Wall clock time and date at job start Mon Mar 30 2020 06:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48501 * 109.46872 * 239.99781 * 3 2 1 5 5 H 1.48495 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46806 * 119.99964 * 3 2 1 7 7 C 1.37879 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00185 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.47412 * 179.97438 * 9 7 2 11 11 C 1.38257 * 120.00351 * 265.23294 * 10 9 7 12 12 C 1.38202 * 120.00182 * 180.27243 * 11 10 9 13 13 C 1.50707 * 120.00208 * 179.72475 * 12 11 10 14 14 F 1.39901 * 109.46596 * 300.02199 * 13 12 11 15 15 F 1.39892 * 109.47087 * 60.02078 * 13 12 11 16 16 C 1.38261 * 120.00104 * 359.74802 * 12 11 10 17 17 C 1.38216 * 120.00045 * 359.97438 * 16 12 11 18 18 C 1.38217 * 119.99893 * 84.99649 * 10 9 7 19 19 C 1.50703 * 119.99908 * 0.02562 * 18 10 9 20 20 F 1.39904 * 109.46969 * 59.72356 * 19 18 10 21 21 F 1.39901 * 109.47086 * 299.72759 * 19 18 10 22 22 H 0.96998 * 119.99742 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47159 * 59.99397 * 9 7 2 24 24 H 1.08999 * 109.47238 * 300.00133 * 9 7 2 25 25 H 1.08005 * 119.99670 * 359.97438 * 11 10 9 26 26 H 1.09005 * 109.47007 * 180.02562 * 13 12 11 27 27 H 1.08000 * 120.00577 * 179.97438 * 16 12 11 28 28 H 1.07995 * 120.00133 * 179.97438 * 17 16 12 29 29 H 1.09002 * 109.47152 * 179.72427 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6038 -4.2348 -1.1926 12 6 3.4975 -5.2890 -1.1921 13 6 3.8999 -5.9364 -2.4922 14 9 2.7654 -6.4548 -3.1257 15 9 4.5023 -4.9836 -3.3207 16 6 4.0220 -5.7501 0.0011 17 6 3.6529 -5.1564 1.1935 18 6 2.7586 -4.1021 1.1930 19 6 2.3550 -3.4557 2.4932 20 9 0.9715 -3.5746 2.6633 21 9 2.7074 -2.1020 2.4700 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.1935 -3.8751 -2.1247 26 1 4.6056 -6.7431 -2.2932 27 1 4.7200 -6.5742 0.0017 28 1 4.0623 -5.5169 2.1256 29 1 2.8665 -3.9503 3.3189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396111068.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:02 Heat of formation + Delta-G solvation = -205.984420 kcal Electronic energy + Delta-G solvation = -19729.849098 eV Core-core repulsion = 15923.111992 eV Total energy + Delta-G solvation = -3806.737106 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.93458 -49.72375 -47.94739 -47.68620 -40.40842 -35.61023 -33.86599 -32.95137 -29.29418 -28.53679 -25.70082 -24.85504 -23.11356 -21.58916 -18.64331 -18.56877 -18.23895 -18.15736 -17.91053 -17.86028 -17.77656 -16.54324 -15.73342 -15.27461 -14.95341 -14.91497 -14.79258 -14.41771 -14.33648 -14.14953 -14.07083 -13.74708 -13.52047 -13.37389 -12.98167 -12.87669 -12.60635 -12.38080 -12.12483 -11.69734 -11.58362 -11.27834 -10.58286 -10.10057 -9.63832 -8.19701 -6.28946 -0.03053 0.43324 1.35755 1.39584 1.46912 2.37383 2.58282 2.79312 3.04867 3.12693 3.28901 3.41028 3.63706 3.81828 4.04160 4.10571 4.25233 4.29862 4.39358 4.62284 4.73312 4.99098 5.12132 5.24267 5.33426 5.36806 5.72541 5.76624 5.90762 6.13429 6.78578 7.36635 8.91101 Molecular weight = 262.07amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.007588 C = 0.006153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.605515 B = 3689.224723 C = 4549.513039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.042 3.958 10 C -0.039 4.039 11 C -0.116 4.116 12 C -0.158 4.158 13 C 0.311 3.689 14 F -0.215 7.215 15 F -0.217 7.217 16 C -0.095 4.095 17 C -0.076 4.076 18 C -0.174 4.174 19 C 0.302 3.698 20 F -0.220 7.220 21 F -0.206 7.206 22 H 0.263 0.737 23 H -0.007 1.007 24 H 0.023 0.977 25 H 0.101 0.899 26 H 0.180 0.820 27 H 0.189 0.811 28 H 0.183 0.817 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.482 -15.209 2.705 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.006 3.994 10 C -0.039 4.039 11 C -0.134 4.134 12 C -0.159 4.159 13 C 0.258 3.742 14 F -0.196 7.196 15 F -0.198 7.198 16 C -0.113 4.113 17 C -0.094 4.094 18 C -0.175 4.175 19 C 0.250 3.750 20 F -0.201 7.201 21 F -0.187 7.187 22 H 0.072 0.928 23 H 0.011 0.989 24 H 0.041 0.959 25 H 0.119 0.881 26 H 0.197 0.803 27 H 0.206 0.794 28 H 0.200 0.800 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.287 -15.048 2.665 18.998 hybrid contribution -0.654 1.671 -0.515 1.867 sum 10.633 -13.377 2.149 17.223 Atomic orbital electron populations 1.70083 1.07638 1.27723 1.51928 1.25836 0.95678 1.02914 0.94926 0.85582 0.78417 0.78521 0.79086 1.19358 1.20568 1.19253 1.21069 0.92516 0.90620 1.49908 0.93109 1.18313 0.93190 0.91328 0.96612 1.20283 0.95910 0.94508 0.93246 1.20827 0.98665 0.96661 0.97267 1.20766 1.00145 0.98233 0.96770 1.21037 0.83123 0.88529 0.81518 1.92982 1.55391 1.87161 1.84114 1.92986 1.83630 1.68361 1.74813 1.21313 0.99769 1.00791 0.89391 1.21374 0.94364 0.92702 1.00926 1.20722 1.02336 1.00444 0.94001 1.21006 0.76876 0.79144 0.98013 1.92919 1.34948 1.95862 1.96402 1.93070 1.91433 1.36599 1.97635 0.92799 0.98881 0.95927 0.88069 0.80341 0.79422 0.79987 0.81430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.94 13.29 21.45 0.28 -58.65 15 2 C 0.00 0.23 5.46 84.65 0.46 0.70 15 3 Si 0.96 46.57 29.54 68.60 2.03 48.59 15 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 5 H -0.28 -13.19 7.11 99.48 0.71 -12.48 15 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 7 C -0.50 -29.73 7.20 25.60 0.18 -29.55 15 8 H 0.05 2.97 7.74 -2.91 -0.02 2.95 15 9 C 0.04 2.37 4.46 29.10 0.13 2.50 15 10 C -0.04 -1.74 5.04 -19.87 -0.10 -1.84 15 11 C -0.12 -4.60 9.23 22.27 0.21 -4.39 15 12 C -0.16 -4.46 5.37 -19.87 -0.11 -4.56 15 13 C 0.31 7.06 5.45 71.24 0.39 7.44 15 14 F -0.22 -5.94 17.26 44.97 0.78 -5.17 15 15 F -0.22 -6.22 17.26 44.97 0.78 -5.44 15 16 C -0.10 -1.91 9.67 22.27 0.22 -1.70 15 17 C -0.08 -1.72 9.67 22.27 0.22 -1.51 15 18 C -0.17 -6.10 5.37 -19.86 -0.11 -6.21 15 19 C 0.30 10.53 4.97 71.24 0.35 10.88 15 20 F -0.22 -9.12 15.33 44.97 0.69 -8.43 15 21 F -0.21 -9.20 14.95 44.97 0.67 -8.52 15 22 H 0.26 15.67 8.31 -92.71 -0.77 14.90 15 23 H -0.01 -0.44 8.05 -2.39 -0.02 -0.46 15 24 H 0.02 1.35 5.74 -2.39 -0.01 1.34 15 25 H 0.10 4.38 8.06 -2.91 -0.02 4.36 15 26 H 0.18 1.83 7.88 -2.38 -0.02 1.81 15 27 H 0.19 1.57 7.95 -2.91 -0.02 1.55 15 28 H 0.18 2.16 7.95 -2.91 -0.02 2.14 15 29 H 0.17 3.49 7.88 -2.39 -0.02 3.47 15 Total: -1.00 -78.26 270.38 8.25 -70.00 By element: Atomic # 1 Polarization: -5.32 SS G_CDS: 1.19 Total: -4.14 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 1.84 Total: -28.24 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.28 Total: -58.65 kcal Atomic # 9 Polarization: -30.48 SS G_CDS: 2.91 Total: -27.57 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.26 8.25 -70.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396111068.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.983 kcal (2) G-P(sol) polarization free energy of solvation -78.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds