Wall clock time and date at job start Mon Mar 30 2020 06:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36012 * 116.99646 * 2 1 4 4 C 1.38711 * 120.02432 * 359.97438 * 3 2 1 5 5 C 1.38764 * 120.54189 * 179.97438 * 4 3 2 6 6 C 1.36496 * 120.57837 * 359.76119 * 5 4 3 7 7 C 1.40772 * 120.02223 * 0.51377 * 6 5 4 8 8 C 1.41178 * 120.26379 * 179.73756 * 7 6 5 9 9 H 1.08008 * 119.99690 * 204.69554 * 8 7 6 10 10 C 1.39918 * 120.00229 * 24.42362 * 8 7 6 11 11 N 1.30867 * 119.99877 * 17.99088 * 10 8 7 12 12 Si 1.86796 * 120.00063 * 197.99958 * 10 8 7 13 13 H 1.48501 * 109.47342 * 89.99802 * 12 10 8 14 14 H 1.48501 * 109.46948 * 209.99756 * 12 10 8 15 15 H 1.48497 * 109.47271 * 329.99447 * 12 10 8 16 16 C 1.38872 * 120.02277 * 179.97438 * 3 2 1 17 17 O 1.35751 * 120.28416 * 0.02562 * 16 3 2 18 18 C 1.42898 * 116.99671 * 269.97559 * 17 16 3 19 19 F 1.39902 * 109.47122 * 60.00038 * 18 17 16 20 20 F 1.39904 * 109.46738 * 179.97438 * 18 17 16 21 21 F 1.39891 * 109.47121 * 299.99539 * 18 17 16 22 22 H 1.09001 * 109.46657 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47235 * 299.99962 * 1 2 3 24 24 H 1.08996 * 109.47178 * 60.00060 * 1 2 3 25 25 H 1.08009 * 119.72399 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.71237 * 180.02562 * 5 4 3 27 27 H 1.08004 * 119.98889 * 180.25536 * 6 5 4 28 28 H 0.97005 * 120.00325 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2914 2.3755 -0.0005 5 6 1.9101 3.6176 0.0000 6 6 3.2716 3.7152 0.0059 7 6 4.0613 2.5498 0.0007 8 6 5.4698 2.6449 0.0012 9 1 6.0658 1.8351 -0.3932 10 6 6.0936 3.7904 0.5075 11 7 5.4306 4.6061 1.2871 12 14 7.8726 4.1557 0.0705 13 1 7.9200 4.9782 -1.1650 14 1 8.5134 4.8991 1.1849 15 1 8.5987 2.8802 -0.1557 16 6 3.4332 1.2852 0.0005 17 8 4.1787 0.1508 0.0005 18 6 4.5350 -0.3914 1.2738 19 9 3.3739 -0.7045 1.9887 20 9 5.2962 -1.5508 1.0905 21 9 5.2831 0.5500 1.9886 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 0.2131 2.3142 -0.0005 26 1 1.3092 4.5150 0.0000 27 1 3.7431 4.6868 0.0105 28 1 5.8628 5.4005 1.6378 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380480374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:14 Heat of formation + Delta-G solvation = -238.742506 kcal Electronic energy + Delta-G solvation = -20604.566115 eV Core-core repulsion = 16784.035722 eV Total energy + Delta-G solvation = -3820.530393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.92071 -48.72775 -48.54525 -40.94334 -38.93718 -37.70355 -35.45932 -31.55914 -30.52356 -28.08349 -27.29478 -26.11501 -22.89935 -22.77855 -20.28260 -19.78879 -19.65253 -19.54730 -17.85598 -17.25465 -16.96224 -16.49905 -16.39446 -15.55022 -15.50576 -15.21203 -15.09355 -14.84026 -14.81541 -14.73901 -14.71108 -14.48415 -13.71329 -13.44216 -13.16648 -12.80771 -12.64340 -12.46823 -12.07296 -11.79211 -11.67771 -11.37022 -11.07607 -9.53955 -8.93020 -8.79761 -6.54647 0.40808 0.92545 1.37941 1.50257 1.51310 1.52249 2.15730 2.46521 2.59364 2.62620 3.34356 3.46495 3.67449 4.28130 4.44488 4.47342 4.51226 4.74832 4.88515 4.93503 4.99572 5.15877 5.58106 5.74937 5.77577 6.01310 6.15330 6.40135 6.61581 6.72213 6.95474 8.11817 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.010060 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.057216 B = 2782.500156 C = 3855.505971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.337 6.337 3 C 0.162 3.838 4 C -0.321 4.321 5 C -0.057 4.057 6 C -0.204 4.204 7 C 0.116 3.884 8 C -0.448 4.448 9 H 0.076 0.924 10 C 0.042 3.958 11 N -0.791 5.791 12 Si 0.983 3.017 13 H -0.252 1.252 14 H -0.261 1.261 15 H -0.263 1.263 16 C -0.139 4.139 17 O -0.299 6.299 18 C 0.566 3.434 19 F -0.185 7.185 20 F -0.154 7.154 21 F -0.181 7.181 22 H 0.117 0.883 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.118 0.882 28 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.713 -2.307 -0.433 4.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.251 6.251 3 C 0.116 3.884 4 C -0.341 4.341 5 C -0.076 4.076 6 C -0.223 4.223 7 C 0.112 3.888 8 C -0.475 4.475 9 H 0.094 0.906 10 C -0.178 4.178 11 N -0.414 5.414 12 Si 0.802 3.198 13 H -0.177 1.177 14 H -0.185 1.185 15 H -0.187 1.187 16 C -0.184 4.184 17 O -0.219 6.219 18 C 0.477 3.523 19 F -0.167 7.167 20 F -0.135 7.135 21 F -0.163 7.163 22 H 0.135 0.865 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.156 0.844 26 H 0.148 0.852 27 H 0.136 0.864 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.550 -2.411 -0.378 4.308 hybrid contribution 0.549 0.114 0.415 0.698 sum -3.001 -2.296 0.037 3.779 Atomic orbital electron populations 1.23248 0.77062 1.04884 1.01959 1.86064 1.23193 1.27259 1.88552 1.19161 0.90384 0.85066 0.93807 1.20683 0.99278 0.91089 1.23064 1.20673 0.94370 0.96951 0.95556 1.20988 0.93283 0.98009 1.10021 1.17874 0.94393 0.89676 0.86866 1.19780 0.91752 1.02446 1.33506 0.90616 1.26824 1.05442 0.93896 0.91611 1.69844 1.40767 1.10886 1.19871 0.85177 0.75429 0.79545 0.79619 1.17650 1.18521 1.18671 1.17873 0.85839 0.84255 1.30406 1.86615 1.71106 1.41979 1.22243 1.21087 0.74700 0.75764 0.80793 1.93170 1.50639 1.93136 1.79736 1.93150 1.75990 1.49008 1.95381 1.93251 1.77412 1.65852 1.79761 0.86463 0.92374 0.91835 0.84370 0.85176 0.86370 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.81 113.37 1.11 1.75 15 2 O -0.34 -13.88 9.75 -79.79 -0.78 -14.66 15 3 C 0.16 7.47 6.45 22.53 0.15 7.62 15 4 C -0.32 -13.29 9.05 22.51 0.20 -13.09 15 5 C -0.06 -2.43 9.96 21.99 0.22 -2.21 15 6 C -0.20 -10.05 8.64 22.48 0.19 -9.86 15 7 C 0.12 6.15 5.46 -21.21 -0.12 6.03 15 8 C -0.45 -23.55 7.45 23.40 0.17 -23.37 15 9 H 0.08 4.04 7.66 -2.91 -0.02 4.02 15 10 C 0.04 2.00 5.13 85.24 0.44 2.44 15 11 N -0.79 -38.18 10.96 21.82 0.24 -37.94 15 12 Si 0.98 36.28 29.59 68.60 2.03 38.31 15 13 H -0.25 -8.83 7.11 99.48 0.71 -8.12 15 14 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 15 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 16 C -0.14 -7.18 5.37 23.15 0.12 -7.06 15 17 O -0.30 -15.22 9.39 -76.86 -0.72 -15.94 15 18 C 0.57 26.35 3.80 113.37 0.43 26.78 15 19 F -0.18 -8.33 16.45 44.97 0.74 -7.59 15 20 F -0.15 -6.39 17.53 44.97 0.79 -5.60 15 21 F -0.18 -8.91 15.81 44.97 0.71 -8.20 15 22 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15 23 H 0.06 1.51 7.66 -2.39 -0.02 1.50 15 24 H 0.06 1.59 7.66 -2.39 -0.02 1.57 15 25 H 0.14 4.65 6.27 -2.91 -0.02 4.63 15 26 H 0.13 4.58 8.06 -2.91 -0.02 4.56 15 27 H 0.12 5.90 6.15 -2.91 -0.02 5.88 15 28 H 0.30 12.76 8.30 -92.70 -0.77 11.99 15 Total: -1.00 -58.65 261.81 7.15 -51.50 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 1.21 Total: 11.08 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 2.93 Total: -10.96 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.24 Total: -37.94 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -1.50 Total: -30.60 kcal Atomic # 9 Polarization: -23.63 SS G_CDS: 2.24 Total: -21.39 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -58.65 7.15 -51.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380480374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.239 kcal (2) G-P(sol) polarization free energy of solvation -58.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds