Wall clock time and date at job start Mon Mar 30 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47210 * 299.99931 * 3 2 1 6 6 H 1.48504 * 109.46818 * 59.99934 * 3 2 1 7 7 C 1.37875 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.38255 * 119.99975 * 89.99742 * 10 9 7 12 12 C 1.38219 * 120.00054 * 180.02562 * 11 10 9 13 13 C 1.38249 * 120.00097 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00408 * 179.97438 * 13 12 11 15 15 F 1.39904 * 109.46806 * 13.53852 * 14 13 12 16 16 F 1.39892 * 109.47183 * 133.53620 * 14 13 12 17 17 C 1.38216 * 119.99857 * 0.02562 * 13 12 11 18 18 C 1.50707 * 119.99850 * 179.97438 * 17 13 12 19 19 F 1.39902 * 109.46830 * 230.44874 * 18 17 13 20 20 F 1.39903 * 109.46973 * 110.45276 * 18 17 13 21 21 C 1.38218 * 120.00040 * 270.27974 * 10 9 7 22 22 H 0.97008 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47349 * 60.00568 * 9 7 2 24 24 H 1.08996 * 109.47359 * 299.99777 * 9 7 2 25 25 H 1.08006 * 120.00060 * 0.02562 * 11 10 9 26 26 H 1.08005 * 119.99681 * 179.97438 * 12 11 10 27 27 H 1.08996 * 109.47244 * 253.54060 * 14 13 12 28 28 H 1.08992 * 109.47112 * 350.45099 * 18 17 13 29 29 H 1.07992 * 120.00141 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2301 -3.6446 0.0005 11 6 2.6793 -4.1701 1.1979 12 6 3.5778 -5.2203 1.1979 13 6 4.0278 -5.7451 0.0006 14 6 5.0079 -6.8899 0.0006 15 9 5.0762 -7.4453 1.2828 16 9 4.5851 -7.8657 -0.9083 17 6 3.5795 -5.2192 -1.1964 18 6 4.0705 -5.7909 -2.5015 19 9 4.5227 -4.7536 -3.3242 20 9 3.0240 -6.4677 -3.1371 21 6 2.6836 -4.1662 -1.1965 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.3281 -3.7598 2.1332 26 1 3.9290 -5.6305 2.1333 27 1 5.9929 -6.5249 -0.2902 28 1 4.8884 -6.4851 -2.3092 29 1 2.3359 -3.7531 -2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396105821.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:51 Heat of formation + Delta-G solvation = -191.005534 kcal Electronic energy + Delta-G solvation = -19423.014141 eV Core-core repulsion = 15616.926568 eV Total energy + Delta-G solvation = -3806.087573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.27241 -48.77195 -47.19496 -46.81108 -39.15170 -34.05092 -32.21092 -31.40941 -28.46375 -26.35882 -25.17988 -22.92371 -21.84775 -20.37673 -18.02663 -17.61865 -17.44975 -17.02656 -16.67280 -16.46536 -16.22429 -14.76524 -14.68367 -14.14101 -14.07176 -13.79677 -13.74982 -13.48015 -13.19512 -13.02491 -12.71275 -12.57478 -12.23770 -11.75488 -11.48167 -11.39944 -11.11106 -10.88468 -10.60323 -10.43970 -9.75846 -9.62255 -8.77719 -8.54045 -8.25376 -6.16163 -4.21276 1.29194 1.57895 3.23249 3.31302 3.35531 3.59042 3.79930 3.88445 4.05347 4.28389 4.36430 4.44826 4.66327 4.77345 5.16281 5.18808 5.23803 5.59595 5.73033 5.82187 6.04943 6.19406 6.47353 6.71093 6.83186 7.18672 7.38693 7.57057 7.78665 8.14101 8.83539 9.43740 10.93828 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.005639 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.184357 B = 4964.377222 C = 5498.962280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.044 3.956 10 C -0.013 4.013 11 C -0.105 4.105 12 C -0.089 4.089 13 C -0.174 4.174 14 C 0.311 3.689 15 F -0.196 7.196 16 F -0.201 7.201 17 C -0.141 4.141 18 C 0.306 3.694 19 F -0.199 7.199 20 F -0.196 7.196 21 C -0.084 4.084 22 H 0.263 0.737 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.115 0.885 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.541 -12.331 -0.477 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.007 3.993 10 C -0.013 4.013 11 C -0.123 4.123 12 C -0.107 4.107 13 C -0.175 4.175 14 C 0.257 3.743 15 F -0.178 7.178 16 F -0.182 7.182 17 C -0.142 4.142 18 C 0.252 3.748 19 F -0.180 7.180 20 F -0.177 7.177 21 C -0.102 4.102 22 H 0.073 0.927 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.150 0.850 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.368 -12.250 -0.511 15.430 hybrid contribution 0.308 0.900 -0.079 0.955 sum 9.676 -11.350 -0.589 14.926 Atomic orbital electron populations 1.69960 1.06073 1.26991 1.49894 1.25006 0.94911 0.99386 0.94861 0.86439 0.80105 0.83217 0.77738 1.19601 1.20810 1.20845 1.21024 0.93085 0.89551 1.51864 0.92269 1.18467 0.92481 0.89295 0.99062 1.20930 0.94762 0.94187 0.91426 1.21282 0.96706 0.95296 0.99040 1.20875 0.96917 0.96448 0.96465 1.19816 1.03204 0.99907 0.94529 1.20369 0.98669 0.82264 0.72949 1.92970 1.97507 1.86953 1.40332 1.92981 1.92334 1.66056 1.66816 1.19942 1.01806 0.99957 0.92506 1.20596 0.87357 0.83432 0.83404 1.93016 1.89223 1.61096 1.74678 1.93009 1.60797 1.80283 1.83628 1.20952 0.95457 0.94163 0.99644 0.92690 0.94781 0.94680 0.84973 0.85085 0.86150 0.86750 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.76 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.52 -13.86 9.09 -34.44 -0.31 -14.17 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 15 9 C 0.04 1.06 5.10 -29.03 -0.15 0.92 15 10 C -0.01 -0.26 5.07 -104.62 -0.53 -0.79 15 11 C -0.11 -1.85 9.70 -39.58 -0.38 -2.23 15 12 C -0.09 -1.34 9.42 -39.58 -0.37 -1.71 15 13 C -0.17 -2.53 5.70 -104.63 -0.60 -3.13 15 14 C 0.31 3.56 4.79 36.01 0.17 3.73 15 15 F -0.20 -2.39 16.10 2.25 0.04 -2.36 15 16 F -0.20 -2.50 14.84 2.25 0.03 -2.46 15 17 C -0.14 -2.29 5.36 -104.62 -0.56 -2.85 15 18 C 0.31 4.40 4.70 36.01 0.17 4.57 15 19 F -0.20 -3.12 17.11 2.25 0.04 -3.08 15 20 F -0.20 -3.11 17.32 2.25 0.04 -3.07 15 21 C -0.08 -1.59 9.18 -39.58 -0.36 -1.96 15 22 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 23 H 0.03 0.88 8.09 -51.93 -0.42 0.46 15 24 H 0.03 0.89 8.09 -51.93 -0.42 0.47 15 25 H 0.13 2.18 8.06 -52.48 -0.42 1.76 15 26 H 0.13 1.65 7.26 -52.48 -0.38 1.27 15 27 H 0.12 0.94 8.14 -51.93 -0.42 0.52 15 28 H 0.12 1.28 5.36 -51.93 -0.28 1.00 15 29 H 0.13 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 272.19 15.07 4.10 4.10 Total: -1.00 -28.97 272.19 -5.37 -34.34 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -2.31 Total: -2.55 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -3.02 Total: -16.06 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.74 Total: -24.76 kcal Atomic # 9 Polarization: -11.12 SS G_CDS: 0.15 Total: -10.97 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.97 -5.37 -34.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396105821.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.662 kcal (2) G-P(sol) polarization free energy of solvation -28.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds