Wall clock time and date at job start Mon Mar 30 2020 06:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00004 * 2 1 4 4 H 1.48501 * 109.47391 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47641 * 300.00426 * 3 2 1 6 6 H 1.48500 * 109.47188 * 60.00466 * 3 2 1 7 7 C 1.37874 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00063 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.31194 * 120.00433 * 114.01491 * 10 9 7 12 12 C 1.46315 * 119.75034 * 353.17779 * 11 10 9 13 13 C 1.35125 * 119.68469 * 180.02562 * 12 11 10 14 14 C 1.46621 * 119.18393 * 359.97438 * 13 12 11 15 15 C 1.39938 * 120.46952 * 179.97438 * 14 13 12 16 16 C 1.36602 * 119.88777 * 180.02562 * 15 14 13 17 17 C 1.38862 * 120.51455 * 0.25991 * 16 15 14 18 18 Cl 1.73606 * 119.72786 * 179.72303 * 17 16 15 19 19 C 1.38007 * 120.54682 * 359.47927 * 17 16 15 20 20 C 1.39077 * 119.83996 * 0.51191 * 19 17 16 21 21 N 1.37452 * 119.75719 * 173.15609 * 11 10 9 22 22 H 0.97000 * 119.66457 * 0.02562 * 21 11 10 23 23 H 0.97002 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47447 * 60.00075 * 9 7 2 25 25 H 1.09000 * 109.47498 * 300.00381 * 9 7 2 26 26 H 1.07993 * 120.16077 * 359.97438 * 12 11 10 27 27 H 1.07996 * 120.41108 * 180.02562 * 13 12 11 28 28 H 1.08001 * 120.05658 * 0.04805 * 15 14 13 29 29 H 1.08001 * 119.74586 * 179.97438 * 16 15 14 30 30 H 1.07999 * 120.08498 * 180.26033 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2778 -4.4117 1.0372 12 6 1.5191 -4.1010 2.2491 13 6 1.5976 -4.9247 3.3174 14 6 2.4451 -6.1186 3.2389 15 6 2.5466 -6.9897 4.3294 16 6 3.3401 -8.0983 4.2434 17 6 4.0532 -8.3667 3.0825 18 17 5.0612 -9.7777 2.9982 19 6 3.9635 -7.5237 1.9935 20 6 3.1611 -6.3898 2.0604 21 7 3.0680 -5.5349 0.9778 22 1 3.5659 -5.7293 0.1684 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 0.9000 -3.2171 2.2900 27 1 1.0423 -4.7068 4.2177 28 1 1.9982 -6.7861 5.2372 29 1 3.4170 -8.7689 5.0866 30 1 4.5181 -7.7419 1.0929 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335621065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:00 Heat of formation + Delta-G solvation = 36.953401 kcal Electronic energy + Delta-G solvation = -16092.178743 eV Core-core repulsion = 13298.462078 eV Total energy + Delta-G solvation = -2793.716665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49326 -38.74355 -37.37400 -35.91524 -34.73399 -34.10123 -31.18792 -30.38498 -28.49364 -25.15326 -24.48015 -23.80081 -22.52357 -19.34769 -19.01361 -18.49137 -17.58535 -16.75967 -16.44098 -16.14339 -15.62946 -15.57527 -15.01841 -14.59427 -14.50945 -14.00552 -13.87813 -13.54987 -12.95939 -12.72379 -12.55823 -12.40542 -12.35600 -12.21387 -11.91265 -11.79684 -11.39889 -10.76530 -10.36400 -9.90211 -9.50826 -8.46641 -8.12097 -6.39475 -0.42743 0.27991 0.87634 1.04833 1.36000 1.37221 1.50983 1.96273 2.05616 2.38267 2.91504 3.03605 3.57055 3.66123 3.77444 4.07886 4.11527 4.22758 4.40002 4.71344 4.73608 4.83901 5.08526 5.14871 5.22400 5.26691 5.39922 5.47823 5.64376 5.70152 6.03696 6.14354 6.31850 6.70133 7.20596 7.42808 8.83178 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.043651 B = 0.003810 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.291528 B = 7346.647353 C = 7579.939150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.046 0.954 9 C 0.205 3.795 10 N -0.616 5.616 11 C 0.374 3.626 12 C -0.200 4.200 13 C -0.036 4.036 14 C -0.145 4.145 15 C -0.032 4.032 16 C -0.152 4.152 17 C 0.013 3.987 18 Cl -0.060 7.060 19 C -0.174 4.174 20 C 0.203 3.797 21 N -0.618 5.618 22 H 0.419 0.581 23 H 0.269 0.731 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.131 0.869 27 H 0.173 0.827 28 H 0.175 0.825 29 H 0.163 0.837 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -18.860 12.465 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.077 3.923 10 N -0.339 5.339 11 C 0.100 3.900 12 C -0.222 4.222 13 C -0.059 4.059 14 C -0.149 4.149 15 C -0.050 4.050 16 C -0.172 4.172 17 C -0.015 4.015 18 Cl -0.031 7.031 19 C -0.196 4.196 20 C 0.099 3.901 21 N -0.239 5.239 22 H 0.257 0.743 23 H 0.078 0.922 24 H 0.022 0.978 25 H 0.020 0.980 26 H 0.149 0.851 27 H 0.190 0.810 28 H 0.192 0.808 29 H 0.180 0.820 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.828 -18.533 11.551 22.880 hybrid contribution 0.021 1.115 -0.379 1.178 sum 6.848 -17.419 11.171 21.797 Atomic orbital electron populations 1.70061 1.07462 1.28209 1.50889 1.25900 0.95916 1.03003 0.94267 0.85292 0.78453 0.78244 0.78353 1.19628 1.19825 1.19378 1.21415 0.93005 0.91371 1.51533 0.93557 1.19393 0.90142 0.87880 0.94896 1.72006 1.24930 1.09674 1.27323 1.20125 0.90324 0.87473 0.92050 1.22802 1.03051 1.02613 0.93735 1.22534 0.94514 0.90659 0.98164 1.18938 1.02607 0.98920 0.94479 1.21152 0.95606 0.90999 0.97249 1.20910 0.98838 0.99812 0.97661 1.20837 0.95546 0.89679 0.95447 1.98383 1.67411 1.38813 1.98486 1.20511 1.03722 0.94608 1.00802 1.17928 0.95195 0.89904 0.87107 1.41317 1.46093 1.20416 1.16100 0.74281 0.92221 0.97820 0.97952 0.85137 0.80985 0.80771 0.81985 0.83323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.53 -32.76 9.39 25.60 0.24 -32.52 16 8 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 9 C 0.21 11.95 5.94 85.63 0.51 12.46 16 10 N -0.62 -31.46 10.63 -344.10 -3.66 -35.12 16 11 C 0.37 15.59 7.78 135.83 1.06 16.64 16 12 C -0.20 -7.49 9.29 23.65 0.22 -7.27 16 13 C -0.04 -0.96 10.02 23.74 0.24 -0.72 16 14 C -0.14 -3.44 5.87 -20.12 -0.12 -3.55 16 15 C -0.03 -0.50 9.75 22.30 0.22 -0.28 16 16 C -0.15 -2.24 9.75 22.04 0.21 -2.03 16 17 C 0.01 0.23 6.32 22.36 0.14 0.37 16 18 Cl -0.06 -0.97 28.94 -2.72 -0.08 -1.05 16 19 C -0.17 -3.66 9.66 22.42 0.22 -3.44 16 20 C 0.20 5.33 6.65 38.89 0.26 5.59 16 21 N -0.62 -19.99 5.44 -181.30 -0.99 -20.98 16 22 H 0.42 12.33 8.79 -92.71 -0.82 11.51 16 23 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 24 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.00 0.17 5.20 -2.39 -0.01 0.15 16 26 H 0.13 5.54 5.85 -2.91 -0.02 5.52 16 27 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 28 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 29 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 30 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -72.35 281.35 1.61 -70.74 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.37 Total: 8.67 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 3.66 Total: -13.81 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.36 Total: -112.15 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -72.35 1.61 -70.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335621065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.694 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds