Wall clock time and date at job start Mon Mar 30 2020 06:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38258 * 119.92241 * 269.71976 * 10 9 7 12 12 C 1.38244 * 120.14309 * 179.72664 * 11 10 9 13 13 C 1.38566 * 119.99897 * 0.55108 * 12 11 10 14 14 O 1.35994 * 120.07374 * 179.70229 * 13 12 11 15 15 C 1.42901 * 116.99958 * 0.02617 * 14 13 12 16 16 F 1.39904 * 109.46939 * 59.99889 * 15 14 13 17 17 F 1.39895 * 109.46753 * 179.97438 * 15 14 13 18 18 F 1.39897 * 109.46997 * 300.00054 * 15 14 13 19 19 C 1.39155 * 119.85404 * 359.72783 * 13 12 11 20 20 O 1.35995 * 120.07371 * 180.02562 * 19 13 12 21 21 C 1.38236 * 119.92780 * 90.00165 * 10 9 7 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.07999 * 119.92668 * 359.97438 * 11 10 9 26 26 H 1.07994 * 120.00077 * 180.25678 * 12 11 10 27 27 H 0.96696 * 113.99913 * 269.97690 * 20 19 13 28 28 H 1.08000 * 120.00024 * 359.97397 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2442 -3.2608 1.2112 12 6 4.6995 -4.5661 1.2211 13 6 4.9370 -5.2261 0.0260 14 8 5.3907 -6.5081 0.0340 15 6 5.6005 -7.1141 1.3110 16 9 4.3945 -7.1377 2.0198 17 9 6.0636 -8.4225 1.1358 18 9 6.5481 -6.3755 2.0276 19 6 4.7106 -4.5740 -1.1822 20 8 4.9416 -5.2177 -2.3577 21 6 4.2487 -3.2676 -1.1851 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 4.0642 -2.7459 2.1433 26 1 4.8748 -5.0698 2.1602 27 1 5.8413 -5.1094 -2.6952 28 1 4.0719 -2.7593 -2.1215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396043200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:43 Heat of formation + Delta-G solvation = -238.323363 kcal Electronic energy + Delta-G solvation = -19473.289042 eV Core-core repulsion = 15652.776824 eV Total energy + Delta-G solvation = -3820.512218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.48619 -49.20235 -49.07541 -41.54611 -39.18343 -37.95771 -35.14199 -32.94393 -31.08753 -29.33679 -26.97987 -24.79487 -23.97870 -22.42341 -20.80827 -20.20728 -20.12058 -18.97885 -18.83364 -17.70343 -16.99443 -16.62109 -16.27522 -16.07529 -15.85303 -15.63791 -15.50586 -15.30471 -15.23217 -15.05282 -14.78116 -14.43205 -14.28708 -13.92499 -13.54798 -12.95185 -12.66262 -12.32260 -12.23698 -11.81230 -11.62960 -11.46519 -10.77216 -9.91406 -9.28882 -8.27970 -6.34303 0.14064 0.16221 0.42980 1.40844 1.42450 1.53810 1.75657 2.37683 2.51153 2.73701 2.94420 3.03725 3.08274 3.67696 3.80259 4.09581 4.31859 4.39129 4.67648 4.96865 5.07132 5.11481 5.15910 5.32103 5.56684 5.76969 5.80073 6.26043 6.72664 6.77778 7.29507 8.88553 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.035148 B = 0.004911 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.450344 B = 5700.092007 C = 5966.518630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.239 1.239 7 C -0.524 4.524 8 H 0.027 0.973 9 C 0.020 3.980 10 C -0.053 4.053 11 C -0.096 4.096 12 C -0.169 4.169 13 C 0.047 3.953 14 O -0.309 6.309 15 C 0.605 3.395 16 F -0.168 7.168 17 F -0.128 7.128 18 F -0.162 7.162 19 C 0.107 3.893 20 O -0.493 6.493 21 C -0.118 4.118 22 H 0.267 0.733 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.142 0.858 26 H 0.149 0.851 27 H 0.409 0.591 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.009 -10.879 1.645 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.162 1.162 7 C -0.562 4.562 8 H 0.046 0.954 9 C -0.017 4.017 10 C -0.053 4.053 11 C -0.114 4.114 12 C -0.187 4.187 13 C 0.005 3.995 14 O -0.229 6.229 15 C 0.515 3.485 16 F -0.150 7.150 17 F -0.110 7.110 18 F -0.144 7.144 19 C 0.061 3.939 20 O -0.305 6.305 21 C -0.136 4.136 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.160 0.840 26 H 0.167 0.833 27 H 0.268 0.732 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 15.342 -11.096 1.574 19.000 hybrid contribution 0.100 0.584 0.226 0.635 sum 15.442 -10.512 1.800 18.767 Atomic orbital electron populations 1.70066 1.08505 1.28322 1.52152 1.26012 0.95569 1.03534 0.93889 0.85636 0.79687 0.77851 0.79368 1.19042 1.21299 1.16162 1.21168 0.90871 0.93025 1.51100 0.95444 1.18697 0.94123 0.90236 0.98615 1.20152 0.94619 0.97746 0.92773 1.21067 0.97796 0.93682 0.98823 1.21492 1.04263 0.96634 0.96360 1.19097 1.03194 0.81876 0.95338 1.86414 1.81855 1.27675 1.26966 1.19322 0.74929 0.76734 0.77535 1.93306 1.46403 1.96207 1.79103 1.93302 1.88490 1.34072 1.95106 1.93298 1.65436 1.77084 1.78616 1.17569 1.02967 0.90241 0.83121 1.84840 1.37701 1.73139 1.34855 1.21296 1.00218 0.92558 0.99554 0.92380 0.94268 0.93957 0.83987 0.83342 0.73166 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.52 13.96 21.45 0.30 -58.22 15 2 C 0.01 0.40 5.47 84.66 0.46 0.86 15 3 Si 0.95 41.82 27.47 68.60 1.88 43.70 15 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.24 -9.41 6.54 99.48 0.65 -8.76 15 7 C -0.52 -29.11 9.65 25.60 0.25 -28.86 15 8 H 0.03 1.73 7.98 -2.91 -0.02 1.70 15 9 C 0.02 0.89 4.17 29.10 0.12 1.01 15 10 C -0.05 -2.01 5.07 -19.86 -0.10 -2.11 15 11 C -0.10 -3.26 9.69 22.28 0.22 -3.05 15 12 C -0.17 -5.13 8.26 22.35 0.18 -4.94 15 13 C 0.05 1.46 6.50 22.57 0.15 1.60 15 14 O -0.31 -8.55 10.16 -79.62 -0.81 -9.35 15 15 C 0.61 14.21 3.42 113.37 0.39 14.60 15 16 F -0.17 -4.18 15.57 44.97 0.70 -3.48 15 17 F -0.13 -2.72 17.53 44.97 0.79 -1.93 15 18 F -0.16 -3.58 15.56 44.97 0.70 -2.88 15 19 C 0.11 3.36 6.72 22.57 0.15 3.51 15 20 O -0.49 -13.32 13.29 -79.63 -1.06 -14.38 15 21 C -0.12 -4.10 9.63 22.35 0.22 -3.89 15 22 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 23 H 0.04 1.61 7.52 -2.38 -0.02 1.60 15 24 H 0.04 1.76 7.13 -2.39 -0.02 1.74 15 25 H 0.14 4.49 8.06 -2.91 -0.02 4.47 15 26 H 0.15 3.87 5.10 -2.91 -0.01 3.85 15 27 H 0.41 6.45 9.06 -74.06 -0.67 5.78 15 28 H 0.15 4.80 8.06 -2.91 -0.02 4.78 15 Total: -1.00 -65.49 264.09 5.04 -60.45 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.50 Total: 7.36 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 2.03 Total: -21.27 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.30 Total: -58.22 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -1.87 Total: -23.73 kcal Atomic # 9 Polarization: -10.48 SS G_CDS: 2.19 Total: -8.29 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.70 kcal Total: -65.49 5.04 -60.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396043200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.878 kcal (2) G-P(sol) polarization free energy of solvation -65.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds