Wall clock time and date at job start Mon Mar 30 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47465 * 2 1 4 4 C 1.37790 * 119.54686 * 264.98038 * 3 2 1 5 5 C 1.37889 * 120.76757 * 179.73400 * 4 3 2 6 6 C 1.50699 * 120.06418 * 180.29821 * 5 4 3 7 7 O 1.42897 * 109.46645 * 0.26225 * 6 5 4 8 8 C 1.40415 * 119.87781 * 0.56528 * 5 4 3 9 9 C 1.40921 * 120.11458 * 179.71997 * 8 5 4 10 10 H 1.08003 * 119.99917 * 323.11976 * 9 8 5 11 11 C 1.39929 * 120.00427 * 143.12367 * 9 8 5 12 12 N 1.30870 * 119.99776 * 332.06127 * 11 9 8 13 13 Si 1.86800 * 120.00356 * 152.05910 * 11 9 8 14 14 H 1.48500 * 109.47236 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.47067 * 300.00097 * 13 11 9 16 16 H 1.48507 * 109.46970 * 59.99722 * 13 11 9 17 17 C 1.42162 * 119.76681 * 359.43797 * 8 5 4 18 18 S 1.75897 * 130.54022 * 180.30734 * 17 8 5 19 19 C 1.75309 * 92.17093 * 179.97438 * 18 17 8 20 20 C 1.31858 * 111.34140 * 359.97438 * 19 18 17 21 21 C 1.39425 * 119.69371 * 0.27878 * 17 8 5 22 22 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46930 * 300.00255 * 1 2 3 24 24 H 1.08999 * 109.46835 * 59.99962 * 1 2 3 25 25 H 1.08997 * 109.46930 * 239.99744 * 2 1 3 26 26 H 1.08999 * 109.46835 * 120.00038 * 2 1 3 27 27 H 1.08002 * 119.61617 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.47003 * 120.25899 * 6 5 4 29 29 H 1.09001 * 109.47264 * 240.26840 * 6 5 4 30 30 H 0.96709 * 114.00179 * 179.97438 * 7 6 5 31 31 H 0.96999 * 119.99770 * 357.59097 * 12 11 9 32 32 H 1.07999 * 124.32824 * 180.02562 * 19 18 17 33 33 H 1.08002 * 122.55777 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3579 2.0264 -1.1941 5 6 2.8147 3.3271 -1.2239 6 6 3.1597 3.9762 -2.5394 7 8 2.9256 3.0508 -3.6029 8 6 2.9633 4.0438 -0.0256 9 6 3.4354 5.3714 -0.0497 10 1 4.1975 5.6607 -0.7582 11 6 2.9169 6.3148 0.8442 12 7 1.6967 6.1839 1.2988 13 14 3.9663 7.7611 1.3888 14 1 3.1914 8.6081 2.3307 15 1 5.1884 7.2585 2.0664 16 1 4.3537 8.5660 0.2024 17 6 2.6301 3.4276 1.2114 18 16 2.6975 4.0519 2.8545 19 6 2.1016 2.5447 3.5227 20 6 1.8750 1.6561 2.5752 21 6 2.1637 2.1137 1.2250 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2494 1.4776 -2.1179 28 1 2.5375 4.8595 -2.6829 29 1 4.2099 4.2680 -2.5363 30 1 3.1265 3.4021 -4.4813 31 1 1.1397 5.4525 0.9894 32 1 1.9399 2.3670 4.5756 33 1 1.5036 0.6640 2.7856 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396289419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:34 Heat of formation + Delta-G solvation = -38.414195 kcal Electronic energy + Delta-G solvation = -17527.676760 eV Core-core repulsion = 14836.275961 eV Total energy + Delta-G solvation = -2691.400800 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.60897 -36.28697 -34.86142 -33.85473 -32.42479 -28.94555 -28.70341 -25.51935 -24.72751 -22.48483 -21.85433 -20.12274 -19.05183 -17.91309 -16.81505 -15.70239 -15.00461 -14.29909 -14.22455 -14.02823 -13.90169 -13.38274 -13.20277 -12.80183 -12.51844 -12.40248 -11.87229 -11.51495 -11.39777 -11.20746 -10.90569 -10.63195 -10.45123 -10.41025 -10.22345 -10.07567 -9.55006 -9.44931 -9.27618 -8.78417 -8.24322 -7.42531 -7.20148 -6.40216 -4.55375 1.87291 2.66433 2.77974 3.10171 3.15221 3.32024 3.33591 3.43923 3.97002 4.48134 4.96104 5.13540 5.54029 5.64966 5.68277 6.01057 6.02407 6.10006 6.22683 6.28819 6.35823 6.38859 6.43369 6.57856 6.73391 6.75878 6.80705 7.10936 7.26867 7.34746 7.60967 7.73498 7.79656 7.95121 8.11029 8.29367 8.56599 8.70397 9.95079 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.010299 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.659747 B = 2718.070564 C = 4079.312410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.181 4.181 4 C -0.047 4.047 5 C -0.199 4.199 6 C 0.150 3.850 7 O -0.578 6.578 8 C 0.134 3.866 9 C -0.533 4.533 10 H 0.081 0.919 11 C 0.033 3.967 12 N -0.765 5.765 13 Si 1.054 2.946 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.276 1.276 17 C -0.203 4.203 18 S 0.096 5.904 19 C -0.230 4.230 20 C -0.130 4.130 21 C -0.037 4.037 22 H 0.042 0.958 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.107 0.893 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.367 0.633 31 H 0.297 0.703 32 H 0.146 0.854 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -3.504 -0.954 3.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.184 4.184 4 C -0.067 4.067 5 C -0.203 4.203 6 C 0.074 3.926 7 O -0.382 6.382 8 C 0.128 3.872 9 C -0.560 4.560 10 H 0.099 0.901 11 C -0.190 4.190 12 N -0.387 5.387 13 Si 0.877 3.123 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.201 1.201 17 C -0.319 4.319 18 S 0.362 5.638 19 C -0.365 4.365 20 C -0.163 4.163 21 C -0.044 4.044 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.125 0.875 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.212 0.788 31 H 0.110 0.890 32 H 0.163 0.837 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.883 -1.160 1.291 1.947 hybrid contribution -0.313 -2.359 -1.957 3.081 sum 0.569 -3.519 -0.666 3.626 Atomic orbital electron populations 1.21762 0.96494 0.99856 1.01880 1.20148 0.94801 0.94195 1.00544 1.18959 1.12381 0.95838 0.91221 1.20107 0.96747 0.94145 0.95658 1.19265 1.12900 0.96128 0.92045 1.20490 0.97773 0.89818 0.84553 1.86450 1.90852 1.43562 1.17309 1.16603 0.89979 0.93029 0.87555 1.20336 1.22081 0.94497 1.19112 0.90087 1.26877 0.96410 1.02886 0.92859 1.70480 1.05492 1.27983 1.34752 0.83753 0.76079 0.74781 0.77658 1.19499 1.19645 1.20114 1.22598 1.16191 0.96908 0.96202 1.84120 1.69809 1.11563 0.98358 1.25242 1.08725 1.00303 1.02187 1.20810 1.04343 0.99567 0.91575 1.18831 1.00390 0.92995 0.92216 0.93916 0.93022 0.93031 0.92734 0.92867 0.87540 0.93699 0.94304 0.78797 0.88973 0.83663 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.90 37.16 0.37 -1.95 16 2 C -0.06 -1.07 5.83 -27.88 -0.16 -1.23 16 3 C -0.18 -3.99 5.21 -103.60 -0.54 -4.53 16 4 C -0.05 -1.08 8.93 -39.87 -0.36 -1.44 16 5 C -0.20 -4.79 5.94 -103.93 -0.62 -5.40 16 6 C 0.15 3.10 6.34 36.01 0.23 3.33 16 7 O -0.58 -10.47 12.13 -35.23 -0.43 -10.89 16 8 C 0.13 3.46 5.01 -106.56 -0.53 2.93 16 9 C -0.53 -13.51 8.11 -37.93 -0.31 -13.82 16 10 H 0.08 1.99 7.38 -52.48 -0.39 1.61 16 11 C 0.03 0.82 3.98 -17.33 -0.07 0.75 16 12 N -0.76 -19.71 11.60 55.55 0.64 -19.06 16 13 Si 1.05 21.38 30.01 -169.99 -5.10 16.27 16 14 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 15 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 16 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 17 C -0.20 -5.12 5.29 -37.64 -0.20 -5.31 16 18 S 0.10 2.22 19.88 -107.50 -2.14 0.08 16 19 C -0.23 -4.60 11.02 28.83 0.32 -4.29 16 20 C -0.13 -2.68 9.81 -38.61 -0.38 -3.06 16 21 C -0.04 -0.86 5.97 -105.40 -0.63 -1.49 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 26 H 0.05 0.90 7.48 -51.93 -0.39 0.52 16 27 H 0.11 2.32 6.96 -52.49 -0.37 1.95 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.77 7.82 -51.93 -0.41 0.37 16 30 H 0.37 4.54 9.12 45.56 0.42 4.95 16 31 H 0.30 8.07 7.12 -40.82 -0.29 7.78 16 32 H 0.15 2.40 8.06 -52.49 -0.42 1.97 16 33 H 0.12 2.15 7.66 -52.49 -0.40 1.75 16 LS Contribution 288.45 15.07 4.35 4.35 Total: -1.00 -27.97 288.45 -8.70 -36.68 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -3.15 Total: 8.08 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: -2.88 Total: -35.50 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.64 Total: -19.06 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.43 Total: -10.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.10 Total: 16.27 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.14 Total: 0.08 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.97 -8.70 -36.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.736 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds