07 4.09 4.09 Total: -1.00 -27.88 271.45 -7.99 -35.87 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -2.39 Total: 13.03 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -4.29 Total: -15.10 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.63 Total: -49.96 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.52 Total: 14.31 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.51 Total: -2.24 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.88 -7.99 -35.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309540017.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.377 kcal (2) G-P(sol) polarization free energy of solvation -27.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds