Wall clock time and date at job start Mon Mar 30 2020 06:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38156 * 119.99872 * 264.72198 * 10 9 7 12 12 C 1.38674 * 119.99832 * 179.77016 * 11 10 9 13 13 O 1.35979 * 120.00239 * 180.25189 * 12 11 10 14 14 C 1.38720 * 120.00038 * 0.52948 * 12 11 10 15 15 C 1.38112 * 119.99834 * 359.72640 * 14 12 11 16 16 C 1.38668 * 119.99964 * 84.99833 * 10 9 7 17 17 O 1.35986 * 120.00482 * 359.97438 * 16 10 9 18 18 C 1.42896 * 117.00517 * 180.02562 * 17 16 10 19 19 F 1.39901 * 109.47016 * 59.99607 * 18 17 16 20 20 F 1.39899 * 109.47254 * 180.02562 * 18 17 16 21 21 F 1.39901 * 109.46813 * 299.99912 * 18 17 16 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.07997 * 120.00099 * 0.02562 * 11 10 9 26 26 H 0.96699 * 114.00625 * 270.27959 * 13 12 11 27 27 H 1.08000 * 120.00036 * 179.70121 * 14 12 11 28 28 H 1.08003 * 119.99728 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0137 -2.6151 -0.0001 11 6 4.3472 -3.2299 1.1913 12 6 4.8049 -4.5390 1.1916 13 8 5.1283 -5.1459 2.3647 14 6 4.9382 -5.2274 -0.0053 15 6 4.6098 -4.6110 -1.1967 16 6 4.1465 -3.3034 -1.1965 17 8 3.8231 -2.6965 -2.3697 18 6 3.9839 -3.4650 -3.5636 19 9 3.1775 -4.6062 -3.4958 20 9 3.6092 -2.6935 -4.6689 21 9 5.3232 -3.8476 -3.6950 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 4.2476 -2.6925 2.1228 26 1 6.0514 -5.0276 2.6275 27 1 5.2992 -6.2453 -0.0054 28 1 4.7140 -5.1468 -2.1286 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396043551.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:34 Heat of formation + Delta-G solvation = -238.343074 kcal Electronic energy + Delta-G solvation = -19928.136057 eV Core-core repulsion = 16107.622985 eV Total energy + Delta-G solvation = -3820.513072 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.46175 -49.17303 -49.04298 -41.44487 -39.52528 -37.23964 -35.31246 -33.40488 -30.56818 -29.42007 -26.88660 -25.12833 -23.71846 -22.45787 -20.73081 -20.18308 -19.95001 -19.01090 -18.92986 -17.69845 -16.84703 -16.53685 -16.17851 -16.15452 -15.80619 -15.57701 -15.48701 -15.40632 -15.17400 -15.03632 -14.73739 -14.38402 -14.06586 -14.02260 -13.51154 -13.00710 -12.71211 -12.51237 -12.27075 -11.88887 -11.65453 -11.29698 -10.79003 -9.88840 -9.24328 -8.29850 -6.34944 0.11550 0.25738 0.56079 1.36779 1.38045 1.49254 1.79271 2.35130 2.49384 2.77392 2.99999 3.04421 3.25586 3.66248 3.72126 4.15561 4.24472 4.46625 4.73588 4.91754 5.02276 5.07806 5.25486 5.37038 5.54331 5.63480 5.86261 6.23258 6.69294 6.90835 7.27713 8.86894 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.009220 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.054932 B = 3036.159297 C = 4424.476844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.240 1.240 7 C -0.516 4.516 8 H 0.025 0.975 9 C 0.025 3.975 10 C -0.054 4.054 11 C -0.123 4.123 12 C 0.098 3.902 13 O -0.500 6.500 14 C -0.116 4.116 15 C -0.172 4.172 16 C 0.073 3.927 17 O -0.316 6.316 18 C 0.605 3.395 19 F -0.167 7.167 20 F -0.134 7.134 21 F -0.159 7.159 22 H 0.268 0.732 23 H 0.029 0.971 24 H 0.043 0.957 25 H 0.143 0.857 26 H 0.412 0.588 27 H 0.168 0.832 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.959 -8.996 -3.008 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.163 1.163 7 C -0.554 4.554 8 H 0.044 0.956 9 C -0.012 4.012 10 C -0.054 4.054 11 C -0.141 4.141 12 C 0.053 3.947 13 O -0.313 6.313 14 C -0.134 4.134 15 C -0.190 4.190 16 C 0.031 3.969 17 O -0.236 6.236 18 C 0.514 3.486 19 F -0.149 7.149 20 F -0.115 7.115 21 F -0.141 7.141 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.161 0.839 26 H 0.271 0.729 27 H 0.185 0.815 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 14.177 -8.903 -3.064 17.019 hybrid contribution 0.040 0.790 -0.422 0.896 sum 14.217 -8.114 -3.486 16.736 Atomic orbital electron populations 1.70055 1.08315 1.28254 1.52260 1.25947 0.95597 1.03319 0.93930 0.85704 0.79807 0.78215 0.79278 1.19395 1.20662 1.16304 1.21052 0.90534 0.92965 1.50868 0.95625 1.18564 0.94540 0.90071 0.98017 1.19442 0.97905 0.98059 0.90033 1.21329 1.00544 0.94982 0.97251 1.18364 1.00173 0.90078 0.86081 1.84810 1.35331 1.74883 1.36268 1.21355 1.00687 1.01583 0.89777 1.21498 1.03818 0.92406 1.01307 1.18739 1.01934 0.93252 0.82978 1.86562 1.82949 1.41026 1.13091 1.19310 0.74784 0.74893 0.79589 1.93278 1.74033 1.51512 1.96042 1.93284 1.91505 1.76078 1.50676 1.93279 1.34163 1.90911 1.95760 0.92354 0.95266 0.93867 0.83946 0.72905 0.81478 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.09 13.96 21.45 0.30 -59.79 15 2 C 0.01 0.54 5.47 84.66 0.46 1.00 15 3 Si 0.95 44.02 27.47 68.60 1.88 45.90 15 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.24 -10.09 6.54 99.48 0.65 -9.44 15 7 C -0.52 -30.22 9.65 25.60 0.25 -29.98 15 8 H 0.03 1.69 7.98 -2.91 -0.02 1.66 15 9 C 0.03 1.20 3.89 29.10 0.11 1.31 15 10 C -0.05 -2.21 5.08 -19.78 -0.10 -2.31 15 11 C -0.12 -4.26 9.61 22.35 0.21 -4.05 15 12 C 0.10 2.78 6.70 22.49 0.15 2.93 15 13 O -0.50 -11.42 13.50 -93.32 -1.26 -12.68 15 14 C -0.12 -3.01 9.98 22.35 0.22 -2.79 15 15 C -0.17 -5.17 8.25 22.36 0.18 -4.98 15 16 C 0.07 2.77 6.46 22.49 0.15 2.92 15 17 O -0.32 -12.52 9.51 -93.40 -0.89 -13.41 15 18 C 0.61 18.97 3.42 113.37 0.39 19.36 15 19 F -0.17 -5.09 15.56 44.97 0.70 -4.39 15 20 F -0.13 -4.14 17.53 44.97 0.79 -3.36 15 21 F -0.16 -4.22 15.56 44.97 0.70 -3.52 15 22 H 0.27 15.75 8.31 -92.71 -0.77 14.98 15 23 H 0.03 1.38 7.11 -2.39 -0.02 1.37 15 24 H 0.04 1.93 7.11 -2.39 -0.02 1.91 15 25 H 0.14 4.70 8.06 -2.91 -0.02 4.68 15 26 H 0.41 4.63 9.06 -74.06 -0.67 3.96 15 27 H 0.17 3.10 8.06 -2.91 -0.02 3.07 15 28 H 0.15 3.84 5.09 -2.91 -0.01 3.82 15 Total: -1.00 -70.06 263.15 4.76 -65.30 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 0.50 Total: 2.52 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 2.03 Total: -16.58 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.30 Total: -59.79 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -2.15 Total: -26.09 kcal Atomic # 9 Polarization: -13.45 SS G_CDS: 2.19 Total: -11.27 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -70.06 4.76 -65.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396043551.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.042 kcal (2) G-P(sol) polarization free energy of solvation -70.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds