Wall clock time and date at job start Mon Mar 30 2020 06:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46823 * 2 1 4 4 C 1.38167 * 119.27126 * 265.22672 * 3 2 1 5 5 C 1.37607 * 121.08347 * 180.28635 * 4 3 2 6 6 C 1.50703 * 119.93001 * 179.74349 * 5 4 3 7 7 O 1.42908 * 109.46769 * 357.71858 * 6 5 4 8 8 C 1.40359 * 120.14232 * 359.46708 * 5 4 3 9 9 C 1.40574 * 120.40502 * 180.25546 * 8 5 4 10 10 H 1.08000 * 119.99980 * 320.45512 * 9 8 5 11 11 C 1.40001 * 120.00194 * 140.46651 * 9 8 5 12 12 N 1.30833 * 119.99830 * 339.48742 * 11 9 8 13 13 Si 1.86793 * 120.00317 * 159.48756 * 11 9 8 14 14 H 1.48504 * 109.46922 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47150 * 119.99826 * 13 11 9 16 16 H 1.48498 * 109.47603 * 239.99756 * 13 11 9 17 17 C 1.47841 * 119.18535 * 0.27251 * 8 5 4 18 18 C 1.39982 * 129.23804 * 180.02562 * 17 8 5 19 19 C 1.32715 * 115.80913 * 180.02562 * 18 17 8 20 20 S 1.75516 * 110.67755 * 359.97438 * 19 18 17 21 21 C 1.39602 * 119.28142 * 84.99841 * 3 2 1 22 22 H 1.09001 * 109.47715 * 300.00029 * 1 2 3 23 23 H 1.09001 * 109.47390 * 60.00670 * 1 2 3 24 24 H 1.09005 * 109.46799 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47605 * 239.99512 * 2 1 3 26 26 H 1.09001 * 109.47390 * 119.99330 * 2 1 3 27 27 H 1.07991 * 119.45678 * 0.05288 * 4 3 2 28 28 H 1.08997 * 109.47029 * 237.72632 * 6 5 4 29 29 H 1.08999 * 109.47627 * 117.71587 * 6 5 4 30 30 H 0.96704 * 113.99400 * 180.02562 * 7 6 5 31 31 H 0.97003 * 120.00332 * 177.28645 * 12 11 9 32 32 H 1.08000 * 122.09538 * 359.97438 * 18 17 8 33 33 H 1.08006 * 124.66361 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3520 2.0244 -1.2011 5 6 2.8193 3.3180 -1.2440 6 6 3.1656 3.9488 -2.5680 7 8 2.9759 2.9943 -3.6145 8 6 2.9686 4.0531 -0.0576 9 6 3.4405 5.3767 -0.0955 10 1 4.2341 5.6479 -0.7760 11 6 2.8819 6.3435 0.7491 12 7 1.6961 6.1524 1.2679 13 14 3.8295 7.9062 1.1353 14 1 5.1360 7.8799 0.4300 15 1 3.0463 9.0844 0.6839 16 1 4.0597 7.9965 2.5996 17 6 2.6239 3.4181 1.2322 18 6 2.6903 3.9485 2.5259 19 6 2.3123 3.1350 3.5040 20 16 1.8223 1.5775 2.8602 21 6 2.1597 2.1000 1.2130 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8900 27 1 2.2367 1.4705 -2.1210 28 1 4.2065 4.2719 -2.5554 29 1 2.5199 4.8099 -2.7403 30 1 3.1809 3.3323 -4.4971 31 1 1.3256 6.8035 1.8841 32 1 3.0288 4.9563 2.7163 33 1 2.3061 3.3958 4.5521 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396289537.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:38 Heat of formation + Delta-G solvation = -43.261480 kcal Electronic energy + Delta-G solvation = -17483.546495 eV Core-core repulsion = 14791.935501 eV Total energy + Delta-G solvation = -2691.610994 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.077 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16933 -37.70739 -36.48480 -35.53019 -34.04737 -30.86602 -30.12876 -27.37705 -26.34938 -24.12470 -23.79500 -21.32181 -20.38762 -19.58781 -18.25788 -17.49599 -16.68538 -16.27388 -15.75754 -15.62079 -15.47515 -14.93585 -14.63858 -14.38239 -14.02664 -13.71504 -13.39322 -13.20538 -13.06818 -12.80103 -12.49192 -12.43652 -12.12389 -12.00776 -11.84869 -11.66655 -11.48397 -10.95998 -10.84677 -10.77487 -9.77337 -8.87658 -8.81862 -8.18524 -6.34149 0.21716 0.83011 1.04301 1.37601 1.40234 1.44571 1.51833 1.93351 2.17641 2.66964 3.46366 3.57951 4.18859 4.25201 4.32556 4.50539 4.63245 4.67086 4.75868 4.79096 4.84601 4.94644 5.06109 5.10859 5.13228 5.25295 5.36158 5.42818 5.52823 5.62114 5.93493 6.03175 6.09124 6.30030 6.43219 6.81452 6.90281 7.08654 8.26269 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.009933 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.301276 B = 2818.259236 C = 4241.110880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C -0.190 4.190 4 C -0.039 4.039 5 C -0.238 4.238 6 C 0.161 3.839 7 O -0.584 6.584 8 C 0.144 3.856 9 C -0.489 4.489 10 H 0.089 0.911 11 C 0.051 3.949 12 N -0.804 5.804 13 Si 0.964 3.036 14 H -0.255 1.255 15 H -0.267 1.267 16 H -0.265 1.265 17 C -0.161 4.161 18 C -0.055 4.055 19 C -0.268 4.268 20 S 0.043 5.957 21 C -0.105 4.105 22 H 0.038 0.962 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.393 0.607 31 H 0.290 0.710 32 H 0.117 0.883 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 -3.013 -1.213 3.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.059 4.059 5 C -0.242 4.242 6 C 0.084 3.916 7 O -0.392 6.392 8 C 0.139 3.861 9 C -0.517 4.517 10 H 0.107 0.893 11 C -0.167 4.167 12 N -0.428 5.428 13 Si 0.785 3.215 14 H -0.178 1.178 15 H -0.192 1.192 16 H -0.189 1.189 17 C -0.169 4.169 18 C -0.085 4.085 19 C -0.401 4.401 20 S 0.304 5.696 21 C -0.220 4.220 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.137 0.863 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.242 0.758 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.028 -4.544 0.163 4.547 hybrid contribution 0.855 2.682 -0.708 2.903 sum 0.883 -1.862 -0.545 2.131 Atomic orbital electron populations 1.21694 0.95082 1.01760 1.00999 1.20260 0.96054 0.91839 1.01661 1.18878 1.12712 0.97789 0.90281 1.20325 0.95595 0.94074 0.95923 1.19737 1.13692 0.97102 0.93625 1.20266 0.98051 0.89048 0.84268 1.86377 1.91804 1.41997 1.19034 1.18429 0.86740 0.92541 0.88375 1.19569 1.18195 0.93162 1.20790 0.89293 1.26557 0.94276 1.02861 0.93051 1.69927 1.13879 1.36824 1.22132 0.85422 0.79707 0.77098 0.79269 1.17788 1.19176 1.18949 1.19385 1.10551 0.92876 0.94050 1.19796 0.98218 0.99000 0.91455 1.25085 1.14408 0.97705 1.02875 1.83035 1.72933 1.15925 0.97728 1.22578 1.05030 0.97483 0.96861 0.94315 0.93535 0.90588 0.90872 0.92450 0.86288 0.93595 0.94194 0.75812 0.89870 0.86532 0.81037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.89 71.98 0.71 -3.72 16 2 C -0.06 -2.15 5.85 29.85 0.17 -1.98 16 3 C -0.19 -8.48 5.17 -19.55 -0.10 -8.58 16 4 C -0.04 -1.76 8.91 22.10 0.20 -1.57 16 5 C -0.24 -11.49 5.92 -19.50 -0.12 -11.60 16 6 C 0.16 6.46 6.41 71.24 0.46 6.92 16 7 O -0.58 -20.04 12.11 -148.98 -1.80 -21.84 16 8 C 0.14 7.50 5.49 -19.65 -0.11 7.40 16 9 C -0.49 -24.48 8.10 23.27 0.19 -24.29 16 10 H 0.09 4.24 7.36 -2.91 -0.02 4.22 16 11 C 0.05 2.40 3.84 85.27 0.33 2.72 16 12 N -0.80 -40.14 10.87 21.84 0.24 -39.90 16 13 Si 0.96 35.83 29.61 68.60 2.03 37.86 16 14 H -0.25 -9.22 7.11 99.48 0.71 -8.52 16 15 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 16 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 17 C -0.16 -8.34 5.52 -19.94 -0.11 -8.45 16 18 C -0.06 -2.66 8.28 21.52 0.18 -2.48 16 19 C -0.27 -11.21 11.11 66.65 0.74 -10.47 16 20 S 0.04 1.74 22.67 -56.49 -1.28 0.46 16 21 C -0.10 -4.98 6.29 22.97 0.14 -4.83 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.07 2.34 8.02 -2.39 -0.02 2.32 16 26 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 27 H 0.12 5.05 6.92 -2.92 -0.02 5.03 16 28 H 0.05 1.76 7.76 -2.39 -0.02 1.74 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.39 8.70 9.12 -74.05 -0.68 8.02 16 31 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 32 H 0.12 5.67 6.09 -2.91 -0.02 5.65 16 33 H 0.17 5.96 8.06 -2.91 -0.02 5.93 16 Total: -1.00 -59.31 289.28 2.33 -56.99 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.46 Total: 27.38 kcal Atomic # 6 Polarization: -63.62 SS G_CDS: 2.68 Total: -60.94 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.24 Total: -39.90 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.80 Total: -21.84 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -1.28 Total: 0.46 kcal Total: -59.31 2.33 -56.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396289537.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.724 kcal (2) G-P(sol) polarization free energy of solvation -59.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds