Wall clock time and date at job start Mon Mar 30 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47391 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47641 * 300.00426 * 3 2 1 6 6 H 1.48500 * 109.47188 * 60.00466 * 3 2 1 7 7 C 1.37874 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00063 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.31194 * 120.00433 * 114.01491 * 10 9 7 12 12 C 1.46315 * 119.75034 * 353.17779 * 11 10 9 13 13 C 1.35125 * 119.68469 * 180.02562 * 12 11 10 14 14 C 1.46621 * 119.18393 * 359.97438 * 13 12 11 15 15 C 1.39938 * 120.46952 * 179.97438 * 14 13 12 16 16 C 1.36602 * 119.88777 * 180.02562 * 15 14 13 17 17 C 1.38862 * 120.51455 * 0.25991 * 16 15 14 18 18 Cl 1.73606 * 119.72786 * 179.72303 * 17 16 15 19 19 C 1.38007 * 120.54682 * 359.47927 * 17 16 15 20 20 C 1.39077 * 119.83996 * 0.51191 * 19 17 16 21 21 N 1.37452 * 119.75719 * 173.15609 * 11 10 9 22 22 H 0.97000 * 119.66457 * 0.02562 * 21 11 10 23 23 H 0.97002 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47447 * 60.00075 * 9 7 2 25 25 H 1.09000 * 109.47498 * 300.00381 * 9 7 2 26 26 H 1.07993 * 120.16077 * 359.97438 * 12 11 10 27 27 H 1.07996 * 120.41108 * 180.02562 * 13 12 11 28 28 H 1.08001 * 120.05658 * 0.04805 * 15 14 13 29 29 H 1.08001 * 119.74586 * 179.97438 * 16 15 14 30 30 H 1.07999 * 120.08498 * 180.26033 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2778 -4.4117 1.0372 12 6 1.5191 -4.1010 2.2491 13 6 1.5976 -4.9247 3.3174 14 6 2.4451 -6.1186 3.2389 15 6 2.5466 -6.9897 4.3294 16 6 3.3401 -8.0983 4.2434 17 6 4.0532 -8.3667 3.0825 18 17 5.0612 -9.7777 2.9982 19 6 3.9635 -7.5237 1.9935 20 6 3.1611 -6.3898 2.0604 21 7 3.0680 -5.5349 0.9778 22 1 3.5659 -5.7293 0.1684 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.9000 -3.2171 2.2900 27 1 1.0423 -4.7068 4.2177 28 1 1.9982 -6.7861 5.2372 29 1 3.4170 -8.7689 5.0866 30 1 4.5181 -7.7419 1.0929 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335621065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:00 Heat of formation + Delta-G solvation = 56.583105 kcal Electronic energy + Delta-G solvation = -16091.327535 eV Core-core repulsion = 13298.462078 eV Total energy + Delta-G solvation = -2792.865457 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.35649 -37.58826 -36.38275 -34.32366 -33.40294 -32.30356 -30.10951 -29.02350 -26.71989 -23.55215 -23.09241 -22.80760 -21.04899 -18.09720 -17.88371 -16.38869 -16.32619 -15.46099 -15.16858 -14.60183 -14.40100 -14.21469 -13.96393 -13.25093 -13.05708 -12.78698 -12.37739 -11.93765 -11.52796 -11.35235 -11.23196 -11.08973 -10.94398 -10.78426 -10.39689 -10.16853 -9.76151 -8.99983 -8.69287 -8.50890 -8.13858 -6.91949 -6.10055 -4.15460 0.65254 1.27061 1.94504 2.08141 3.23945 3.25710 3.27191 3.33595 3.40269 4.09203 4.39474 4.56207 4.76854 4.91772 5.05785 5.13589 5.21083 5.24914 5.59724 5.77059 5.79559 6.00005 6.13726 6.25101 6.52640 6.58195 6.70732 7.07116 7.36471 7.47284 7.71584 7.84960 8.19453 8.79369 9.01079 9.50037 10.97301 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.043651 B = 0.003810 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.291528 B = 7346.647353 C = 7579.939150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.187 3.813 10 N -0.550 5.550 11 C 0.349 3.651 12 C -0.132 4.132 13 C -0.096 4.096 14 C -0.116 4.116 15 C -0.051 4.051 16 C -0.161 4.161 17 C 0.011 3.989 18 Cl -0.074 7.074 19 C -0.174 4.174 20 C 0.226 3.774 21 N -0.624 5.624 22 H 0.414 0.586 23 H 0.263 0.737 24 H 0.046 0.954 25 H 0.012 0.988 26 H 0.158 0.842 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.438 -16.846 9.470 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.060 3.940 10 N -0.270 5.270 11 C 0.074 3.926 12 C -0.153 4.153 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.070 4.070 16 C -0.182 4.182 17 C -0.017 4.017 18 Cl -0.046 7.046 19 C -0.198 4.198 20 C 0.119 3.881 21 N -0.245 5.245 22 H 0.252 0.748 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.175 0.825 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.149 0.851 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.593 -16.444 8.520 19.346 hybrid contribution 0.278 0.943 0.276 1.021 sum 5.871 -15.501 8.796 18.765 Atomic orbital electron populations 1.69952 1.06004 1.26977 1.50580 1.24990 0.94962 0.99372 0.95118 0.86381 0.80061 0.83007 0.77672 1.19685 1.20800 1.20867 1.21158 0.93529 0.89512 1.50792 0.92070 1.19894 0.90017 0.86831 0.97304 1.72121 1.22219 1.07893 1.24726 1.19806 0.92010 0.88313 0.92477 1.23127 0.99281 1.00696 0.92240 1.22047 0.98005 0.92862 0.98956 1.18678 1.01784 0.98218 0.93372 1.20750 0.96572 0.92365 0.97305 1.20480 1.00467 0.99909 0.97361 1.20598 0.95902 0.89696 0.95472 1.98365 1.67883 1.39791 1.98515 1.20364 1.04293 0.95348 0.99764 1.17597 0.93757 0.89387 0.87326 1.41314 1.46918 1.21311 1.14945 0.74845 0.92724 0.93673 0.97076 0.82495 0.84880 0.84568 0.85092 0.84525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.72 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.19 4.98 5.94 -5.20 -0.03 4.95 16 10 N -0.55 -12.96 10.63 -60.11 -0.64 -13.60 16 11 C 0.35 6.89 7.78 -154.62 -1.20 5.68 16 12 C -0.13 -2.37 9.29 -37.44 -0.35 -2.72 16 13 C -0.10 -1.36 10.02 -37.31 -0.37 -1.74 16 14 C -0.12 -1.55 5.87 -105.02 -0.62 -2.17 16 15 C -0.05 -0.54 9.75 -39.54 -0.39 -0.92 16 16 C -0.16 -1.63 9.75 -39.94 -0.39 -2.02 16 17 C 0.01 0.12 6.32 -39.44 -0.25 -0.13 16 18 Cl -0.07 -0.74 28.94 -51.86 -1.50 -2.24 16 19 C -0.17 -2.06 9.66 -39.36 -0.38 -2.44 16 20 C 0.23 3.15 6.65 -83.79 -0.56 2.60 16 21 N -0.62 -9.93 5.44 -8.66 -0.05 -9.98 16 22 H 0.41 5.90 8.79 -40.82 -0.36 5.54 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 24 H 0.05 1.30 8.14 -51.93 -0.42 0.87 16 25 H 0.01 0.30 5.20 -51.93 -0.27 0.03 16 26 H 0.16 3.05 5.85 -52.49 -0.31 2.75 16 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 281.35 15.07 4.24 4.24 Total: -1.00 -30.93 281.35 -9.78 -40.71 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -2.59 Total: 2.09 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -4.95 Total: -12.42 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.05 Total: -49.02 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.93 -9.78 -40.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335621065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.289 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds