Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48501 * 109.46872 * 239.99781 * 3 2 1 5 5 H 1.48495 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46806 * 119.99964 * 3 2 1 7 7 C 1.37879 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47412 * 179.97438 * 9 7 2 11 11 C 1.38257 * 120.00351 * 265.23294 * 10 9 7 12 12 C 1.38202 * 120.00182 * 180.27243 * 11 10 9 13 13 C 1.50707 * 120.00208 * 179.72475 * 12 11 10 14 14 F 1.39901 * 109.46596 * 300.02199 * 13 12 11 15 15 F 1.39892 * 109.47087 * 60.02078 * 13 12 11 16 16 C 1.38261 * 120.00104 * 359.74802 * 12 11 10 17 17 C 1.38216 * 120.00045 * 359.97438 * 16 12 11 18 18 C 1.38217 * 119.99893 * 84.99649 * 10 9 7 19 19 C 1.50703 * 119.99908 * 0.02562 * 18 10 9 20 20 F 1.39904 * 109.46969 * 59.72356 * 19 18 10 21 21 F 1.39901 * 109.47086 * 299.72759 * 19 18 10 22 22 H 0.96998 * 119.99742 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47159 * 59.99397 * 9 7 2 24 24 H 1.08999 * 109.47238 * 300.00133 * 9 7 2 25 25 H 1.08005 * 119.99670 * 359.97438 * 11 10 9 26 26 H 1.09005 * 109.47007 * 180.02562 * 13 12 11 27 27 H 1.08000 * 120.00577 * 179.97438 * 16 12 11 28 28 H 1.07995 * 120.00133 * 179.97438 * 17 16 12 29 29 H 1.09002 * 109.47152 * 179.72427 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6038 -4.2348 -1.1926 12 6 3.4975 -5.2890 -1.1921 13 6 3.8999 -5.9364 -2.4922 14 9 2.7654 -6.4548 -3.1257 15 9 4.5023 -4.9836 -3.3207 16 6 4.0220 -5.7501 0.0011 17 6 3.6529 -5.1564 1.1935 18 6 2.7586 -4.1021 1.1930 19 6 2.3550 -3.4557 2.4932 20 9 0.9715 -3.5746 2.6633 21 9 2.7074 -2.1020 2.4700 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.1935 -3.8751 -2.1247 26 1 4.6056 -6.7431 -2.2932 27 1 4.7200 -6.5742 0.0017 28 1 4.0623 -5.5169 2.1256 29 1 2.8665 -3.9503 3.3189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396111068.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -186.893411 kcal Electronic energy + Delta-G solvation = -19729.021250 eV Core-core repulsion = 15923.111992 eV Total energy + Delta-G solvation = -3805.909258 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.86211 -48.22531 -46.85288 -46.14057 -39.10478 -33.73402 -32.38728 -31.35467 -27.57645 -27.22419 -24.08744 -23.32401 -21.72906 -20.20866 -17.44438 -17.08453 -16.99599 -16.63254 -16.52760 -16.38255 -16.26597 -14.56566 -14.39329 -13.93299 -13.79395 -13.70972 -13.23144 -13.16444 -12.72721 -12.58455 -12.50875 -12.35549 -11.89757 -11.82774 -11.28841 -11.17074 -11.02420 -10.70636 -10.56793 -10.07376 -9.66481 -9.45915 -8.84085 -8.36373 -8.17893 -5.99497 -4.01273 1.24739 1.70722 3.36759 3.39853 3.43490 3.81508 3.84988 4.20283 4.32871 4.49677 4.58342 4.72399 5.09591 5.14631 5.16281 5.33749 5.38261 5.68900 5.72548 5.88211 6.05335 6.33795 6.44242 6.66939 6.76347 7.18505 7.52239 7.65484 7.94317 8.28350 8.99233 9.60595 11.11223 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.007588 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.605515 B = 3689.224723 C = 4549.513039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.499 4.499 8 H 0.056 0.944 9 C 0.032 3.968 10 C 0.005 3.995 11 C -0.087 4.087 12 C -0.156 4.156 13 C 0.315 3.685 14 F -0.202 7.202 15 F -0.200 7.200 16 C -0.121 4.121 17 C -0.092 4.092 18 C -0.160 4.160 19 C 0.320 3.680 20 F -0.199 7.199 21 F -0.175 7.175 22 H 0.262 0.738 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.130 0.870 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.110 -12.800 1.571 15.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.537 4.537 8 H 0.074 0.926 9 C -0.005 4.005 10 C 0.005 3.995 11 C -0.105 4.105 12 C -0.157 4.157 13 C 0.261 3.739 14 F -0.183 7.183 15 F -0.181 7.181 16 C -0.139 4.139 17 C -0.110 4.110 18 C -0.161 4.161 19 C 0.266 3.734 20 F -0.180 7.180 21 F -0.156 7.156 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.148 0.852 26 H 0.132 0.868 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.910 -12.630 1.537 14.981 hybrid contribution 0.364 1.059 -0.163 1.132 sum 8.274 -11.571 1.374 14.291 Atomic orbital electron populations 1.69946 1.05992 1.26856 1.50482 1.24920 0.94818 0.99082 0.95159 0.86605 0.79565 0.82893 0.78706 1.20256 1.21290 1.20067 1.20808 0.92740 0.89232 1.50965 0.92560 1.18680 0.92682 0.89241 0.99898 1.20671 0.94266 0.94002 0.90545 1.20968 0.96287 0.94234 0.99047 1.20383 1.01609 0.99764 0.93973 1.20393 0.82578 0.87621 0.83308 1.93006 1.54186 1.87140 1.83943 1.93018 1.83478 1.67235 1.74360 1.20580 1.01181 1.00883 0.91295 1.20761 0.96938 0.95283 0.98059 1.20503 1.01220 0.98878 0.95460 1.20102 0.77511 0.80300 0.95521 1.92969 1.32862 1.95912 1.96246 1.93150 1.91276 1.33777 1.97378 0.92837 0.94996 0.93275 0.85225 0.86830 0.85635 0.85499 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.29 55.43 0.74 -26.06 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.50 -14.00 7.20 -34.44 -0.25 -14.24 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.03 0.82 4.46 -29.04 -0.13 0.69 15 10 C 0.01 0.11 5.04 -104.62 -0.53 -0.41 15 11 C -0.09 -1.68 9.23 -39.59 -0.37 -2.04 15 12 C -0.16 -2.42 5.37 -104.62 -0.56 -2.98 15 13 C 0.31 4.10 5.45 36.01 0.20 4.30 15 14 F -0.20 -2.95 17.26 2.25 0.04 -2.91 15 15 F -0.20 -3.04 17.26 2.25 0.04 -3.00 15 16 C -0.12 -1.59 9.67 -39.58 -0.38 -1.97 15 17 C -0.09 -1.30 9.67 -39.58 -0.38 -1.68 15 18 C -0.16 -2.91 5.37 -104.62 -0.56 -3.48 15 19 C 0.32 5.74 4.97 36.01 0.18 5.92 15 20 F -0.20 -4.02 15.33 2.25 0.03 -3.99 15 21 F -0.17 -3.85 14.95 2.25 0.03 -3.82 15 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 23 H 0.03 0.87 8.05 -51.93 -0.42 0.45 15 24 H 0.05 1.35 5.74 -51.93 -0.30 1.05 15 25 H 0.13 2.54 8.06 -52.48 -0.42 2.12 15 26 H 0.11 0.97 7.88 -51.93 -0.41 0.56 15 27 H 0.13 1.14 7.95 -52.49 -0.42 0.72 15 28 H 0.13 1.29 7.95 -52.49 -0.42 0.87 15 29 H 0.10 1.26 7.88 -51.93 -0.41 0.85 15 LS Contribution 270.38 15.07 4.07 4.07 Total: -1.00 -31.90 270.38 -5.28 -37.18 By element: Atomic # 1 Polarization: -1.98 SS G_CDS: -2.33 Total: -4.31 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.88 Total: -14.23 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.06 kcal Atomic # 9 Polarization: -13.85 SS G_CDS: 0.15 Total: -13.71 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.90 -5.28 -37.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396111068.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.714 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds