Wall clock time and date at job start Mon Mar 30 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35972 * 116.99617 * 2 1 4 4 C 1.37816 * 120.02323 * 0.02562 * 3 2 1 5 5 C 1.40789 * 119.64970 * 179.97438 * 4 3 2 6 6 C 1.41207 * 120.16207 * 179.97438 * 5 4 3 7 7 H 1.07995 * 119.99769 * 330.13500 * 6 5 4 8 8 C 1.39869 * 119.99877 * 150.13866 * 6 5 4 9 9 N 1.30896 * 119.99801 * 161.72284 * 8 6 5 10 10 Si 1.86796 * 120.00314 * 341.71722 * 8 6 5 11 11 H 1.48497 * 109.47082 * 95.41872 * 10 8 6 12 12 H 1.48505 * 109.47065 * 215.41715 * 10 8 6 13 13 H 1.48502 * 109.47353 * 335.42082 * 10 8 6 14 14 C 1.40850 * 119.68204 * 359.97438 * 5 4 3 15 15 C 1.36463 * 120.02955 * 359.74305 * 14 5 4 16 16 C 1.39155 * 120.35827 * 0.51390 * 15 14 5 17 17 O 1.35734 * 119.83819 * 179.75798 * 16 15 14 18 18 C 1.42905 * 117.00395 * 359.72581 * 17 16 15 19 19 F 1.39902 * 109.47120 * 59.99449 * 18 17 16 20 20 F 1.39896 * 109.47516 * 179.97438 * 18 17 16 21 21 F 1.39901 * 109.46677 * 299.99835 * 18 17 16 22 22 H 1.08996 * 109.47297 * 60.00240 * 1 2 3 23 23 H 1.08996 * 109.46936 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47404 * 299.99909 * 1 2 3 25 25 H 1.08011 * 120.17278 * 359.96126 * 4 3 2 26 26 H 0.96997 * 120.00204 * 179.97438 * 9 8 6 27 27 H 1.08000 * 119.98727 * 180.02562 * 14 5 4 28 28 H 1.07999 * 119.81909 * 180.27408 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2960 2.3676 0.0005 5 6 1.9432 3.6179 0.0011 6 6 1.1852 4.8093 0.0011 7 1 0.2112 4.8295 -0.4650 8 6 1.6958 5.9631 0.6047 9 7 1.1901 7.1340 0.3107 10 14 3.0994 5.8330 1.8304 11 1 4.3892 6.0661 1.1325 12 1 2.9220 6.8520 2.8960 13 1 3.1028 4.4776 2.4371 14 6 3.3506 3.6748 0.0016 15 6 4.0806 2.5218 0.0069 16 6 3.4424 1.2853 0.0010 17 8 4.1790 0.1451 0.0014 18 6 5.6005 0.2910 0.0019 19 9 5.9967 0.9949 1.1442 20 9 6.1992 -0.9734 0.0028 21 9 5.9974 0.9945 -1.1404 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.2172 2.3147 0.0003 26 1 1.5439 7.9342 0.7295 27 1 3.8522 4.6312 0.0025 28 1 5.1595 2.5694 0.0118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395070636.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:18 Heat of formation + Delta-G solvation = -215.269186 kcal Electronic energy + Delta-G solvation = -20038.709563 eV Core-core repulsion = 16219.197050 eV Total energy + Delta-G solvation = -3819.512513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.96084 -47.72703 -47.52536 -39.58983 -37.78345 -36.42970 -33.50226 -30.22987 -29.43242 -27.09192 -25.88960 -24.30323 -21.69011 -21.30017 -19.07708 -18.64555 -18.42196 -18.10674 -16.40573 -15.74522 -15.26928 -15.16985 -15.09883 -14.53291 -14.47285 -14.11399 -14.03324 -13.78514 -13.48906 -13.43459 -13.24574 -12.95154 -12.79413 -12.13732 -11.82836 -11.38011 -11.16173 -10.99540 -10.70499 -10.30475 -9.98695 -9.84031 -9.28759 -7.90253 -7.24250 -7.15344 -4.68730 2.20317 2.23892 2.43566 3.00037 3.10330 3.21364 3.45977 3.83982 3.88299 4.18305 4.36476 4.52602 5.14680 5.49809 5.61015 5.65032 5.76419 5.87547 6.27077 6.33309 6.39404 6.70298 6.95278 7.16673 7.42792 7.48855 7.65058 8.05400 8.15688 8.41653 8.58231 9.85537 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.008184 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.201649 B = 3420.312867 C = 4444.145091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.321 6.321 3 C 0.168 3.832 4 C -0.276 4.276 5 C 0.110 3.890 6 C -0.434 4.434 7 H 0.095 0.905 8 C 0.085 3.915 9 N -0.795 5.795 10 Si 0.909 3.091 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.241 1.241 14 C -0.229 4.229 15 C -0.102 4.102 16 C -0.074 4.074 17 O -0.302 6.302 18 C 0.598 3.402 19 F -0.175 7.175 20 F -0.147 7.147 21 F -0.174 7.174 22 H 0.052 0.948 23 H 0.089 0.911 24 H 0.053 0.947 25 H 0.122 0.878 26 H 0.289 0.711 27 H 0.111 0.889 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.946 -8.266 0.861 9.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.235 6.235 3 C 0.123 3.877 4 C -0.296 4.296 5 C 0.106 3.894 6 C -0.462 4.462 7 H 0.113 0.887 8 C -0.136 4.136 9 N -0.418 5.418 10 Si 0.734 3.266 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.164 1.164 14 C -0.248 4.248 15 C -0.120 4.120 16 C -0.116 4.116 17 O -0.223 6.223 18 C 0.507 3.493 19 F -0.157 7.157 20 F -0.129 7.129 21 F -0.156 7.156 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.071 0.929 25 H 0.140 0.860 26 H 0.100 0.900 27 H 0.129 0.871 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.913 -8.329 0.864 9.243 hybrid contribution 0.725 0.442 0.465 0.968 sum 4.638 -7.887 1.329 9.246 Atomic orbital electron populations 1.22909 0.79387 1.02554 1.01451 1.86032 1.20529 1.27578 1.89384 1.17876 0.87614 0.84371 0.97866 1.20875 0.98426 0.90628 1.19654 1.17516 0.91168 0.92659 0.88050 1.19467 1.04534 0.91617 1.30570 0.88706 1.26216 0.96925 0.94172 0.96310 1.69708 1.38153 0.99245 1.34696 0.86340 0.80180 0.80166 0.79866 1.19252 1.21393 1.16447 1.20596 0.94260 0.96348 1.13633 1.20536 0.98572 0.91443 1.01479 1.17333 0.86880 0.82646 1.24737 1.86272 1.11964 1.33045 1.91007 1.19466 0.81711 0.73604 0.74557 1.93251 1.91377 1.79139 1.51963 1.93220 1.82484 1.40735 1.96419 1.93254 1.91349 1.79136 1.51905 0.92922 0.89300 0.92873 0.86033 0.90035 0.87146 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 15 2 O -0.32 -6.37 10.28 -34.19 -0.35 -6.72 15 3 C 0.17 3.70 6.70 -39.15 -0.26 3.44 15 4 C -0.28 -6.17 8.78 -38.77 -0.34 -6.51 15 5 C 0.11 2.66 5.10 -106.82 -0.55 2.12 15 6 C -0.43 -11.06 9.55 -37.84 -0.36 -11.42 15 7 H 0.09 2.50 8.06 -52.49 -0.42 2.07 15 8 C 0.08 2.10 5.40 -17.34 -0.09 2.01 15 9 N -0.80 -20.01 13.93 55.54 0.77 -19.24 15 10 Si 0.91 19.84 24.51 -169.99 -4.17 15.67 15 11 H -0.27 -5.65 6.70 56.52 0.38 -5.27 15 12 H -0.29 -6.01 7.11 56.52 0.40 -5.61 15 13 H -0.24 -5.45 6.87 56.52 0.39 -5.06 15 14 C -0.23 -5.39 7.11 -39.23 -0.28 -5.67 15 15 C -0.10 -2.25 8.17 -39.88 -0.33 -2.57 15 16 C -0.07 -1.66 6.53 -38.65 -0.25 -1.91 15 17 O -0.30 -6.23 10.14 -33.45 -0.34 -6.57 15 18 C 0.60 10.53 3.42 101.05 0.35 10.88 15 19 F -0.18 -3.07 15.53 2.25 0.03 -3.03 15 20 F -0.15 -2.31 17.53 2.25 0.04 -2.27 15 21 F -0.17 -3.03 15.56 2.25 0.04 -2.99 15 22 H 0.05 0.74 7.66 -51.93 -0.40 0.34 15 23 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.05 0.75 7.66 -51.93 -0.40 0.35 15 25 H 0.12 2.47 6.29 -52.48 -0.33 2.14 15 26 H 0.29 6.56 8.30 -40.82 -0.34 6.22 15 27 H 0.11 2.55 4.72 -52.49 -0.25 2.30 15 28 H 0.11 2.28 5.05 -52.49 -0.27 2.01 15 LS Contribution 254.61 15.07 3.84 3.84 Total: -1.00 -26.47 254.61 -2.91 -29.38 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -1.65 Total: 0.10 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.12 Total: -8.18 kcal Atomic # 7 Polarization: -20.01 SS G_CDS: 0.77 Total: -19.24 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.69 Total: -13.28 kcal Atomic # 9 Polarization: -8.40 SS G_CDS: 0.11 Total: -8.29 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.17 Total: 15.67 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -26.47 -2.91 -29.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395070636.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.885 kcal (2) G-P(sol) polarization free energy of solvation -26.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds