Wall clock time and date at job start Mon Mar 30 2020 06:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99381 * 2 1 4 4 H 1.48498 * 109.46925 * 272.90067 * 3 2 1 5 5 H 1.48494 * 109.47275 * 32.90641 * 3 2 1 6 6 H 1.48498 * 109.46692 * 152.90817 * 3 2 1 7 7 C 1.37876 * 120.00141 * 179.72559 * 2 1 3 8 8 H 1.08002 * 120.00193 * 353.72363 * 7 2 1 9 9 C 1.50698 * 119.99715 * 173.72191 * 7 2 1 10 10 H 1.09005 * 109.47122 * 334.96619 * 9 7 2 11 11 N 1.46900 * 109.47289 * 94.96363 * 9 7 2 12 12 C 1.50697 * 109.47116 * 214.96427 * 9 7 2 13 13 C 1.36542 * 120.91125 * 264.72369 * 12 9 7 14 14 C 1.39473 * 119.92254 * 179.77960 * 13 12 9 15 15 Cl 1.73604 * 119.14199 * 180.23283 * 14 13 12 16 16 N 1.31214 * 121.71108 * 0.48152 * 14 13 12 17 17 C 1.33682 * 121.30941 * 359.77183 * 16 14 13 18 18 C 1.40587 * 121.06210 * 180.02562 * 17 16 14 19 19 C 1.36071 * 119.75307 * 180.02562 * 18 17 16 20 20 C 1.39354 * 121.06598 * 359.95090 * 19 18 17 21 21 C 1.36148 * 120.86325 * 0.02562 * 20 19 18 22 22 C 1.40414 * 119.62284 * 0.02562 * 21 20 19 23 23 H 0.96998 * 120.00456 * 0.27527 * 1 2 3 24 24 H 1.00902 * 111.00040 * 293.58799 * 11 9 7 25 25 H 1.00908 * 110.99901 * 57.54207 * 11 9 7 26 26 H 1.07994 * 120.03616 * 359.97438 * 13 12 9 27 27 H 1.07998 * 120.11976 * 0.02716 * 18 17 16 28 28 H 1.08007 * 119.47288 * 179.97438 * 19 18 17 29 29 H 1.07999 * 119.56496 * 180.02562 * 20 19 18 30 30 H 1.08003 * 120.18348 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4351 2.0819 -1.3983 5 1 1.4785 2.6342 0.7606 6 1 3.5760 1.4233 0.6376 7 6 2.0046 -1.1940 0.0057 8 1 1.4695 -2.1261 0.1124 9 6 3.5048 -1.1985 -0.1370 10 1 3.8228 -0.2959 -0.6589 11 7 4.1233 -1.2376 1.1949 12 6 3.9309 -2.4107 -0.9244 13 6 4.3245 -3.5551 -0.2921 14 6 4.7103 -4.6664 -1.0414 15 17 5.2013 -6.1130 -0.2166 16 7 4.7165 -4.6454 -2.3533 17 6 4.3473 -3.5546 -3.0324 18 6 4.3554 -3.5380 -4.4381 19 6 3.9748 -2.4131 -5.1023 20 6 3.5740 -1.2710 -4.4116 21 6 3.5528 -1.2495 -3.0505 22 6 3.9400 -2.3921 -2.3321 23 1 -0.4851 0.8400 -0.0040 24 1 3.9384 -0.3866 1.7045 25 1 3.8126 -2.0449 1.7143 26 1 4.3340 -3.6006 0.7868 27 1 4.6625 -4.4149 -4.9887 28 1 3.9831 -2.4052 -6.1823 29 1 3.2764 -0.3916 -4.9633 30 1 3.2398 -0.3585 -2.5263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309540017.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:41 Heat of formation + Delta-G solvation = 24.904392 kcal Electronic energy + Delta-G solvation = -17010.844797 eV Core-core repulsion = 14216.605648 eV Total energy + Delta-G solvation = -2794.239150 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92934 -38.42498 -37.69585 -37.00073 -34.43844 -33.10092 -31.39904 -30.80008 -28.45218 -25.66742 -24.61200 -23.88288 -21.47159 -19.46432 -19.12261 -18.48144 -17.90683 -16.55804 -16.20049 -15.73181 -15.52785 -15.42322 -15.11869 -14.87363 -14.65497 -13.91194 -13.59863 -13.49669 -13.13722 -12.86317 -12.57032 -12.35558 -12.27026 -12.02180 -11.98034 -11.81262 -11.25322 -10.90646 -10.63218 -9.66629 -9.50024 -9.10869 -8.41475 -6.51150 -0.61360 -0.22752 0.70318 1.01008 1.29642 1.35192 1.44376 1.89636 2.23518 2.92676 3.08297 3.37257 3.54157 3.75993 3.90992 4.07416 4.11720 4.33142 4.36992 4.49797 4.57873 4.84236 5.01696 5.07521 5.19734 5.29070 5.40105 5.50465 5.60550 5.89877 6.05690 6.40270 6.54164 6.62836 6.76088 7.16764 8.74365 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.008417 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.427584 B = 3325.914760 C = 4444.024475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.031 3.969 3 Si 0.929 3.071 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.234 1.234 7 C -0.544 4.544 8 H 0.026 0.974 9 C 0.219 3.781 10 H 0.063 0.937 11 N -0.843 5.843 12 C 0.028 3.972 13 C -0.176 4.176 14 C 0.205 3.795 15 Cl -0.023 7.023 16 N -0.499 5.499 17 C 0.120 3.880 18 C -0.110 4.110 19 C -0.081 4.081 20 C -0.119 4.119 21 C -0.099 4.099 22 C -0.118 4.118 23 H 0.270 0.730 24 H 0.338 0.662 25 H 0.336 0.664 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.830 -2.831 -6.649 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.170 4.170 3 Si 0.752 3.248 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.157 1.157 7 C -0.584 4.584 8 H 0.045 0.955 9 C 0.109 3.891 10 H 0.080 0.920 11 N -0.372 5.372 12 C 0.020 3.980 13 C -0.197 4.197 14 C 0.026 3.974 15 Cl 0.006 6.994 16 N -0.211 5.211 17 C -0.001 4.001 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.137 4.137 21 C -0.117 4.117 22 C -0.120 4.120 23 H 0.080 0.920 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.171 0.829 27 H 0.172 0.828 28 H 0.191 0.809 29 H 0.174 0.826 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.672 -3.613 -7.520 13.546 hybrid contribution -1.591 1.177 1.355 2.398 sum 9.081 -2.436 -6.165 11.243 Atomic orbital electron populations 1.70054 1.08408 1.28587 1.49868 1.25871 0.95324 1.02763 0.93019 0.86012 0.80226 0.78720 0.79889 1.18564 1.21083 1.15687 1.21486 0.91406 0.93401 1.52063 0.95512 1.18206 0.90847 0.91506 0.88582 0.91974 1.59529 1.64292 1.08130 1.05271 1.20524 0.88424 0.96214 0.92877 1.21316 1.04371 0.91780 1.02281 1.21927 0.96752 0.88760 0.89942 1.98365 1.89385 1.36049 1.75607 1.67274 1.18011 1.28137 1.07683 1.19029 0.98004 0.87652 0.95385 1.21002 1.01275 1.00617 0.89911 1.21324 0.95373 0.91134 1.02162 1.21335 0.98854 1.00239 0.93228 1.21183 0.97812 0.96994 0.95755 1.18974 1.02768 0.96506 0.93799 0.92039 0.84914 0.85170 0.82934 0.82834 0.80874 0.82609 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.96 21.45 0.30 -53.79 16 2 C 0.03 1.65 5.47 84.65 0.46 2.11 16 3 Si 0.93 38.94 26.59 68.60 1.82 40.76 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.23 -8.88 6.06 99.48 0.60 -8.28 16 7 C -0.54 -28.47 9.11 25.60 0.23 -28.24 16 8 H 0.03 1.62 8.06 -2.91 -0.02 1.60 16 9 C 0.22 9.51 1.92 43.42 0.08 9.59 16 10 H 0.06 2.68 4.37 -2.38 -0.01 2.67 16 11 N -0.84 -32.26 8.77 -174.95 -1.53 -33.79 16 12 C 0.03 1.19 5.08 -19.64 -0.10 1.09 16 13 C -0.18 -6.79 9.04 22.17 0.20 -6.59 16 14 C 0.20 7.52 7.26 85.08 0.62 8.13 16 15 Cl -0.02 -0.68 29.08 -2.72 -0.08 -0.76 16 16 N -0.50 -18.80 10.31 -179.53 -1.85 -20.65 16 17 C 0.12 4.43 6.60 40.29 0.27 4.70 16 18 C -0.11 -3.11 9.98 22.34 0.22 -2.89 16 19 C -0.08 -1.89 9.94 22.03 0.22 -1.67 16 20 C -0.12 -3.26 9.96 22.05 0.22 -3.04 16 21 C -0.10 -3.59 9.31 22.31 0.21 -3.38 16 22 C -0.12 -4.71 5.74 -21.27 -0.12 -4.84 16 23 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 24 H 0.34 12.51 7.75 -89.69 -0.70 11.81 16 25 H 0.34 12.28 7.40 -89.69 -0.66 11.61 16 26 H 0.15 5.38 6.42 -2.91 -0.02 5.36 16 27 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 28 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 30 H 0.12 4.59 6.57 -2.91 -0.02 4.57 16 Total: -1.00 -62.75 271.45 0.92 -61.83 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.25 Total: 31.41 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 2.51 Total: -25.02 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -3.09 Total: -108.23 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.82 Total: 40.76 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -62.75 0.92 -61.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309540017.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.733 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds