Wall clock time and date at job start Mon Mar 30 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38258 * 119.92241 * 269.71976 * 10 9 7 12 12 C 1.38244 * 120.14309 * 179.72664 * 11 10 9 13 13 C 1.38566 * 119.99897 * 0.55108 * 12 11 10 14 14 O 1.35994 * 120.07374 * 179.70229 * 13 12 11 15 15 C 1.42901 * 116.99958 * 0.02617 * 14 13 12 16 16 F 1.39904 * 109.46939 * 59.99889 * 15 14 13 17 17 F 1.39895 * 109.46753 * 179.97438 * 15 14 13 18 18 F 1.39897 * 109.46997 * 300.00054 * 15 14 13 19 19 C 1.39155 * 119.85404 * 359.72783 * 13 12 11 20 20 O 1.35995 * 120.07371 * 180.02562 * 19 13 12 21 21 C 1.38236 * 119.92780 * 90.00165 * 10 9 7 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.07999 * 119.92668 * 359.97438 * 11 10 9 26 26 H 1.07994 * 120.00077 * 180.25678 * 12 11 10 27 27 H 0.96696 * 113.99913 * 269.97690 * 20 19 13 28 28 H 1.08000 * 120.00024 * 359.97397 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2442 -3.2608 1.2112 12 6 4.6995 -4.5661 1.2211 13 6 4.9370 -5.2261 0.0260 14 8 5.3907 -6.5081 0.0340 15 6 5.6005 -7.1141 1.3110 16 9 4.3945 -7.1377 2.0198 17 9 6.0636 -8.4225 1.1358 18 9 6.5481 -6.3755 2.0276 19 6 4.7106 -4.5740 -1.1822 20 8 4.9416 -5.2177 -2.3577 21 6 4.2487 -3.2676 -1.1851 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 4.0642 -2.7459 2.1433 26 1 4.8748 -5.0698 2.1602 27 1 5.8413 -5.1094 -2.6952 28 1 4.0719 -2.7593 -2.1215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396043200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:44 Heat of formation + Delta-G solvation = -218.011082 kcal Electronic energy + Delta-G solvation = -19472.408235 eV Core-core repulsion = 15652.776824 eV Total energy + Delta-G solvation = -3819.631411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.45891 -48.20183 -48.03646 -40.28489 -37.94022 -36.68106 -33.21928 -31.24786 -29.75111 -27.74916 -25.74175 -23.12801 -22.69736 -20.94350 -19.64525 -19.16328 -19.00457 -17.62905 -16.86811 -16.47810 -15.71605 -15.33570 -15.05091 -14.83843 -14.55039 -14.49568 -14.35668 -14.23861 -13.94035 -13.80575 -13.46824 -13.10103 -12.62304 -12.24543 -11.94718 -11.42013 -11.21950 -10.80948 -10.57013 -10.10633 -10.06393 -9.46993 -8.66961 -8.59287 -7.89214 -6.15110 -4.15969 1.44267 1.51077 1.54583 2.84573 3.22732 3.31253 3.32042 3.78465 3.80971 4.02467 4.25907 4.33716 4.92969 5.04088 5.18095 5.52793 5.60866 5.73767 5.99138 6.31630 6.54015 6.60951 6.68642 6.85212 7.10094 7.30493 7.57331 7.78775 8.39224 8.89605 9.43726 10.97592 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.035148 B = 0.004911 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.450344 B = 5700.092007 C = 5966.518630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.026 4.026 11 C -0.089 4.089 12 C -0.174 4.174 13 C 0.046 3.954 14 O -0.304 6.304 15 C 0.600 3.400 16 F -0.166 7.166 17 F -0.138 7.138 18 F -0.169 7.169 19 C 0.102 3.898 20 O -0.487 6.487 21 C -0.111 4.111 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.033 0.967 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.384 0.616 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.835 -10.824 1.524 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.093 0.907 9 C -0.022 4.022 10 C -0.026 4.026 11 C -0.107 4.107 12 C -0.192 4.192 13 C 0.004 3.996 14 O -0.225 6.225 15 C 0.510 3.490 16 F -0.148 7.148 17 F -0.119 7.119 18 F -0.151 7.151 19 C 0.057 3.943 20 O -0.296 6.296 21 C -0.130 4.130 22 H 0.075 0.925 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.152 0.848 26 H 0.148 0.852 27 H 0.239 0.761 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.124 -11.015 1.459 17.195 hybrid contribution 0.768 0.766 0.295 1.124 sum 13.892 -10.248 1.754 17.352 Atomic orbital electron populations 1.69894 1.06292 1.27133 1.50083 1.24999 0.94750 0.99053 0.94325 0.86803 0.80367 0.83615 0.78706 1.20080 1.21169 1.18883 1.20902 0.87991 0.94851 1.51972 0.90677 1.18840 0.97683 0.87800 0.97865 1.20299 0.92388 0.98595 0.91331 1.20957 0.97745 0.92968 0.99067 1.21342 1.05112 0.97255 0.95518 1.19018 1.03893 0.81399 0.95332 1.86433 1.82061 1.28365 1.25612 1.19436 0.74945 0.76526 0.78138 1.93306 1.46119 1.96187 1.79168 1.93275 1.88647 1.34784 1.95206 1.93282 1.65747 1.77168 1.78898 1.17638 1.03660 0.90742 0.82282 1.84904 1.35421 1.73588 1.35646 1.21250 1.00021 0.91810 0.99882 0.92451 0.95415 0.94915 0.84792 0.85211 0.76082 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.96 55.43 0.77 -26.03 15 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 15 3 Si 0.88 20.49 27.47 -169.99 -4.67 15.82 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 15 7 C -0.52 -14.14 9.65 -34.44 -0.33 -14.48 15 8 H 0.08 2.26 7.98 -52.49 -0.42 1.84 15 9 C 0.02 0.34 4.17 -29.03 -0.12 0.22 15 10 C -0.03 -0.50 5.07 -104.62 -0.53 -1.03 15 11 C -0.09 -1.57 9.69 -39.57 -0.38 -1.95 15 12 C -0.17 -2.79 8.26 -39.46 -0.33 -3.11 15 13 C 0.05 0.74 6.50 -39.12 -0.25 0.49 15 14 O -0.30 -4.56 10.16 -34.22 -0.35 -4.91 15 15 C 0.60 7.75 3.42 101.05 0.35 8.10 15 16 F -0.17 -2.23 15.57 2.25 0.04 -2.20 15 17 F -0.14 -1.62 17.53 2.25 0.04 -1.58 15 18 F -0.17 -2.08 15.56 2.25 0.04 -2.04 15 19 C 0.10 1.69 6.72 -39.12 -0.26 1.43 15 20 O -0.49 -7.10 13.29 -34.23 -0.45 -7.55 15 21 C -0.11 -1.98 9.63 -39.46 -0.38 -2.36 15 22 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.03 0.59 7.52 -51.93 -0.39 0.20 15 24 H 0.03 0.71 7.13 -51.93 -0.37 0.34 15 25 H 0.13 2.19 8.06 -52.49 -0.42 1.77 15 26 H 0.13 1.84 5.10 -52.49 -0.27 1.57 15 27 H 0.38 3.54 9.06 45.56 0.41 3.95 15 28 H 0.14 2.39 8.06 -52.49 -0.42 1.97 15 LS Contribution 264.09 15.07 3.98 3.98 Total: -1.00 -30.25 264.09 -4.00 -34.25 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -1.05 Total: 1.09 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.34 Total: -10.82 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.77 Total: -26.03 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.80 Total: -12.47 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.25 -4.00 -34.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396043200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.760 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds