Wall clock time and date at job start Mon Mar 30 2020 06:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47465 * 2 1 4 4 C 1.37790 * 119.54686 * 264.98038 * 3 2 1 5 5 C 1.37889 * 120.76757 * 179.73400 * 4 3 2 6 6 C 1.50699 * 120.06418 * 180.29821 * 5 4 3 7 7 O 1.42897 * 109.46645 * 0.26225 * 6 5 4 8 8 C 1.40415 * 119.87781 * 0.56528 * 5 4 3 9 9 C 1.40921 * 120.11458 * 179.71997 * 8 5 4 10 10 H 1.08003 * 119.99917 * 323.11976 * 9 8 5 11 11 C 1.39929 * 120.00427 * 143.12367 * 9 8 5 12 12 N 1.30870 * 119.99776 * 332.06127 * 11 9 8 13 13 Si 1.86800 * 120.00356 * 152.05910 * 11 9 8 14 14 H 1.48500 * 109.47236 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.47067 * 300.00097 * 13 11 9 16 16 H 1.48507 * 109.46970 * 59.99722 * 13 11 9 17 17 C 1.42162 * 119.76681 * 359.43797 * 8 5 4 18 18 S 1.75897 * 130.54022 * 180.30734 * 17 8 5 19 19 C 1.75309 * 92.17093 * 179.97438 * 18 17 8 20 20 C 1.31858 * 111.34140 * 359.97438 * 19 18 17 21 21 C 1.39425 * 119.69371 * 0.27878 * 17 8 5 22 22 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46930 * 300.00255 * 1 2 3 24 24 H 1.08999 * 109.46835 * 59.99962 * 1 2 3 25 25 H 1.08997 * 109.46930 * 239.99744 * 2 1 3 26 26 H 1.08999 * 109.46835 * 120.00038 * 2 1 3 27 27 H 1.08002 * 119.61617 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.47003 * 120.25899 * 6 5 4 29 29 H 1.09001 * 109.47264 * 240.26840 * 6 5 4 30 30 H 0.96709 * 114.00179 * 179.97438 * 7 6 5 31 31 H 0.96999 * 119.99770 * 357.59097 * 12 11 9 32 32 H 1.07999 * 124.32824 * 180.02562 * 19 18 17 33 33 H 1.08002 * 122.55777 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3579 2.0264 -1.1941 5 6 2.8147 3.3271 -1.2239 6 6 3.1597 3.9762 -2.5394 7 8 2.9256 3.0508 -3.6029 8 6 2.9633 4.0438 -0.0256 9 6 3.4354 5.3714 -0.0497 10 1 4.1975 5.6607 -0.7582 11 6 2.9169 6.3148 0.8442 12 7 1.6967 6.1839 1.2988 13 14 3.9663 7.7611 1.3888 14 1 3.1914 8.6081 2.3307 15 1 5.1884 7.2585 2.0664 16 1 4.3537 8.5660 0.2024 17 6 2.6301 3.4276 1.2114 18 16 2.6975 4.0519 2.8545 19 6 2.1016 2.5447 3.5227 20 6 1.8750 1.6561 2.5752 21 6 2.1637 2.1137 1.2250 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.2494 1.4776 -2.1179 28 1 2.5375 4.8595 -2.6829 29 1 4.2099 4.2680 -2.5363 30 1 3.1265 3.4021 -4.4813 31 1 1.1397 5.4525 0.9894 32 1 1.9399 2.3670 4.5756 33 1 1.5036 0.6640 2.7856 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396289419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:34 Heat of formation + Delta-G solvation = -54.421577 kcal Electronic energy + Delta-G solvation = -17528.370893 eV Core-core repulsion = 14836.275961 eV Total energy + Delta-G solvation = -2692.094932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34076 -37.84024 -36.59334 -35.46135 -34.07120 -30.57879 -30.44129 -27.25286 -26.39700 -24.06302 -23.57837 -21.74224 -20.78358 -19.69203 -18.35541 -17.40694 -16.66322 -15.99251 -15.86510 -15.65729 -15.54206 -15.01812 -14.66831 -14.38804 -14.15025 -14.08959 -13.51266 -13.11987 -13.00411 -12.70363 -12.54595 -12.24640 -12.04006 -11.94693 -11.77899 -11.72137 -11.25523 -11.12562 -10.89257 -10.58103 -10.01283 -9.30475 -8.98871 -8.19095 -6.44386 0.16034 0.84337 1.08101 1.46387 1.50419 1.60211 1.73915 1.76006 2.30292 2.68731 3.31900 3.51748 3.97962 4.19013 4.26448 4.38924 4.53520 4.62272 4.66450 4.69119 4.72511 4.90418 5.01537 5.06765 5.09620 5.16896 5.35797 5.43370 5.49670 5.62261 5.78754 5.85547 6.03591 6.12887 6.35772 6.72368 6.86658 6.98871 8.02296 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.017188 B = 0.010299 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.659747 B = 2718.070564 C = 4079.312410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.065 4.065 5 C -0.217 4.217 6 C 0.161 3.839 7 O -0.582 6.582 8 C 0.103 3.897 9 C -0.558 4.558 10 H 0.077 0.923 11 C 0.007 3.993 12 N -0.784 5.784 13 Si 1.092 2.908 14 H -0.269 1.269 15 H -0.266 1.266 16 H -0.256 1.256 17 C -0.231 4.231 18 S 0.060 5.940 19 C -0.216 4.216 20 C -0.133 4.133 21 C -0.060 4.060 22 H 0.076 0.924 23 H 0.041 0.959 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.393 0.607 31 H 0.277 0.723 32 H 0.186 0.814 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 -5.050 -0.594 5.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.096 4.096 3 C -0.177 4.177 4 C -0.084 4.084 5 C -0.221 4.221 6 C 0.084 3.916 7 O -0.390 6.390 8 C 0.097 3.903 9 C -0.587 4.587 10 H 0.095 0.905 11 C -0.212 4.212 12 N -0.406 5.406 13 Si 0.910 3.090 14 H -0.193 1.193 15 H -0.190 1.190 16 H -0.180 1.180 17 C -0.346 4.346 18 S 0.325 5.675 19 C -0.350 4.350 20 C -0.164 4.164 21 C -0.067 4.067 22 H 0.094 0.906 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.243 0.757 31 H 0.088 0.912 32 H 0.203 0.797 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.771 -2.722 1.611 3.256 hybrid contribution -0.306 -2.073 -2.146 2.999 sum 0.466 -4.795 -0.536 4.847 Atomic orbital electron populations 1.21697 0.94997 1.01773 1.00938 1.20233 0.95953 0.91480 1.01945 1.19535 1.09920 0.97723 0.90512 1.20350 0.97362 0.94098 0.96617 1.19781 1.12302 0.96871 0.93156 1.20234 0.97692 0.89500 0.84190 1.86375 1.90905 1.43277 1.18475 1.16974 0.91018 0.93700 0.88605 1.20419 1.22922 0.95026 1.20295 0.90499 1.27965 0.96416 1.04554 0.92249 1.70597 1.06134 1.27698 1.36135 0.83298 0.74912 0.72609 0.78143 1.19304 1.19039 1.17988 1.22924 1.16917 0.98023 0.96762 1.84085 1.70883 1.14316 0.98266 1.25579 1.07331 0.98014 1.04031 1.21061 1.04139 1.01121 0.90095 1.19350 1.00536 0.92714 0.94121 0.90554 0.93940 0.94049 0.91404 0.91386 0.86497 0.94327 0.93911 0.75741 0.91174 0.79705 0.82653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.90 71.98 0.71 -3.33 16 2 C -0.06 -1.94 5.83 29.85 0.17 -1.76 16 3 C -0.17 -7.48 5.21 -19.21 -0.10 -7.58 16 4 C -0.06 -2.95 8.93 22.08 0.20 -2.75 16 5 C -0.22 -10.61 5.94 -19.42 -0.12 -10.72 16 6 C 0.16 6.69 6.34 71.24 0.45 7.14 16 7 O -0.58 -20.48 12.13 -148.98 -1.81 -22.29 16 8 C 0.10 5.46 5.01 -21.12 -0.11 5.35 16 9 C -0.56 -29.29 8.11 23.34 0.19 -29.10 16 10 H 0.08 3.93 7.38 -2.91 -0.02 3.91 16 11 C 0.01 0.34 3.98 85.25 0.34 0.68 16 12 N -0.78 -41.68 11.60 21.83 0.25 -41.43 16 13 Si 1.09 43.45 30.01 68.60 2.06 45.51 16 14 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 15 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 16 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 17 C -0.23 -11.80 5.29 23.53 0.12 -11.68 16 18 S 0.06 2.78 19.88 -56.49 -1.12 1.66 16 19 C -0.22 -8.17 11.02 67.01 0.74 -7.43 16 20 C -0.13 -5.14 9.81 23.32 0.23 -4.91 16 21 C -0.06 -2.74 5.97 -20.37 -0.12 -2.86 16 22 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 2.06 8.03 -2.39 -0.02 2.05 16 26 H 0.07 2.06 7.48 -2.39 -0.02 2.04 16 27 H 0.12 4.98 6.96 -2.91 -0.02 4.96 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.73 7.82 -2.39 -0.02 1.71 16 30 H 0.39 9.05 9.12 -74.05 -0.68 8.37 16 31 H 0.28 15.75 7.12 -92.71 -0.66 15.09 16 32 H 0.19 5.41 8.06 -2.91 -0.02 5.39 16 33 H 0.16 4.88 7.66 -2.91 -0.02 4.86 16 Total: -1.00 -61.70 288.45 2.66 -59.04 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.56 Total: 26.45 kcal Atomic # 6 Polarization: -71.66 SS G_CDS: 2.71 Total: -68.95 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.25 Total: -41.43 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.81 Total: -22.29 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.06 Total: 45.51 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.12 Total: 1.66 kcal Total: -61.70 2.66 -59.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.623 kcal (2) G-P(sol) polarization free energy of solvation -61.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds