Wall clock time and date at job start Mon Mar 30 2020 06:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00048 * 2 1 4 4 H 1.48507 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47213 * 299.99776 * 3 2 1 6 6 H 1.48492 * 109.47397 * 60.00047 * 3 2 1 7 7 C 1.37880 * 119.99846 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00254 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47279 * 180.02562 * 9 7 2 11 11 C 1.38679 * 119.99988 * 180.02562 * 10 9 7 12 12 C 1.40240 * 119.23258 * 359.97438 * 11 10 9 13 13 C 1.36225 * 119.87796 * 179.97438 * 12 11 10 14 14 C 1.40967 * 118.29230 * 0.02562 * 13 12 11 15 15 C 1.40455 * 121.25648 * 179.97438 * 14 13 12 16 16 Cl 1.73601 * 120.19366 * 0.02562 * 15 14 13 17 17 C 1.36346 * 119.61421 * 180.02562 * 15 14 13 18 18 C 1.39250 * 120.82958 * 359.68890 * 17 15 14 19 19 C 1.36150 * 121.04750 * 0.62551 * 18 17 15 20 20 C 1.40526 * 119.79266 * 359.39657 * 19 18 17 21 21 N 1.31719 * 119.23085 * 179.97438 * 11 10 9 22 22 H 0.96998 * 120.00241 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.47004 * 59.99784 * 9 7 2 24 24 H 1.09008 * 109.46810 * 300.00472 * 9 7 2 25 25 H 0.97002 * 119.99605 * 359.97438 * 10 9 7 26 26 H 1.08001 * 120.05644 * 359.97438 * 12 11 10 27 27 H 1.08002 * 120.85546 * 180.02562 * 13 12 11 28 28 H 1.07996 * 119.58246 * 180.02562 * 17 15 14 29 29 H 1.07997 * 119.47409 * 180.32620 * 18 17 15 30 30 H 1.08002 * 120.10630 * 179.68013 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7407 -4.9202 -0.0011 12 6 0.3586 -5.1579 -0.0011 13 6 -0.1099 -6.4371 -0.0021 14 6 0.8258 -7.4914 -0.0026 15 6 0.4116 -8.8335 -0.0032 16 17 -1.2797 -9.2252 -0.0039 17 6 1.3455 -9.8269 -0.0031 18 6 2.7055 -9.5278 -0.0091 19 6 3.1408 -8.2378 -0.0023 20 6 2.2085 -7.1863 -0.0020 21 7 2.6100 -5.9098 -0.0016 22 1 -0.4850 0.8400 -0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 3.1567 -3.4354 -0.0009 26 1 -0.3330 -4.3284 -0.0002 27 1 -1.1710 -6.6383 -0.0025 28 1 1.0264 -10.8586 -0.0040 29 1 3.4264 -10.3319 -0.0143 30 1 4.1993 -8.0232 -0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309607130.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:33 Heat of formation + Delta-G solvation = 41.266128 kcal Electronic energy + Delta-G solvation = -16137.335140 eV Core-core repulsion = 13343.805488 eV Total energy + Delta-G solvation = -2793.529651 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.48267 -37.65524 -36.41891 -34.73470 -33.04027 -32.55741 -29.69901 -29.45591 -26.84717 -23.88998 -23.23077 -21.88311 -21.74804 -17.79594 -17.74706 -17.07087 -16.12335 -15.11568 -14.82978 -14.53389 -14.48129 -14.43755 -13.30049 -13.25222 -13.00509 -12.99273 -12.22656 -12.14363 -11.81539 -11.57391 -11.22126 -10.99695 -10.95653 -10.79828 -10.32486 -10.14971 -9.55594 -9.33736 -9.10210 -8.65353 -8.14988 -7.01985 -6.32621 -4.38576 0.61638 1.21287 2.10951 2.21869 3.16692 3.17397 3.24826 3.28312 3.86306 4.26575 4.42770 4.77270 4.86550 4.99271 5.05628 5.16392 5.30771 5.37227 5.54673 5.85668 6.06113 6.11372 6.22265 6.43648 6.51137 6.59788 6.80560 7.04190 7.18852 7.46943 7.69817 7.77829 8.40216 8.54499 8.78939 9.28760 10.77932 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.038225 B = 0.004099 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.326981 B = 6829.083540 C = 7546.265246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.247 3.753 10 N -0.687 5.687 11 C 0.438 3.562 12 C -0.199 4.199 13 C -0.032 4.032 14 C -0.163 4.163 15 C 0.014 3.986 16 Cl -0.076 7.076 17 C -0.150 4.150 18 C -0.085 4.085 19 C -0.114 4.114 20 C 0.205 3.795 21 N -0.572 5.572 22 H 0.267 0.733 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.401 0.599 26 H 0.144 0.856 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.475 -16.552 -0.011 16.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.126 3.874 10 N -0.313 5.313 11 C 0.187 3.813 12 C -0.222 4.222 13 C -0.057 4.057 14 C -0.168 4.168 15 C -0.013 4.013 16 Cl -0.047 7.047 17 C -0.170 4.170 18 C -0.105 4.105 19 C -0.134 4.134 20 C 0.079 3.921 21 N -0.296 5.296 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.236 0.764 26 H 0.162 0.838 27 H 0.156 0.844 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.876 -16.054 -0.011 16.078 hybrid contribution -0.375 0.838 -0.001 0.918 sum 0.501 -15.216 -0.012 15.224 Atomic orbital electron populations 1.69935 1.06115 1.27542 1.48940 1.24918 0.94968 0.99569 0.94369 0.86304 0.79954 0.82562 0.77837 1.19513 1.20685 1.20681 1.21181 0.93599 0.89968 1.53273 0.91558 1.19352 0.88520 0.82248 0.97277 1.45572 1.11109 1.01533 1.73053 1.18850 0.88793 0.86771 0.86886 1.21565 0.95434 0.98363 1.06838 1.21232 0.99459 0.91422 0.93598 1.18372 0.94785 0.92304 1.11362 1.20612 0.84439 0.93435 1.02838 1.98346 1.15557 1.93982 1.96790 1.20540 0.92417 0.98510 1.05542 1.20643 0.94707 0.96477 0.98699 1.20735 0.99545 0.90931 1.02208 1.18406 0.89495 0.90679 0.93510 1.67718 1.36284 0.98016 1.27575 0.92323 0.95384 0.95390 0.76392 0.83806 0.84438 0.85398 0.85207 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.25 29.54 -169.99 -5.02 15.22 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.06 9.28 -34.44 -0.32 -14.38 16 8 H 0.07 1.67 7.60 -52.49 -0.40 1.27 16 9 C 0.25 5.90 4.62 -5.19 -0.02 5.88 16 10 N -0.69 -14.39 5.71 -61.54 -0.35 -14.75 16 11 C 0.44 8.65 7.63 -155.49 -1.19 7.46 16 12 C -0.20 -3.59 9.23 -39.55 -0.36 -3.95 16 13 C -0.03 -0.51 9.51 -39.27 -0.37 -0.89 16 14 C -0.16 -2.61 5.75 -106.75 -0.61 -3.22 16 15 C 0.01 0.19 6.32 -39.43 -0.25 -0.06 16 16 Cl -0.08 -0.92 27.54 -51.86 -1.43 -2.35 16 17 C -0.15 -1.76 9.73 -39.89 -0.39 -2.15 16 18 C -0.09 -0.96 9.94 -39.96 -0.40 -1.36 16 19 C -0.11 -1.58 9.98 -39.47 -0.39 -1.97 16 20 C 0.20 3.48 6.60 -84.86 -0.56 2.92 16 21 N -0.57 -10.94 10.37 -10.21 -0.11 -11.04 16 22 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 23 H 0.03 0.71 7.90 -51.93 -0.41 0.30 16 24 H 0.03 0.71 7.90 -51.92 -0.41 0.30 16 25 H 0.40 8.11 8.44 -40.82 -0.34 7.77 16 26 H 0.14 2.59 6.62 -52.49 -0.35 2.24 16 27 H 0.14 1.89 7.05 -52.49 -0.37 1.52 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 279.77 15.07 4.22 4.22 Total: -1.00 -27.50 279.77 -9.60 -37.11 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -2.68 Total: 5.38 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -4.97 Total: -10.08 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: 0.28 Total: -49.50 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.43 Total: -2.35 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.50 -9.60 -37.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309607130.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.375 kcal (2) G-P(sol) polarization free energy of solvation -27.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds