Wall clock time and date at job start Mon Mar 30 2020 06:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48489 * 109.47210 * 299.99931 * 3 2 1 6 6 H 1.48504 * 109.46818 * 59.99934 * 3 2 1 7 7 C 1.37875 * 119.99566 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00073 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.38255 * 119.99975 * 89.99742 * 10 9 7 12 12 C 1.38219 * 120.00054 * 180.02562 * 11 10 9 13 13 C 1.38249 * 120.00097 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00408 * 179.97438 * 13 12 11 15 15 F 1.39904 * 109.46806 * 13.53852 * 14 13 12 16 16 F 1.39892 * 109.47183 * 133.53620 * 14 13 12 17 17 C 1.38216 * 119.99857 * 0.02562 * 13 12 11 18 18 C 1.50707 * 119.99850 * 179.97438 * 17 13 12 19 19 F 1.39902 * 109.46830 * 230.44874 * 18 17 13 20 20 F 1.39903 * 109.46973 * 110.45276 * 18 17 13 21 21 C 1.38218 * 120.00040 * 270.27974 * 10 9 7 22 22 H 0.97008 * 119.99684 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47349 * 60.00568 * 9 7 2 24 24 H 1.08996 * 109.47359 * 299.99777 * 9 7 2 25 25 H 1.08006 * 120.00060 * 0.02562 * 11 10 9 26 26 H 1.08005 * 119.99681 * 179.97438 * 12 11 10 27 27 H 1.08996 * 109.47244 * 253.54060 * 14 13 12 28 28 H 1.08992 * 109.47112 * 350.45099 * 18 17 13 29 29 H 1.07992 * 120.00141 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2301 -3.6446 0.0005 11 6 2.6793 -4.1701 1.1979 12 6 3.5778 -5.2203 1.1979 13 6 4.0278 -5.7451 0.0006 14 6 5.0079 -6.8899 0.0006 15 9 5.0762 -7.4453 1.2828 16 9 4.5851 -7.8657 -0.9083 17 6 3.5795 -5.2192 -1.1964 18 6 4.0705 -5.7909 -2.5015 19 9 4.5227 -4.7536 -3.3242 20 9 3.0240 -6.4677 -3.1371 21 6 2.6836 -4.1662 -1.1965 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 2.3281 -3.7598 2.1332 26 1 3.9290 -5.6305 2.1333 27 1 5.9929 -6.5249 -0.2902 28 1 4.8884 -6.4851 -2.3092 29 1 2.3359 -3.7531 -2.1317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396105821.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:51 Heat of formation + Delta-G solvation = -205.839618 kcal Electronic energy + Delta-G solvation = -19423.657396 eV Core-core repulsion = 15616.926568 eV Total energy + Delta-G solvation = -3806.730827 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.26292 -49.89140 -48.13228 -48.00218 -40.51277 -35.82145 -33.93672 -32.74443 -30.10582 -27.63810 -26.65207 -24.57436 -23.14861 -21.77680 -19.04454 -18.78212 -18.52323 -18.43654 -18.17213 -17.72454 -17.53050 -16.59865 -16.04636 -15.44994 -15.31854 -14.97873 -14.82874 -14.61942 -14.50298 -14.40983 -13.98131 -13.88970 -13.80041 -13.37384 -13.21705 -12.73108 -12.65717 -12.53463 -12.18655 -11.88917 -11.60514 -11.42021 -10.65166 -10.10400 -9.75246 -8.25313 -6.38521 -0.03860 0.22316 1.38697 1.39929 1.52657 2.34164 2.51962 2.59249 2.73695 3.07012 3.08679 3.20323 3.37746 3.58822 3.88806 3.99106 4.04737 4.15854 4.40440 4.46346 4.65189 4.81193 5.13468 5.19365 5.26905 5.28444 5.68415 5.77424 5.82666 6.09543 6.73797 7.30821 8.84934 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.024968 B = 0.005639 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.184357 B = 4964.377222 C = 5498.962280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.052 3.948 10 C -0.044 4.044 11 C -0.109 4.109 12 C -0.080 4.080 13 C -0.161 4.161 14 C 0.314 3.686 15 F -0.198 7.198 16 F -0.204 7.204 17 C -0.143 4.143 18 C 0.305 3.695 19 F -0.208 7.208 20 F -0.206 7.206 21 C -0.102 4.102 22 H 0.266 0.734 23 H 0.004 0.996 24 H 0.015 0.985 25 H 0.136 0.864 26 H 0.164 0.836 27 H 0.173 0.827 28 H 0.159 0.841 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.235 -13.506 0.053 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.076 0.924 9 C 0.015 3.985 10 C -0.044 4.044 11 C -0.127 4.127 12 C -0.098 4.098 13 C -0.162 4.162 14 C 0.261 3.739 15 F -0.179 7.179 16 F -0.186 7.186 17 C -0.144 4.144 18 C 0.252 3.748 19 F -0.189 7.189 20 F -0.187 7.187 21 C -0.120 4.120 22 H 0.075 0.925 23 H 0.022 0.978 24 H 0.033 0.967 25 H 0.154 0.846 26 H 0.181 0.819 27 H 0.190 0.810 28 H 0.176 0.824 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.066 -13.439 0.019 18.061 hybrid contribution -0.536 1.171 -0.227 1.308 sum 11.530 -12.269 -0.208 16.838 Atomic orbital electron populations 1.70080 1.07686 1.28034 1.50982 1.25910 0.95747 1.03134 0.94411 0.85376 0.78992 0.78658 0.77924 1.18764 1.20430 1.20020 1.21354 0.93164 0.90916 1.51393 0.92439 1.18181 0.92884 0.90895 0.96528 1.20558 0.95955 0.94538 0.93394 1.21353 0.97270 0.96088 0.98005 1.21174 0.95406 0.95010 0.98165 1.20266 1.02327 1.00115 0.93462 1.20702 0.99484 0.80828 0.72914 1.92977 1.97473 1.86855 1.40571 1.92979 1.92576 1.66108 1.66905 1.20131 1.00895 0.98955 0.94431 1.20990 0.88049 0.83670 0.82093 1.93000 1.89223 1.61804 1.74883 1.92990 1.61632 1.80380 1.83748 1.20836 0.97011 0.95768 0.98411 0.92467 0.97796 0.96720 0.84605 0.81850 0.81036 0.82441 0.86824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.63 15 2 C 0.01 0.37 5.46 84.65 0.46 0.83 15 3 Si 0.97 43.38 29.54 68.60 2.03 45.40 15 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 15 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 7 C -0.53 -29.42 9.09 25.60 0.23 -29.19 15 8 H 0.06 3.13 7.74 -2.91 -0.02 3.10 15 9 C 0.05 2.70 5.10 29.10 0.15 2.85 15 10 C -0.04 -1.87 5.07 -19.86 -0.10 -1.97 15 11 C -0.11 -3.79 9.70 22.27 0.22 -3.58 15 12 C -0.08 -2.18 9.42 22.27 0.21 -1.97 15 13 C -0.16 -4.15 5.70 -19.87 -0.11 -4.27 15 14 C 0.31 5.61 4.79 71.24 0.34 5.95 15 15 F -0.20 -3.86 16.10 44.97 0.72 -3.14 15 16 F -0.20 -4.17 14.84 44.97 0.67 -3.50 15 17 C -0.14 -4.41 5.36 -19.86 -0.11 -4.52 15 18 C 0.30 8.08 4.70 71.24 0.33 8.41 15 19 F -0.21 -6.21 17.11 44.97 0.77 -5.44 15 20 F -0.21 -6.26 17.32 44.97 0.78 -5.48 15 21 C -0.10 -3.96 9.18 22.27 0.20 -3.76 15 22 H 0.27 14.75 8.31 -92.70 -0.77 13.98 15 23 H 0.00 0.21 8.09 -2.39 -0.02 0.19 15 24 H 0.01 0.79 8.09 -2.39 -0.02 0.77 15 25 H 0.14 4.50 8.06 -2.91 -0.02 4.48 15 26 H 0.16 3.42 7.26 -2.91 -0.02 3.40 15 27 H 0.17 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.16 2.84 5.36 -2.39 -0.01 2.83 15 29 H 0.11 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -64.81 272.19 8.27 -56.54 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.19 Total: 1.45 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 1.83 Total: -31.20 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.28 Total: -54.63 kcal Atomic # 9 Polarization: -20.50 SS G_CDS: 2.94 Total: -17.56 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.81 8.27 -56.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396105821.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.302 kcal (2) G-P(sol) polarization free energy of solvation -64.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds