Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46823 * 2 1 4 4 C 1.38167 * 119.27126 * 265.22672 * 3 2 1 5 5 C 1.37607 * 121.08347 * 180.28635 * 4 3 2 6 6 C 1.50703 * 119.93001 * 179.74349 * 5 4 3 7 7 O 1.42908 * 109.46769 * 357.71858 * 6 5 4 8 8 C 1.40359 * 120.14232 * 359.46708 * 5 4 3 9 9 C 1.40574 * 120.40502 * 180.25546 * 8 5 4 10 10 H 1.08000 * 119.99980 * 320.45512 * 9 8 5 11 11 C 1.40001 * 120.00194 * 140.46651 * 9 8 5 12 12 N 1.30833 * 119.99830 * 339.48742 * 11 9 8 13 13 Si 1.86793 * 120.00317 * 159.48756 * 11 9 8 14 14 H 1.48504 * 109.46922 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47150 * 119.99826 * 13 11 9 16 16 H 1.48498 * 109.47603 * 239.99756 * 13 11 9 17 17 C 1.47841 * 119.18535 * 0.27251 * 8 5 4 18 18 C 1.39982 * 129.23804 * 180.02562 * 17 8 5 19 19 C 1.32715 * 115.80913 * 180.02562 * 18 17 8 20 20 S 1.75516 * 110.67755 * 359.97438 * 19 18 17 21 21 C 1.39602 * 119.28142 * 84.99841 * 3 2 1 22 22 H 1.09001 * 109.47715 * 300.00029 * 1 2 3 23 23 H 1.09001 * 109.47390 * 60.00670 * 1 2 3 24 24 H 1.09005 * 109.46799 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47605 * 239.99512 * 2 1 3 26 26 H 1.09001 * 109.47390 * 119.99330 * 2 1 3 27 27 H 1.07991 * 119.45678 * 0.05288 * 4 3 2 28 28 H 1.08997 * 109.47029 * 237.72632 * 6 5 4 29 29 H 1.08999 * 109.47627 * 117.71587 * 6 5 4 30 30 H 0.96704 * 113.99400 * 180.02562 * 7 6 5 31 31 H 0.97003 * 120.00332 * 177.28645 * 12 11 9 32 32 H 1.08000 * 122.09538 * 359.97438 * 18 17 8 33 33 H 1.08006 * 124.66361 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3520 2.0244 -1.2011 5 6 2.8193 3.3180 -1.2440 6 6 3.1656 3.9488 -2.5680 7 8 2.9759 2.9943 -3.6145 8 6 2.9686 4.0531 -0.0576 9 6 3.4405 5.3767 -0.0955 10 1 4.2341 5.6479 -0.7760 11 6 2.8819 6.3435 0.7491 12 7 1.6961 6.1524 1.2679 13 14 3.8295 7.9062 1.1353 14 1 5.1360 7.8799 0.4300 15 1 3.0463 9.0844 0.6839 16 1 4.0597 7.9965 2.5996 17 6 2.6239 3.4181 1.2322 18 6 2.6903 3.9485 2.5259 19 6 2.3123 3.1350 3.5040 20 16 1.8223 1.5775 2.8602 21 6 2.1597 2.1000 1.2130 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 2.2367 1.4705 -2.1210 28 1 4.2065 4.2719 -2.5554 29 1 2.5199 4.8099 -2.7403 30 1 3.1809 3.3323 -4.4971 31 1 1.3256 6.8035 1.8841 32 1 3.0288 4.9563 2.7163 33 1 2.3061 3.3958 4.5521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396289537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -27.856285 kcal Electronic energy + Delta-G solvation = -17482.878475 eV Core-core repulsion = 14791.935501 eV Total energy + Delta-G solvation = -2690.942974 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.44913 -36.18630 -34.82914 -33.80217 -32.42221 -29.23239 -28.38942 -25.68253 -24.69288 -22.54408 -22.05256 -19.67290 -18.63827 -17.82325 -16.76190 -15.75418 -15.06782 -14.60145 -14.10848 -14.04627 -13.83557 -13.37290 -13.10446 -12.75126 -12.38913 -12.03310 -11.76648 -11.59911 -11.47466 -11.18450 -10.93099 -10.81811 -10.49338 -10.45553 -10.22940 -10.09054 -9.84533 -9.26778 -9.25106 -9.05181 -8.02656 -7.11706 -7.07150 -6.46170 -4.53695 1.99803 2.57809 2.75840 2.97318 2.99747 3.02668 3.15416 3.71345 3.78784 4.42127 4.97793 5.25332 5.69135 5.72722 5.96350 6.07731 6.11849 6.27406 6.34157 6.38216 6.43168 6.49797 6.60219 6.71681 6.82594 6.85517 6.96708 7.09627 7.25408 7.38814 7.70348 7.77115 7.83077 8.02874 8.22898 8.31406 8.60537 8.68135 9.96660 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.009933 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.301276 B = 2818.259236 C = 4241.110880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.188 4.188 4 C -0.024 4.024 5 C -0.219 4.219 6 C 0.150 3.850 7 O -0.578 6.578 8 C 0.178 3.822 9 C -0.465 4.465 10 H 0.088 0.912 11 C 0.083 3.917 12 N -0.769 5.769 13 Si 0.897 3.103 14 H -0.257 1.257 15 H -0.272 1.272 16 H -0.269 1.269 17 C -0.135 4.135 18 C -0.029 4.029 19 C -0.276 4.276 20 S -0.004 6.004 21 C -0.070 4.070 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.108 0.892 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.367 0.633 31 H 0.285 0.715 32 H 0.125 0.875 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.919 -2.392 -1.447 2.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.194 4.194 4 C -0.044 4.044 5 C -0.222 4.222 6 C 0.073 3.927 7 O -0.382 6.382 8 C 0.173 3.827 9 C -0.494 4.494 10 H 0.106 0.894 11 C -0.138 4.138 12 N -0.392 5.392 13 Si 0.720 3.280 14 H -0.181 1.181 15 H -0.198 1.198 16 H -0.194 1.194 17 C -0.142 4.142 18 C -0.058 4.058 19 C -0.408 4.408 20 S 0.256 5.744 21 C -0.185 4.185 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.212 0.788 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.008 -3.911 -0.042 3.911 hybrid contribution 0.899 2.616 -0.618 2.834 sum 0.907 -1.295 -0.659 1.713 Atomic orbital electron populations 1.21752 0.96402 0.99924 1.02021 1.20202 0.95007 0.94116 1.00611 1.18382 1.14205 0.96101 0.90751 1.20103 0.95156 0.93998 0.95190 1.19241 1.14085 0.96494 0.92385 1.20509 0.97934 0.89348 0.84878 1.86452 1.91713 1.42260 1.17784 1.18030 0.85511 0.91586 0.87545 1.19394 1.17617 0.92835 1.19519 0.89420 1.25869 0.93925 1.00270 0.93786 1.69879 1.12537 1.35444 1.21317 0.86432 0.81101 0.80916 0.79508 1.18091 1.19757 1.19362 1.19017 1.09958 0.91881 0.93375 1.19782 0.96162 0.98707 0.91187 1.24631 1.16789 0.97679 1.01741 1.83346 1.73787 1.17131 1.00148 1.22183 1.04246 0.97333 0.94767 0.92849 0.92959 0.93873 0.92529 0.92963 0.87366 0.94315 0.93687 0.78841 0.90342 0.85737 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.89 37.16 0.37 -2.09 16 2 C -0.06 -1.15 5.85 -27.88 -0.16 -1.32 16 3 C -0.19 -4.23 5.17 -104.14 -0.54 -4.77 16 4 C -0.02 -0.54 8.91 -39.84 -0.35 -0.90 16 5 C -0.22 -5.19 5.92 -104.05 -0.62 -5.81 16 6 C 0.15 3.01 6.41 36.01 0.23 3.24 16 7 O -0.58 -10.25 12.11 -35.23 -0.43 -10.67 16 8 C 0.18 4.53 5.49 -104.29 -0.57 3.95 16 9 C -0.47 -11.37 8.10 -38.04 -0.31 -11.67 16 10 H 0.09 2.04 7.36 -52.49 -0.39 1.65 16 11 C 0.08 1.93 3.84 -17.32 -0.07 1.86 16 12 N -0.77 -18.82 10.87 55.55 0.60 -18.21 16 13 Si 0.90 17.37 29.61 -169.99 -5.03 12.33 16 14 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 15 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 C -0.14 -3.43 5.52 -104.75 -0.58 -4.01 16 18 C -0.03 -0.69 8.28 -40.81 -0.34 -1.03 16 19 C -0.28 -5.92 11.11 28.85 0.32 -5.60 16 20 S 0.00 -0.09 22.67 -107.50 -2.44 -2.53 16 21 C -0.07 -1.68 6.29 -38.50 -0.24 -1.92 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.97 8.02 -51.93 -0.42 0.56 16 26 H 0.05 0.95 7.73 -51.93 -0.40 0.55 16 27 H 0.11 2.33 6.92 -52.49 -0.36 1.97 16 28 H 0.04 0.74 7.76 -51.93 -0.40 0.34 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.37 4.39 9.12 45.56 0.42 4.81 16 31 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 32 H 0.12 2.96 6.09 -52.49 -0.32 2.64 16 33 H 0.14 2.62 8.06 -52.48 -0.42 2.20 16 LS Contribution 289.28 15.07 4.36 4.36 Total: -1.00 -27.51 289.28 -8.92 -36.42 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -3.12 Total: 8.35 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: -2.86 Total: -30.05 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.60 Total: -18.21 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.43 Total: -10.67 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.44 Total: -2.53 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.51 -8.92 -36.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.566 kcal (2) G-P(sol) polarization free energy of solvation -27.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds